BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476156
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70330.1 | Symbols: ENT1,AT, ENT1 | equilibrative nucleotide... 2396 0.0
AT1G70340.1 | Symbols: | Plant protein of unknown function (DU... 946 0.0
> AT1G70330.1 | Symbols: ENT1,AT, ENT1 | equilibrative nucleotide
transporter 1 | chr1:26502909-26504619 FORWARD LENGTH=1623
Length=1623
Score = 2396 bits (1297), Expect = 0.0
Identities = 1521/1626 (94%), Gaps = 27/1626 (2%)
Strand=Plus/Plus
Query 1 CCCATTAGTCAACGAATTTCCCAAAAATCCCCAAAACTGA-AAAAAGCTAACCAAATTCA 59
|||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||
Sbjct 18 CCCATTAGTCAACGAATTTCCCAAAAATCCCCAAAACTGAGAGAAA-CTAAACAAATTCA 76
Query 60 AATGACCACCGCCGATAAATCCGCCGGAATCGTAACTGACTCGGAA-CCAGGAACGGAGA 118
|||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 77 AATGACCACCACCGATAAATCCGCCGGAATCGTAACTGACTCGGAAGCC-GGACCGGAGA 135
Query 119 CTTCTCTTCTCCTCAATCCTCACGAAGGATCCACCAGAAAAGATCC-TCATGATTCCTAC 177
||||||||||||||||||||||||||||||| |||| ||||| ||| || ||||||||||
Sbjct 136 CTTCTCTTCTCCTCAATCCTCACGAAGGATCTACCAAAAAAGCTCCTTC-TGATTCCTAC 194
Query 178 CACTTCGCTTACATCATCTACTTCACCCTCGGTGTTGGCTTTCTTCTTCCATGGAACGCT 237
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 195 CACTTCGCTTACATCATCTACTTCACCCTCGGCGTTGGCTTTCTTCTTCCATGGAACGCA 254
Query 238 TTCATCACCGCCGTCGACTACTTCTCTTACCTCTATCCTTCCACCGCCGTTGATCGGATC 297
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 255 TTCATCACCGCCGTCGATTACTTCTCTTACCTCTATCCTTCCACGGCCGTCGATCGGATC 314
Query 298 TTCGCCGTTATCTACATGCTCGTCGGTCTTGTTTGTCTATCCATTATCGTTGTCTTCTAT 357
||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||
Sbjct 315 TTCGCCGTTATCTACATGCTCGTTGCTCTTGTTTGTCTATTCGTTATCGTTGTCTTCTAT 374
Query 358 GCACATAAGAGCCTCGCTAGCTTTAGAATCAATCTCGGCCTCTTACTCTTCGTAATCGCC 417
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 375 GCACATAAGAGCCTCGCTAGCTTTAGAATCAATCTCGGTCTTTTACTCTTCGTAATCGCC 434
Query 418 TTGCTTGTGGTTCCTGTTTTGGATCTGGTTTATGTTAAAGGACAGGTCGGTTTATCCGCC 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 435 TTGCTTGTGGTTCCTGTTTTGGATCTGGTTTATGTTAAAGGACAGGTCGGATTATACGCC 494
Query 478 GGATTCGATGTTACTTCCGCCGCCGTTGCGCTT-TCCGGTCTCGGTGATGCACTTATGCA 536
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 495 GGATTCGATGTTACTTCCGCCGCCGTTGC-CTTATCCGGTCTAGGTGATGCACTTATGCA 553
Query 537 GGGAGGTCTTATCGGTGTTGCCGGTGAAATGCCTGCGAGGTATATGCAAGCTGTTGTCGC 596
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 554 AGGAGGTCTTATCGGTGTTGCCGGTGAAATGCCGGAGAGGTATATGCAAGCTGTTGTCGC 613
Query 597 CGGAACTGCTGGCTCCGGTGTTCTTGTTTCACTGTTGAGAATCTTGACTAAAGCTGTGTA 656
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 614 CGGAACTGCTGGCTCCGGTGTTCTTGTGTCACTATTGAGAATTTTGACTAAAGCTGTGTA 673
Query 657 TCCTCAAGATCCTGATGGTTTGAGAAAAAGTGCGAATCTATACTTTGCTGTGGGAATTGT 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 674 TCCTCAAGATCCTGATGGTTTGAGAAAAAGTGCGAATCTATACTTTGCTGTGGGGATTGT 733
Query 717 TGTTATGGTGATCTGTGCTGTGCTCTACAACGTGGCGCATAAACTTCCGGTGATCAAGTT 776
|||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 734 TGTTATGGTGATTTGTGCTGTGTTCTACAACGTAGCGCATAAGCTTCCGGTGATCAAGTT 793
Query 777 CCACGAAGCGCGTAAGAATGAAGAACTAATTAGAGAGAAGAGTGAAGAGAAAGGTTCTTT 836
||| || | ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 794 CCATGAGGAGCGTAAGAATGAAGAACTAATCAGAGAGAAGAGCGAAGAGAAAGGTTCTTT 853
Query 837 AACCGGACTAGCGTGGAGGAAAACACTCTGGGAGATCGTGACGAAAGTTAAATCTCATGG 896
|||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 854 AACCGGTTTAGCGTGGAGGACAACACTCTGGGATATCGTGACGAAAGTTAAATCTCATGG 913
Query 897 TTTCGGGATCATTCTCATT-TACATGGTGACATTGTCGATATTCCCTGGATACATTACTG 955
||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 914 TTTCGGGATTGTTCTC-TTATACATGGTGACATTGTCGATATTTCCTGGATACATTACTG 972
Query 956 AGGATGTTCATTCCGAGCTTCTTAAAGACTGGTACCCTGTGCTACTCATTGCAGCGTACA 1015
||||||||||||| |||||||||| ||| ||||||||| | || || |||||||||||||
Sbjct 973 AGGATGTTCATTCAGAGCTTCTTACAGATTGGTACCCTATTCTGCTTATTGCAGCGTACA 1032
Query 1016 ACGTGTTTGACTTGGTTGGGAAGTGTCTGACCGCTGTTTTCATGCTGGAGGATGAGAAAA 1075
| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1033 ATGTGTTTGACTTGGTTGGTAAGTGTCTGACTGCTGTATTCATGCTGGAGGATGAGAAAA 1092
Query 1076 TCGCTGTTGGTGGTTGCATTGCTAGGCTCTTGTTTTACCCTCTCTTCTGGGGTTGCTTGC 1135
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TCGCTGTTGGTGGTTCCATTGCTAGGCTCTTGTTTTACCCTCTCTTCTGGGGTTGCTTGC 1152
Query 1136 ACGGTCCCATGTTTCTCAGGACTGAGATTCCTGTAACTATACTGACATGCTTATTGGGAC 1195
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ACGGTCCGATGTTTCTCAGGACTGAGATTCCTGTAACTATACTGACATGCTTATTGGGAC 1212
Query 1196 TTACCAACGGGTACTTGACAAGCGTCTTGATGATTCTGGCTCCAAAATCGGTTCCATTGA 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1213 TTACCAACGGGTACTTGACAAGCGTCTTGATGATTCTGGCTCCAAAATCGGTTCCACTGA 1272
Query 1256 AACACTCAGAGACTGCAGGTATCGTCACTGTGATGTTCTTGGTTGTTGGTTTGGCCTTTG 1315
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1273 GACACTCGGAGACTGCAGGAATCGTCACTGTGATGTTCTTGGTTGTTGGTTTGGCCTCTG 1332
Query 1316 GGTCTGTCATTGCTTGGTTCTGGGTCATTTGATTCTACCAAAGCTT-GTTATCTGTATTT 1374
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1333 GATCTGTCATTGCTTGGTTCTGGGTCATTTGATTCTACCAAAGCTTTGTTATCTGTATTT 1392
Query 1375 GTTGTATTCTTTAAGCTTTCGACAGACTCAGCTTCATTAATCTGGGAATTGTCCTGTGTG 1434
|||| ||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||
Sbjct 1393 GTTGAATTCTTTAAGCTT-CGACAAACTCAGCTTCATTAATCTGTGAATCATCCTGTGTG 1451
Query 1435 AATCGTTCATTTTTACTTCAGTAATATGTGAAAATTCttttttttttttACACCATAAAC 1494
||| |||| ||||| |||||||||||||||||||||||| ||| | ||||||| |||
Sbjct 1452 AATTGTTCGTTTTTCCTTCAGTAATATGTGAAAATTCTTCTTTCT----ACACCATGAAC 1507
Query 1495 ACAAAAGACTTATAAGCTGTAAAAGGGTACAACGT-TGATTCAGTGTTTCTCATTAAGGT 1553
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| | |
Sbjct 1508 ACAAAAGACTTATAAGCTGTAAAAGGCTACAACGTGT-ATTCAGTGTTTCTCATT--G-T 1563
Query 1554 AAGTTTAGGTGGTTCAAGGATTCTTCAATTTAATTCTGAGCTTTCGAGTGATCTTTGATG 1613
|||| ||| | ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1564 AAGT---GGT--T-CAAGGATTCTTCAGTTTAATTCTGAGCTTTCTAGTGATCTTTGATG 1617
Query 1614 TTTTTG 1619
|||||
Sbjct 1618 CTTTTG 1623
> AT1G70340.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr1:26503961-26506613 REVERSE LENGTH=2363
Length=2363
Score = 946 bits (512), Expect = 0.0
Identities = 623/674 (92%), Gaps = 17/674 (3%)
Strand=Plus/Minus
Query 948 CATTACTGAGGATGTTCATTCCGAGCTTCTTAAAGACTGGTACCCTGTGCTACTCATTGC 1007
||||||||||||||||||||| |||||||||| ||| ||||||||| | || || |||||
Sbjct 2363 CATTACTGAGGATGTTCATTCAGAGCTTCTTACAGATTGGTACCCTATTCTGCTTATTGC 2304
Query 1008 AGCGTACAACGTGTTTGACTTGGTTGGGAAGTGTCTGACCGCTGTTTTCATGCTGGAGGA 1067
||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 2303 AGCGTACAATGTGTTTGACTTGGTTGGTAAGTGTCTGACTGCTGTATTCATGCTGGAGGA 2244
Query 1068 TGAGAAAATCGCTGTTGGTGGTTGCATTGCTAGGCTCTTGTTTTACCCTCTCTTCTGGGG 1127
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2243 TGAGAAAATCGCTGTTGGTGGTTCCATTGCTAGGCTCTTGTTTTACCCTCTCTTCTGGGG 2184
Query 1128 TTGCTTGCACGGTCCCATGTTTCTCAGGACTGAGATTCCTGTAACTATACTGACATGCTT 1187
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2183 TTGCTTGCACGGTCCGATGTTTCTCAGGACTGAGATTCCTGTAACTATACTGACATGCTT 2124
Query 1188 ATTGGGACTTACCAACGGGTACTTGACAAGCGTCTTGATGATTCTGGCTCCAAAATCGGT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 ATTGGGACTTACCAACGGGTACTTGACAAGCGTCTTGATGATTCTGGCTCCAAAATCGGT 2064
Query 1248 TCCATTGAAACACTCAGAGACTGCAGGTATCGTCACTGTGATGTTCTTGGTTGTTGGTTT 1307
|||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2063 TCCACTGAGACACTCGGAGACTGCAGGAATCGTCACTGTGATGTTCTTGGTTGTTGGTTT 2004
Query 1308 GGCCTTTGGGTCTGTCATTGCTTGGTTCTGGGTCATTTGATTCTACCAAAGCTT-GTTAT 1366
||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2003 GGCCTCTGGATCTGTCATTGCTTGGTTCTGGGTCATTTGATTCTACCAAAGCTTTGTTAT 1944
Query 1367 CTGTATTTGTTGTATTCTTTAAGCTTTCGACAGACTCAGCTTCATTAATCTGGGAATTGT 1426
|||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||| |
Sbjct 1943 CTGTATTTGTTGAATTCTTTAAGCTT-CGACAAACTCAGCTTCATTAATCTGTGAATCAT 1885
Query 1427 CCTGTGTGAATCGTTCATTTTTACTTCAGTAATATGTGAAAATTCttttttttttttACA 1486
||||||||||| |||| ||||| |||||||||||||||||||||||| ||| | |||
Sbjct 1884 CCTGTGTGAATTGTTCGTTTTTCCTTCAGTAATATGTGAAAATTCTTCTTTCT----ACA 1829
Query 1487 CCATAAACACAAAAGACTTATAAGCTGTAAAAGGGTACAACGT-TGATTCAGTGTTTCTC 1545
|||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1828 CCATGAACACAAAAGACTTATAAGCTGTAAAAGGCTACAACGTGT-ATTCAGTGTTTCTC 1770
Query 1546 ATTAAGGTAAGTTTAGGTGGTTCAAGGATTCTTCAATTTAATTCTGAGCTTTCGAGTGAT 1605
||| | ||||| ||| | ||||||||||||| ||||||||||||||||| ||||||
Sbjct 1769 ATT--G-TAAGT---GGT--T-CAAGGATTCTTCAGTTTAATTCTGAGCTTTCTAGTGAT 1719
Query 1606 CTTTGATGTTTTTG 1619
|||||||| |||||
Sbjct 1718 CTTTGATGCTTTTG 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5