BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476161
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70410.2 | Symbols: ATBCA4, BCA4 | beta carbonic anhydrase 4... 1943 0.0
> AT1G70410.2 | Symbols: ATBCA4, BCA4 | beta carbonic anhydrase
4 | chr1:26533926-26538333 REVERSE LENGTH=1336
Length=1336
Score = 1943 bits (1052), Expect = 0.0
Identities = 1262/1357 (93%), Gaps = 40/1357 (3%)
Strand=Plus/Plus
Query 1 CGAACGGTCGTCATAATTCCTTGAAACCTCGAAAATCCAAAAACCCATATCCAATCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGAACGGTCGTCATAATTCCTTGAAACCTCGAAAATCCAAAAACCCATATCCAATCTTCT 60
Query 61 TCCCAAATAAACATATGAATTAAGAttttt-ttGGGTT-TTTATTTACTTATTTCAATTC 118
|||| || ||| ||||||||||||| || || ||| |||||||||||||||||
Sbjct 61 TCCC--AT----ATA--AATTAAGATTTTTATTTATTTATTTGTTTACTTATTTCAATTC 112
Query 119 CCAAAATTCTCTGCATCATCATCTTCGAACTGTTCCCACGTCCATAGGGTTTTCGAGGAG 178
||||||| |||||| ||||||||||| ||||||| |||||||||||||||| |||| |||
Sbjct 113 CCAAAATCCTCTGCCTCATCATCTTCAAACTGTTACCACGTCCATAGGGTTGTCGAAGAG 172
Query 179 CTA-GAGAGAGCATTATCAAGAGCTTCTTTCTTCATCCCTAACATTTAGGTAGGTAGGAG 237
||| || ||||| ||| |||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 173 CTAGGA-AGAGCCTTACCAAGAGCTTC-TTCTTC--CCCTAACATTTAGGTTGGTAGGAG 228
Query 238 AAGCAGAGGAAGAGATCATTTATAATGGCTCCTGCATTCGGCAAATGTTTCACGTTCTGT 297
||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 229 AAGCAAAGGAAGAGATCATTTATAATGGCTCCTGCATTCGGAAAATGTTTCATGTTCTGC 288
Query 298 TGCGCTAAGACCTCCCCGGAAGAAGACGAAATGGCAACGGAATCGTACGAAGCCGCCATT 357
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 289 TGCGCTAAAACCTCCCCGGAAAAAGACGAAATGGCAACGGAATCGTACGAAGCCGCCATT 348
Query 358 AAAGGACTCAATGATCTTCTCAGTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AAAGGACTCAATGATCTTCTCAGTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAG 408
Query 418 ATCAAAGCGTTGACGGCGGAGCTAAAGGAGCTTGACTCCAA-CAATTCAGACGCTATTGA 476
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 409 ATCAAAGCGTTGACGGCGGAGCTAAAGGAGCTTGACTC-AAGCAATTCAGACGCAATTGA 467
Query 477 ACGAATCAAGACTGGTTTTACTCAATTCAAAACTGAGAAATATTTGAAGAATAGTGCTTT 536
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 468 ACGAATCAAGACCGGTTTTACTCAATTCAAAACCGAGAAATATTTGAAGAATAGTACTTT 527
Query 537 GTTCAATGATCTTGCCAAGGGC-CAGAGCCCAAAGTTTCTGGTGTTTGCTTGTTCTGATT 595
||||||| ||||||||||| | |||| |||||||||||||||||||||||| |||||||
Sbjct 528 GTTCAATCATCTTGCCAAGA-CTCAGACCCCAAAGTTTCTGGTGTTTGCTTGCTCTGATT 586
Query 596 CTCGAGTTTGTCCATCTCACATCTTGAATTTCGGACCTGGTGAGGCTTTTGTTGTCAGAA 655
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 587 CTCGAGTTTGTCCATCTCACATCTTGAATTTCCAACCTGGTGAGGCTTTTGTTGTCAGAA 646
Query 656 ACATTGCCAACATGGTTCCACCTTTTGACCAGAAGAGACACTCTGGAGTTGGAGCCGCCG 715
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 647 ACATAGCCAATATGGTTCCACCTTTTGACCAGAAGAGACACTCTGGAGTTGGCGCCGCCG 706
Query 716 TCGAATACGCAGTTGTACATCTCAAGGTGGAGAACATTTTGGTGATAGGCCATAGCTGCT 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TTGAATACGCAGTTGTACATCTCAAGGTGGAGAACATTTTGGTGATAGGCCATAGCTGCT 766
Query 776 GTGGTGGCATTAAGGGACTCATGAACATTGAAGATGATGCTGCCCCAACTCAGAGTGACT 835
||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 767 GTGGTGGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGTGACT 826
Query 836 TCATAGAAAACTGGGTGAAGATTGGCGCATCAGCGAGGAACAAGATCAAGGAGGAACATA 895
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 827 TCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGATCAAGGAGGAACATA 886
Query 896 AAGACCTGAGCTACGATGAGCAATGCAACAAGTGTGAGAAGGAAGCTGTGAATGTATCGC 955
||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 887 AAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGGAAGCTGTGAACGTATCGC 946
Query 956 TTGGAAACTTGCTTTCGTACCCATTCGTGAGAGCTGCGGTAGTGAAGAACACACTTGCAA 1015
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 947 TTGGAAACTTGCTTTCGTACCCATTCGTGAGAGCTGAGGTGGTGAAGAACACACTTGCAA 1006
Query 1016 TAAGAGGAGGTCACTACAATTTCGTCAAAGGAACATTTGATCTCTGGGAGCTCGATTTCA 1075
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1007 TAAGAGGAGGTCACTACAATTTCGTCAAAGGAACGTTTGATCTCTGGGAGCTCGATTTCA 1066
Query 1076 AGACCACTCCTGCTGTTGCCTTCTCTTaa-aaa-aaaGAAAG-GGAATATATAA--CTCT 1130
|||||||||||||| |||||||||||||| ||| |||| | |||| |||||| ||||
Sbjct 1067 AGACCACTCCTGCTTTTGCCTTCTCTTAAGAAAGAAAGCTACCGGAACATATAAAACTCT 1126
Query 1131 TTTGAGATAAAAA--GACACTTTGACTCATCTTTCT-C-T-C----ATGTTGATGATTAC 1181
||||||||||||| ||||||||||||||||||||| | | | |||||||||||| |
Sbjct 1127 TTTGAGATAAAAAAAGACACTTTGACTCATCTTTCTTCATTCTCTCATGTTGATGATTCC 1186
Query 1182 TCTCCAACTTCTTTGGTTTCTTTTTTCTTTTGTTAATTCAAAACTTCAACTTTGCTGCTT 1241
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1187 TCTCCAACTTCTTTGATTTCTTTTT------GTTAATTCAAAACTTCAACTTTGCTGCTT 1240
Query 1242 CTATTTCAAAAGCTTAAACAATAAAAGCTGTAACCAACGTTTGAAACTTCTATATTTGTC 1301
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1241 CTATTTCAAAAGCTCAAACAATAAA-GCTGTAACCAACGTTTGAAACTTCTATATTTGTC 1299
Query 1302 TAATTGATGTTTGAACGAAGATATGAACTTTCCTTCT 1338
|||||||||||||||||||||| ||||||||||||||
Sbjct 1300 TAATTGATGTTTGAACGAAGATTTGAACTTTCCTTCT 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5