BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476162
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70420.1 | Symbols: | Protein of unknown function (DUF1645)... 1042 0.0
> AT1G70420.1 | Symbols: | Protein of unknown function (DUF1645)
| chr1:26539574-26540762 REVERSE LENGTH=1189
Length=1189
Score = 1042 bits (564), Expect = 0.0
Identities = 795/896 (89%), Gaps = 58/896 (6%)
Strand=Plus/Plus
Query 1 ATGCAAGTTGTTGCTCCTTCATCTCCGGCGTCGAAATTCGCCGGAAAAGAGAGATTTTCA 60
||||||||| || ||||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 105 ATGCAAGTTATTTCTCCTTCGTCTCCGGCGCCGAGATTCGCCGGAAAAGAGAGATTTTCA 164
Query 61 GAAGTTTACGGCGAACTAAACGACGATTTTGGCTCAAAACTgaagataagttctacagag 120
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 165 GAAGTTTACGGCGAACTAAACGACGATTTTGGCTCTAAACTGAAGATTAGTTCTAAAGAG 224
Query 121 gaagaaaacagagat-a--a--c--g----a-t--gaa-g-aa--ga-aa-ga-ga--a- 156
||||||||||||||| | | | | | | ||| | || || || || || |
Sbjct 225 GAAGAAAACAGAGATGATGATTCATGGTGGAATCAGAACGGAACTGATAAAGATGATGAA 284
Query 157 g-aagag-------TT-CTCATTCGCAAGTGTAAACGCAGAGAATTCACCGATAACCGCA 207
| ||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 285 GGAAGAGAAGAAGATTTCTCATTCGCAAGTGTAAACGCAGATAATTCACCGATAACCGCA 344
Query 208 GAAGAAGCGTTCGAAGATGGTCAGATCCGACCGGTTTATCCTCTGTTTAACCGGAATTTT 267
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 345 GATGAAGCATTCGAAGACGGTCAGATCCGACCGGTTTATCCTCTGTTTAACCGGAATATT 404
Query 268 TTCTTCGATGATCCAAAGGAGGAAACTTTACGTTCACCTCTCAAGAAACTCTTCGTTGAA 327
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 405 TTCTTCGATGATCCAGAGGAAAAAACTTTACGTTCACCTCTCAAGAAACTCTTCGTTGAA 464
Query 328 GCCACAACCACCgaagaagaagaagaagaagaagaGTCAGAGACGGTGGGTCCGTTTTGT 387
|||||||||| | ||||||||||||||||| | ||||| ||||||||||| | ||||
Sbjct 465 TCCACAACCAC--A-GAAGAAGAAGAAGAAGA-G--TCAGATACGGTGGGTCCATATTGT 518
Query 388 TCATGGTCAAATCGTACGGTGGAGGAAGCATCACCGGAGACTTGTCGGAAAAGTAACTCA 447
|||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 519 TCATGGACAAATCGTACGGTGGAGCAAGCATCACCAGAGACTTGTCGGAAAAGTAACTCA 578
Query 448 ACAGGGTTTTCAAAGCTATGGAGGTTTAGAGATCTTGTTTTAAGAAGTAACAGTGATGGA 507
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 579 ACAGGGTTCTCAAAGCTATGGAGATTTAGAGATCTTGTTTTGAGAAGTAACAGTGATGGA 638
Query 508 AAAGATGCGTTTGTGTTTTTAAGCAACGGCTCTTCATCTTCGTCGTCGACATCG-C--CG 564
||||||||||||||||||||||||||||||||||||||| | |||||||| ||| | ||
Sbjct 639 AAAGATGCGTTTGTGTTTTTAAGCAACGGCTCTTCATCTACATCGTCGACGTCGTCTACG 698
Query 565 A-----A-ATTGAGCGGTGTG---AAGTCGTCGgagaaagggaaagagaaaacgaagacg 615
| |||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 699 GCGGCGAGATTGAGTGGTGTGGTGAAGTCGTCGGAGAAAGGGAAAGAGAAAACGAAGACG 758
Query 616 gagaagaagaag-a-a-gatgagaacgaaaTCGGCACATGAGAAATTGTATATGAGAAAC 672
|| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GATAAGAAGAAGGATAAGATGAGAACGAAATCGGCACATGAGAAATTGTATATGAGAAAC 818
Query 673 AGAGCAATGAGAGAAGAAGGAAAACGAAGATCGTATCTACCGTATCAACATGTTGGATTC 732
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |||
Sbjct 819 AGAGCAATGAGAGAAGAAGGGAAACGAAGATCGTATCTTCCGTATAAACATGTTGGGTTC 878
Query 733 TTCACTAATGTTAATGGTTTAACCAGAAATGTTCATCCATTTTGATTAAACCGGTCT-T- 790
|||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |
Sbjct 879 TTCACTAATGTTAATGGTTTAACCAGAAATGTTCATCCCTATTGATTAAACCGATCTGTC 938
Query 791 GTTTCAAAATTTCTACCGACAAATCTTTGCCTTTGTGTAT-TATATAACCTTTTTT 845
|| |||||| ||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 939 GTACCAAAATCTCTACCGACAAATCTTTGCCTTT-TGTATATATCTAACCTTTTTT 993
Score = 128 bits (69), Expect = 9e-29
Identities = 109/126 (87%), Gaps = 11/126 (9%)
Strand=Plus/Plus
Query 824 TGTGTATTATATAACC-T-TTTTTGTAAGTAAAAGTGAAACTTTACTTATTTA-TTTCAC 880
||||||||||| |||| | |||||||||||||||||||||||||||||||| | ||| |
Sbjct 1002 TGTGTATTATAAAACCTTCTTTTTGTAAGTAAAAGTGAAACTTTACTTATTAACTTTT-C 1060
Query 881 GTTTTGTCTCATTTGATTAAtttttttt-tt-----ATGTAAAGTATTTTCTGATTTTGA 934
|||| || ||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 1061 GTTT-GTATCATTTGATTAGTTTTTTTTCTTCTTTGATGTAAAGTATTTTTTGATTTTGA 1119
Query 935 AAGTAG 940
||||||
Sbjct 1120 AAGTAG 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5