BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476163
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70430.1 | Symbols: | Protein kinase superfamily protein | ... 1611 0.0
> AT1G70430.1 | Symbols: | Protein kinase superfamily protein
| chr1:26545414-26549216 FORWARD LENGTH=2151
Length=2151
Score = 1611 bits (872), Expect = 0.0
Identities = 1080/1177 (92%), Gaps = 27/1177 (2%)
Strand=Plus/Plus
Query 640 CTTGCTCATGGTCATGCTCCATTTTCAAAATATCCACCTATGAAGGTGCTATTAATGACA 699
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 692 CTTGCTCATGGTCATGCCCCATTTTCCAAATATCCACCTATGAAGGTGCTACTAATGACA 751
Query 700 TTACAAAATGCTCCTCCTCGTCTTGACTATGACAGAGATAAGAAATTCTCAAAGTCGTTT 759
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 752 TTACAAAATGCACCTCCTCGTCTAGACTATGACAGAGATAAGAAATTCTCAAAGTCATTT 811
Query 760 AGAGAGTTAATCGCAGCCTGCTTAGTTAAAGATCCAAAAAAGCGTCCAACTGCAGCAAAA 819
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 812 AGAGAGTTAATCGCAGCGTGCTTAGTTAAAGATCCGAAAAAGCGTCCAACTGCAGCAAAA 871
Query 820 CTTCTGAAACACCCTTTCTTCAAACATGCTCGGTCTACAGATTATTTGTCCCGTAAAATT 879
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CTTCTGAAACATCCTTTCTTCAAACATGCTCGGTCTACAGATTATTTGTCCCGTAAAATT 931
Query 880 CTTCATGGTCTTTCTCCGCTTGGTGAACGTTTTAAAAAGCTCAAGGAGGCGGAGGCTGAG 939
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 932 CTTCATGGTCTTTCTCCACTTGGTGAACGTTTTAAAAAGCTCAAGGAGGCAGAGGCTGAG 991
Query 940 TTGTTTAAAGGCATAAATGGTGAGAAAGAACAGTTATCTCAGCATGAGTATATGAGAGGA 999
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 992 TTGTTCAAAGGCATAAATGGTGACAAAGAACAGTTGTCTCAGCATGAGTATATGAGAGGA 1051
Query 1000 ATTAGTGCTTGGAATTTTGATCTCGAAGAC-TTGAGGAGGCAGG---CA---GCAATTAT 1052
|||||||||||||| |||||||| |||| | ||||| ||||||| || | ||||||
Sbjct 1052 ATTAGTGCTTGGAACTTTGATCTTGAAG-CATTGAGAAGGCAGGCATCACTTGTAATTAT 1110
Query 1053 TCCGAATGATGAAATGTGCAATTCAGAGATTCAGGAACTGAACAAAAATGGAGATGTACC 1112
||| ||||| ||||| | ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1111 TCCAAATGAAGAAATCTATAATTCAGAGATACAGGAACTGAACAGAAATGGAGATGTACC 1170
Query 1113 AAAAGGAAAGCCAGTGATGCAAAGGTCACAGACTATGCCTTTGGAAtttttttCAG--AA 1170
||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||| ||
Sbjct 1171 AAAAGGAAAACCAGTGATACAAAGGTCACAGACTATGCCTTTGGAATATTTCTCAGAAAA 1230
Query 1171 ---AAG-GATATGATGAGTGAGAGTTA-CAGTCAATTAACCGGTTCATTACTTCCTTCAT 1225
||| |||||| |||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 1231 GGCAAGTGATATGGTGAGTGAGAG-TAGCAGTCAATTAACCGGTTCATTACTTCCTTCGT 1289
Query 1226 TCCATCGCAAATTCCTCCCGACTATTGGAAATGCATGTTGCTCGAGCGATGGAGTTGCAG 1285
| |||||||||||||||||| || |||| ||||||||| |||||||||| ||| ||||
Sbjct 1290 TTCATCGCAAATTCCTCCCGGCTCTTGGCAATGCATGTAACTCGAGCGATAGAGCAGCAG 1349
Query 1286 AGAAGCTCGCTCTTGGAA-AGCCACATC-A--ACTAGAACCATTAGCGGATACAGAGCAA 1341
||||||||||| || ||| |||||| || | |||| | ||||||||||||||| || ||
Sbjct 1350 AGAAGCTCGCT-TTTGAAGAGCCACGTCAAGTACTACACCCATTAGCGGATACAAAGAAA 1408
Query 1342 ATTGGAAAAGCAGGAAGTG---AGCAGGAGAAACCAAAAAATGGTTACGCAGTTAGTCCT 1398
||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1409 ATTAGAAAAGCAGGAAGTGATCAGCAGGAGAAACCAAAAAATGGTTACGCAGATAGTCCT 1468
Query 1399 GTGAACCGTGAATCTTCCAC---ATCAAAGGAACCATTAGCAGACACAAAGCAAATTAGA 1455
|||||||||||||||||||| |||||||||||||||||| || ||||||||| |||||
Sbjct 1469 GTGAACCGTGAATCTTCCACATTATCAAAGGAACCATTAGCGGATACAAAGCAAGTTAGA 1528
Query 1456 AAAGCAGCAAATGAGCAGGAGAAACCAAAAAACGGCTATGTAGTTAGTCCTGTGAACGGT 1515
||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 1529 AAACCAGGAAATGAGCAGGAGAAACCAAAAAACGGCTATATAGTTAGTCATGTGAACCGT 1588
Query 1516 GAATCTTCCCCATCAAAGGAAATCCTCCCACTATTACAGAGTCTTCTGGTTCAGAATGAC 1575
||||||||| ||||| |||||||||||||||| || |||||||| |||||||||||||||
Sbjct 1589 GAATCTTCCACATCAGAGGAAATCCTCCCACTGTTGCAGAGTCTCCTGGTTCAGAATGAC 1648
Query 1576 ATTCAAAGGGCGAAAGTAATAAGGTTAATTAGATTTTTTGATCGAACTGCGGGAACTGAA 1635
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 1649 ATTCAAAGGGCGCAAGTAATCAGGTTAATTAGATTTTTTGATCGAACTGCGAAAACGGAA 1708
Query 1636 AATCCGATCTCAAAAACCGAAGGAGTGCAGGAGAAAGATCTACAATCTCAAGTTCAGTTT 1695
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1709 AATCCAATCTCAAAAACCGAAGGAGTGCAGGAGAAAGATCTGCAATCTCAAGTTCAGTTT 1768
Query 1696 TTGGAGCAAAGTGTTGAGAAGCTTGTAGAGGAAGTTCAGAGAAGAAAAGAAATAAATAGT 1755
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1769 TTGGAGCAAAGTGTTGAGAAGCTTGTAGAGGAAGTTCAGAGAAGAAAAGATATAAATAGT 1828
Query 1756 CAGCTAGAACAACAGATCAGCTCTCTGATTagcagca 1792
|||||||| ||||||||||||||||||||||||||||
Sbjct 1829 CAGCTAGAGCAACAGATCAGCTCTCTGATTAGCAGCA 1865
Score = 929 bits (503), Expect = 0.0
Identities = 565/595 (95%), Gaps = 4/595 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGTTCATCAACGAAGA-GATTTCCTCTCTATGCTAAAGATTATGAGCTCTTTGA 59
|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 95 ATGGCTGGTTCATCAACGAA-ACGATTTCCTCTATATGCTAAAGATTATGAGCTCTTTGA 153
Query 60 AGAGGTAGGTGAAGGTGTTAGTGCTACTGTTTACAAAGCTCGTTGCATTGCTCTTAACGA 119
||||||||| |||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 154 AGAGGTAGGAGAAGGTGTTAGTGCTACTGTGTATAGAGCTCGTTGCATTGCTCTTAACGA 213
Query 120 GATTGTCGCCGTTAAAATCTTGGACCTCGAAAAATGCAGAAACGATTTGGAAACTATACG 179
||||||||| |||||||||||||| |||||||||||||| || ||||||||||| |||||
Sbjct 214 GATTGTCGCTGTTAAAATCTTGGATCTCGAAAAATGCAGGAATGATTTGGAAACAATACG 273
Query 180 CAAGGAAGTTCATATTATGAGTTTAATAGATCATCCGAATTTATTGAAAGCGCATTGTTC 239
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 274 CAAGGAAGTTCATATAATGAGTTTGATTGATCATCCGAATTTATTGAAAGCGCATTGTTC 333
Query 240 GTTTATCGATC-GTAGTAGTTTGTGGATTGTAATGCCTTATATGTCTGGTGGTTCTTGTT 298
||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 334 GTTTATCGA-CAGTAGTAGTTTGTGGATTGTAATGCCTTATATGTCGGGTGGTTCTTGTT 392
Query 299 TTCATTTAATGAAATCTGTATATCCGGAAGGTCTTGAGCAACCTATAATCGCTACTTTGT 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 393 TTCATTTAATGAAATCTGTATATCCGGAAGGTCTTGAGCAACCTATAATTGCTACTTTGT 452
Query 359 TAAGGGAAGTGCTTAGAGCGCTTGTTTATCTTCATCGACAAGGTCACATCCATAGAGATG 418
| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 453 TGAGGGAAGTGCTTAAAGCTCTTGTTTATCTTCATAGACAAGGTCACATCCATAGAGATG 512
Query 419 TTAAGGCTGGGAATATATTGATTCACTCAAAAGGCGTAGTTAAACTTGGAGACTTTGGAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TTAAGGCTGGGAATATATTGATTCACTCAAAAGGCGTAGTTAAACTTGGAGACTTTGGAG 572
Query 479 TTTCAGCATGTATGTTTGATAGCGGAGAAAGGATGCGTACTAGGAATACATTCGTTGGGA 538
|||||||||||||||||||||| |||||||| |||| || |||||||||||||||||||
Sbjct 573 TTTCAGCATGTATGTTTGATAGTGGAGAAAGAATGCAAACAAGGAATACATTCGTTGGGA 632
Query 539 CGCCTTGTTGGATGGCACCTGAGGTTATGCAGCAAGTAGATGGATATGATTTCAA 593
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 633 CTCCTTGTTGGATGGCACCTGAGGTTATGCAGCAACTAGATGGATATGATTTCAA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89808775005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5