BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476164
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70440.1 | Symbols: SRO3 | similar to RCD one 3 | chr1:26548... 1419 0.0
> AT1G70440.1 | Symbols: SRO3 | similar to RCD one 3 | chr1:26548952-26550520
REVERSE LENGTH=1114
Length=1114
Score = 1419 bits (768), Expect = 0.0
Identities = 925/1000 (93%), Gaps = 13/1000 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCACAAGTCGAGATCGAAGATCAAGAATCCGTCACCAATTTAGACAACGGCGAA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGGCACAAGTCGAGATCGAAGATCAAGAATCCGTCACGAATTTAGACAACGGCGAA 60
Query 61 ATCATCAACCCCGGT-T-C-TCAAC-CACCTAACTTCTCCGGCGAAT-CAACGACTCTTC 115
|||||||||||| | | | |||| |||||||||||||||||| || |||||| |||||
Sbjct 61 ATCATCAACCCC-ATCTCCGACAACGCACCTAACTTCTCCGGCG-ATGCAACGATTCTTC 118
Query 116 TCCATGAATCCACCTTCGAACACGACCTCGTCAAAAACTGTTTCCTCACCGGAATGGGAT 175
||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||||||| |
Sbjct 119 TCCGTGAAGCCACCTTCGAACACAACCTCATCAAAAACTGTTTCCTCTCCGGAATGGGCT 178
Query 176 CATTCGCCAACGAGACAACAATCGTCACCGTACGAAAAAACTCAACGGAGAGAAGAATCA 235
||||||||| ||| ||||||||||||||||||||||||| || |||| ||||| |||||
Sbjct 179 CATTCGCCACCGAAACAACAATCGTCACCGTACGAAAAATCTTAACGCAGAGATTAATCA 238
Query 236 CAACCAAAGCTAAATTCGCTGTGTTCAAGATTTTCACAGAAGCTATGACGAAGAAGAACA 295
|||| |||||||||||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 239 CAACGAAAGCTAAATTCGCTGTGTTCAAGCTTTTCACAGAAGCTATGAAGAGGAAGAACA 298
Query 296 ACGGAGACGCCAATGTTAAATACGGATGGTACTCTGGTTCCAAAGAAGAGATCGATCGTG 355
|||| |||| ||| ||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 299 ACGGTTACGCGAATATTAGGTACGGTTGGTACTCTGGTTCTAAAGAAGAGATCGATCGTG 358
Query 356 TTATTACGTATGGATTTAGTAATCGTGAGATCGAGAAATTCGAAAACGACGTCGGATCTC 415
||||||||||||| ||||||||| | |||||| ||||| |||||||||||||||||||||
Sbjct 359 TTATTACGTATGGGTTTAGTAATAGAGAGATCAAGAAAGTCGAAAACGACGTCGGATCTC 418
Query 416 ACGGTGTTGGAATTCATCTTGTTCATCATCGATACTCTCTCGCTGCGGCTTTAGTTGGTG 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 ACGGTGTTGGAATTCATCTTGTTCATCATCGTTACTCTCTCGCTGCGGCTTTAGTTGGTG 478
Query 476 AAGGTGATGAAGAAGGGATAAAGAATATTCTCTTATGCCGTGTGATTCTTGGTAAACCGG 535
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGGTGATGAAGAAGGGATCAAGAATATTCTCTTATGCCGTGTGATTCTTGGTAAACCGG 538
Query 536 AACAAATCGA-AGCTGGTTCTAAACAATCGTACCCGAGTTCGAACCGATTTGATTCTGGT 594
||||||| | | | |||||||||||||| ||||| ||||| |||| |||||||||||||
Sbjct 539 AACAAATTGTGACC-GGTTCTAAACAATCTTACCCAAGTTCAAACCAATTTGATTCTGGT 597
Query 595 GTTGATAATCTTGAGAATCCAAGAAAATATGTGATTTGGAGCTCTAACATGAATTCTTAC 654
|||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 598 GTTGATAATCTTGAGAATCCGAGAAAATATGTGATTTGGAGTTGTAACATGAATTCTTAC 657
Query 655 ATTCTTCCTACTTATATCGTCAGTTTCAAATCTCCTCTTCTCAGAGGTCTAATTGGAAGA 714
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 ATTCTTCCAACTTATATCGTCAGTTTCAAATCTCATCTTCTCAGAGGTCTAATTGGAAGA 717
Query 715 GCAAGGTCACCATGTGTTAGCTTCTCTGCTCTTATGTCAATTCTTTCGAAGTCACTTGAT 774
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 718 GCAAGGTCACCATGTGTTAGCTTCTCTGTTCTTATGTCAATTCTTTCAAAGTCACTTGAC 777
Query 775 GTTACAAGAATGAACTTGATTTTGACAAGTTATGATGATTTTAGGAAACGGAAGCTGAGA 834
| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 778 GCTGCAAGAATGAACTTGATTTTGACTAGTTATGATGATTTTAGGAAACGGAAACTGAGG 837
Query 835 AGAGAGCAGCTAGTTAGGAAGATTAGGGAAGTGGTTGGAGATCA-TCTTCTTTTCAAGAT 893
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 838 AGAGAGCAGCTAGTTAGGAAGATTAGGGAAGTGGTTGGAGA-CAATCTTCTTTTCAAGAT 896
Query 894 ACTCAAGAATCAGAGGCGTTAAAAAGTGTGTTAGGAGGACGTTACAGATTTTACCTGAAG 953
||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||
Sbjct 897 ACTCAAGAATCAGAGGCGTTAAAAACTGTAT-AGGAGGACGTTACAGATTT-ACCTGAAT 954
Query 954 TAGCCAAAGTTTAACAGAAGCTGATGATGCGTAATGGAGT 993
||||||||||| ||||| |||||||||| |||||||||||
Sbjct 955 TAGCCAAAGTTCAACAGCAGCTGATGATACGTAATGGAGT 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5