BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476166
Length=2503
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70460.1 | Symbols: RHS10 | root hair specific 10 | chr1:265... 2612 0.0
AT1G70450.1 | Symbols: | Protein kinase superfamily protein | ... 1360 0.0
> AT1G70460.1 | Symbols: RHS10 | root hair specific 10 | chr1:26555846-26559284
FORWARD LENGTH=2732
Length=2732
Score = 2612 bits (1414), Expect = 0.0
Identities = 1634/1738 (94%), Gaps = 24/1738 (1%)
Strand=Plus/Plus
Query 773 GGCTATCAAGGGAAGACTATGGTCGGTTTTGCAGTAGCCGGTTTCGCAGTCATTGCCTTG 832
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 997 GGCTATCAAGGGAAGACTATGGCCGGTTTTGCAATAGCCGGTTTCGCAGTCATCGCCTTG 1056
Query 833 ATGGCTGTTGTGTTCTTAGTCAGAAGAAAGAAAAAGAGAAACATTGATGCATACAGTGAC 892
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1057 ATGGCCGTTGTGTTCTTAGTCAGAAGAAAGAAGAAGAGAAACATTGATGCCTACAGTGAC 1116
Query 893 TCACAATACTTGCCTCCTTCAAACTTCTCCATCAAATCAGATGGATTCTTATACGGTCAA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TCACAATACTTGCCTCCTTCAAACTTCTCCATCAAATCAGATGGATTCTTATACGGTCAA 1176
Query 953 AATTCTACAAAGGTATACTCTGGTCCTGGTGGTTACAATTCACAACAACAATCAAATTCC 1012
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AATCCTACAAAGGGATACTCTGGTCCTGGTGGTTACAATTCACAACAACAATCAAATTCC 1236
Query 1013 GGAAATAGCTTCGGCAGCCAAC---GAGGAGGAGGTTATACACGGTCAGGGAGTGCGCCT 1069
||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 1237 GGAAACAGCTTCGGCAGCCAACGAGGAGGAGGAGGTTATACACGGTCAGGGAGCGCACCT 1296
Query 1070 GATTCAGCGGTGATGGGAAGTGGTCAGACACATTTCACCTATGAAGAGCTAACAGATATA 1129
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 1297 GATTCAGCAGTGATGGGAAGTGGTCAAACACATTTCACATATGAAGAGCTAACGGACATA 1356
Query 1130 ACAGAAGGATTTTCTAAGCAAAACATACTTGGAGAAGGAGGGTTTGGTTGTGTCTACAAA 1189
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||
Sbjct 1357 ACAGAAGGATTTTCTAAGCATAACATACTTGGAGAAGGAGGTTTTGGTTGTGTGTATAAA 1416
Query 1190 GGTAAACTAAATGATGGAAAACTTGTTGCCGTTAAGCAGCTTAAGGTTGGTAGCGGACAA 1249
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1417 GGTAAATTAAATGATGGAAAACTTGTTGCTGTTAAGCAGCTTAAGGTTGGTAGCGGACAA 1476
Query 1250 GGTGACCGTGAGTTTAAGGCAGAGGTTGAGATCATTAGCCGTGTTCATCATCGCCATTTG 1309
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1477 GGTGACCGTGAGTTTAAGGCGGAGGTTGAGATTATTAGCCGTGTTCATCATCGCCATTTG 1536
Query 1310 GTTTCTCTTGTTGGCTACTGCATTGCGGATTCAGAGAGATTGCTTATCTATGAGTATGTT 1369
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1537 GTTTCTCTTGTTGGATACTGCATTGCGGATTCAGAGAGATTGCTTATCTATGAATATGTT 1596
Query 1370 CCTAACCAAACCTTGGAGCATCATTTGCATGGGAAGGGAAGGCCTGTCCTTGAATGGGCT 1429
||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1597 CCTAACCAAACATTGGAACATCATTTGCATGGGAAGGGAAGGCCAGTACTTGAATGGGCT 1656
Query 1430 AGGAGAGTTAGGATTGCTATAGGTTCTGCCAAAGGTTTGGCGTATTTGCACGAAGACTGT 1489
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1657 AGGAGAGTCAGAATTGCTATAGGTTCTGCCAAAGGTTTGGCGTATTTACACGAAGACTGT 1716
Query 1490 CACCCAAAAATCATTCACAGGGACATAAAGTCCGCAAACATCTTGCTGGACGATGACTTT 1549
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1717 CACCCAAAAATCATTCACAGGGACATAAAGTCCGCTAACATCTTGCTGGACGATGA---- 1772
Query 1550 GGCTCTGAAGTTTTACTTGTTGCTGACTTCGGACTTGCCAAACTCAATGATTCAACCCAA 1609
| | ||||| | | ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1773 -G-TTTGAAG--CT-CAGGTTGCTGACTTTGGACTTGCCAAACTCAATGATTCAACACAA 1827
Query 1610 ACTCATGTATCAACTCGCGTTATGGGAACCTTTGGGTACTTGGCACCCGAATATGCACAA 1669
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1828 ACTCATGTATCAACTCGCGTTATGGGAACCTTCGGGTACTTGGCACCAGAATATGCACAA 1887
Query 1670 AGTGGAAAGCTGACTGATAGATCAGATGTTTTCTCGTTTGGGGTTGTTCTCTTAGAGCTT 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 AGTGGAAAGCTGACTGATAGATCAGATGTTTTCTCGTTTGGGGTTGTTCTCTTAGAGCTT 1947
Query 1730 ATAACCGGACGCAAACCAGTTGACCAGTACCAGCCTTTGGGAGAAGAGAGTTTGGTTGAA 1789
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1948 ATAACAGGACGCAAACCTGTTGACCAATACCAGCCTTTGGGAGAAGAGAGTTTGGTTGAA 2007
Query 1790 TGGGCTCGTCCACTGCTTCACAAAGCCATTGAGACTGGCGATTTCAGCGAACTAGTTGAT 1849
||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 2008 TGGGCTCGTCCTCTGCTTCACAAAGCCATTGAGACCGGTGATTTCAGTGAACTAGTTGAT 2067
Query 1850 AGACGGCTTGAAAAGCATTACGTGGAGAATGAAGTTTTCAGAATGATTGAAACAGCTGCT 1909
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2068 AGACGGCTCGAAAAGCATTATGTGGAGAATGAAGTTTTCAGAATGATTGAAACAGCTGCT 2127
Query 1910 GCTTGTGTTAGGCATTCTGGTCCAAAACGTCCACGCATGGTTCAGGTTGTGAGAGCACTG 1969
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2128 GCTTGTGTTAGGCATTCAGGTCCAAAACGTCCACGTATGGTTCAGGTTGTGAGAGCATTG 2187
Query 1970 GATAGTGAAGGGGACATGGGAGATATCAGCAACGGAAACAAAGTGGGACAAAGCAGTGCT 2029
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2188 GATAGTGAAGGGGACATGGGAGATATCAGCAATGGTAACAAAGTGGGACAAAGCAGTGCT 2247
Query 2030 TATGACTCTGGTCAGTATAACAATGACACCATGAAGTTCAGGAAAATGGCGTTTGGTTTT 2089
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2248 TATGACTCTGGTCAGTATAATAATGACACCATGAAGTTCAGGAAAATGGCATTTGGTTTT 2307
Query 2090 GACGATAGCTCGGATTCCGGGATGTACAGTGGAGAGTACTTTGCCCAAGGCTCCCGGAAA 2149
||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||
Sbjct 2308 GACGATAGCTCGGATTCCGGGATGTACAGTGGAGACTACTCTGTCCAAGACTCCCGGAAA 2367
Query 2150 GGATCCAACGGAGCTTCCTCTGAGTTCACGAGGAATGAATCCGAGAACCGAAACTTCAAT 2209
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2368 GGATCCAACGGAGCTTCCTCTGAGTTCACAAGGAATGAAACCGAGAACCGAAACTTCAAT 2427
Query 2210 AACCGGCGCTTCTGATCCAAAAATAGGTCAACTTATACCTTATTATCCCTCATGCTTGAG 2269
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2428 AACCGGCGCTACTGATCCAAAAATAGGTCAACTTATACCTAATCATCCCTCATGCTTGAG 2487
Query 2270 CTCTTTGTACAGCATTAATGCTCTCTTTGTACCtttttttGTGTGA-GATACTTTTCTTG 2328
||||||||||||||||||||||||||||| | |||||| |||||| ||||| |||||||
Sbjct 2488 CTCTTTGTACAGCATTAATGCTCTCTTTGAA--TTTTTT-GTGTGAAGATACGTTTCTTG 2544
Query 2329 CTAGC---TACATTTAGTTTTGCTCCATAATGGCCATTTGCCTGAAAAGACTTATTATAG 2385
||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2545 CTAGCCGCTACCTTTAGTTTTGCTCCATAATTCCCATTTGCCTCAAAAGACTTATTATAG 2604
Query 2386 GTGAGAACAGaaaaaagcaaccaaaaaggaaaaaGGACTCATAATAGTTCTCAAAGAGTG 2445
||||||||||| ||||||||||||||| ||||||| |||||||| |||||| ||||||||
Sbjct 2605 GTGAGAACAGAGAAAAGCAACCAAAAAAGAAAAAGAACTCATAAAAGTTCTTAAAGAGTG 2664
Query 2446 Attttgaatctgaattgtttgcttttgtttgtttctctttgttgagtttcggattttt 2503
|||| |||||| | ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 2665 ATTT-GAATCT---T-GTTTGCTTTTGTTTGCTTCTCTGTGTTGAGTTTCGGATTTTT 2717
Score = 409 bits (221), Expect = 8e-113
Identities = 390/464 (84%), Gaps = 42/464 (9%)
Strand=Plus/Plus
Query 296 TCTCCTCCGCCAGTTGTCTCAT--CC-CCTCCTCCGCCGCCTGATTCATCTCCTCCTCCG 352
|||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 487 TCTCCTCCGCCAACTGTCTCATCCCCTCCTCCTCCGCCGCTTGATTCATCTCCTCCTCCG 546
Query 353 CTTG-TTGATTTAACCCCGCCGCCAAGTTCTTCACCTCCACCCCCTCCGGCAGATGCTCC 411
| | |||||||||||||||||||||||| | | || || || || ||||||||||
Sbjct 547 C-CGCCTGATTTAACCCCGCCGCCAAGTTC-T---C-CC-CCTCC-CC--CAGATGCTCC 596
Query 412 GCCGCCGGTTCCCATTGTGTTACCTCCACCTCCACCTTCACCGGA-AGACTCACCGCCGC 470
||||||| ||||||| ||| | | | ||| | |||| || ||||||||||||||
Sbjct 597 GCCGCCGATTCCCATCGTG-T---T-C-CCT----C--CACC-GATAGACTCACCGCCGC 643
Query 471 CGGAGTCCACCAACTCCCCTCCACCTCCGGAGGTGTTTGAACCACCACCGCCTCCTCCCA 530
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 644 CCGAGTCCACCAACTCCCCTCCACCTCCAGAGGTGTTTGAACCACCACCGCCTCCGGCCG 703
Query 531 ATG--CA-GAAAGCCCTCCTGCTCCTCCGCCTCCGGAACAATTACCTCCTCCAGCGTCTT 587
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 704 ATGAAGACGAAAGCCCTCCTGCTCCTCCACCTCCGGAACAATTACCTCCTCCAGCGTCTT 763
Query 588 CACCGCAAGCTGGACCCAAAACACCGGAAAAACACCCTCCGGGACCTA-CAAAATCTCCT 646
||||||||| |||||||||| ||| ||||||||| ||| ||||| | | | |||||||
Sbjct 764 CACCGCAAGGAGGACCCAAAAAACCAAAAAAACACCATCCAGGACC-AGCCACATCTCCT 822
Query 647 --T-C------AGCACCCGCCATATCTCCTCCAGCTCCTCCAAACGCCCCGCCGCATAAC 697
| | |||||| |||| ||||||||| |||||||||||||| ||||| | ||||
Sbjct 823 CCTGCTCCTTCAGCACCAGCCACATCTCCTCCTGCTCCTCCAAACGCGCCGCCACGTAAC 882
Query 698 ACTTCTCACGCACTACCACCTAAGTCTACCGCTGCAGGTGGACC 741
| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 883 AGTTCCCACGCACTACCACCTAAGTCTACCGCTGCAGGTGGACC 926
Score = 156 bits (84), Expect = 1e-36
Identities = 129/150 (86%), Gaps = 5/150 (3%)
Strand=Plus/Plus
Query 163 AATGTCAGATTCGCCGAGTTCTTCTCCACCAGCACCGTCTGCGGATTCCGCTCCACCCCC 222
|||||| || ||||| | |||||||||||||||||| || || ||||||||||| || ||
Sbjct 309 AATGTCGGACTCGCCAACTTCTTCTCCACCAGCACCATCCGCTGATTCCGCTCCGCCGCC 368
Query 223 GGATAGCTCGA-CCGGCGGATC--C-GCCCCTCCACCTACGGATTCAGCACCACCTCCTA 278
||||| ||| | ||| |||||| | || |||||||||||||||||||||||||||||||
Sbjct 369 GGATACCTC-ATCCGACGGATCTGCTGCTCCTCCACCTACGGATTCAGCACCACCTCCTA 427
Query 279 GCCCGCCGGCTGATTCATCTCCTCCGCCAG 308
| || ||||||||||||||||| || ||||
Sbjct 428 GTCCACCGGCTGATTCATCTCCGCCTCCAG 457
> AT1G70450.1 | Symbols: | Protein kinase superfamily protein
| chr1:26552576-26554437 FORWARD LENGTH=1185
Length=1185
Score = 1360 bits (736), Expect = 0.0
Identities = 905/984 (92%), Gaps = 21/984 (2%)
Strand=Plus/Plus
Query 1070 GATTCAGCGGTGATGGGAAGTGGTCAGACACATTTCACCTATGAAGAGCTAACA-GATAT 1128
||||||||||||||||||||||||||||| ||||| |||||||||||||| | | || ||
Sbjct 76 GATTCAGCGGTGATGGGAAGTGGTCAGACTCATTTTACCTATGAAGAGCT-AGAGGACAT 134
Query 1129 AACAGAAGGATTTTCTAAGCAAAACATACTTGGAGAAGGAGGGTTTGGTTGTGTCTACAA 1188
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 135 AACAGAAGGGTTTTCTAAGCAAAACATACTTGGAGAAGGAGGTTTTGGTTGTGTCTACAA 194
Query 1189 AGGTAAACTAAATGATGGAAAACTTGTTGCCGTTAAGCAGCTTAAGGTTGGTAGCGGACA 1248
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 195 AGGTAAACTAAAAGATGGAAAACTTGTTGCTGTTAAGCAGCTTAAGGTTGGTAGCGGACA 254
Query 1249 AGGTGACCGTGAGTTTAAGGCAGAGGTTGAGATCATTAGCCGTGTTCATCATCGCCATTT 1308
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 255 AGGAGACCGTGAGTTTAAGGCGGAGGTTGAGATTATTAGCCGTGTTCATCATCGCCATTT 314
Query 1309 GGTTTCTCTTGTTGGCTACTGCATTGCGGATTCAGAGAGATTGCTTATCTATGAGTATGT 1368
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GGTATCGCTTGTTGGATACTGCATTGCGGATTCAGAGAGATTGCTTATCTATGAGTATGT 374
Query 1369 TCCTAACCAAACCTTGGAGCATCATTTGCATGGGAAGGGAAGGCCTGTCCTTGAATGGGC 1428
|||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 375 TCCTAACCAAACATTGGAGCATCATTTGCATGGGAAGGGTAGGCCAGTGCTTGAATGGGC 434
Query 1429 TAGGAGAGTTAGGATTGCTATAGGTTCTGCCAAAGGTTTGGCGTATTTGCACGAAGACTG 1488
||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 435 TAGGAGAGTCAGAATCGCTATAG-TTCTGCCAAAGGTTTGGCGTATTTGCACGAAGACTG 493
Query 1489 T----CACCCAAAAATCATTCACAGGGACATAAAGTCCGCAAACATCTTGCTGGACGATG 1544
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 494 TAAGTCACCCAAAAATCATTCACAGGGACATAAAGTCCGCTAACATCTTGCTGGACGATG 553
Query 1545 ACTTTGGCTCTGAAGTTTTACTTGTTGCTGACTTCGGACTTGCCAAACTCAATGATTCAA 1604
| |||| ||||| | ||||||||||| |||||||||||| |||||||| |||
Sbjct 554 AGTTTG------AAGTTC-AG--GTTGCTGACTTTGGACTTGCCAAAGTCAATGATACAA 604
Query 1605 CCCAAACTCATGTATCAACTCGCGTTATGGGAACCTTTGGGTACTTGGCACCCGAATATG 1664
| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 605 CACAAACTCATGTCTCAACTCGCGTTATGGGAACCTTCGGGTACTTGGCACCAGAATATG 664
Query 1665 CACAAAGTGGA-AAGCTGACTGATAGATCAGATGTTTTCTCGTTTGGGGTTGTTCTCTTA 1723
||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 665 CACAAAGTGGACAA-CTTACTGATAGATCAGATGTTTTCTCGTTTGGAGTTGTTCTCTTA 723
Query 1724 GAGCTTATAACCGGACGCAAACCAGTTGACCAGTACCAGCCTTTGGGAGAAGAGAGTTTG 1783
||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 724 GAGCTTATAACTGGACGCAAACCTGTTGACCGGAACCAGCCTTTGGGAGAAGAGAGTTTG 783
Query 1784 GTTGAATGGGCTCGTCCACTGCTTCACAAAGCCATTGAGACTGGCGATTTCAGCGAACTA 1843
|||| ||||||||||||||| ||| | |||||||||||||| || |||||||| ||||||
Sbjct 784 GTTGGATGGGCTCGTCCACTACTTAAAAAAGCCATTGAGACCGGTGATTTCAGTGAACTA 843
Query 1844 GTTGATAGACGGCTTGAAAAGCATTACGTGGAGAATGAAGTTTTCAGAATGATTGAAACA 1903
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 844 GTTGATAGACGGCTCGAAAAGCATTACGTGAAGAATGAAGTTTTCAGAATGATTGAAACG 903
Query 1904 GCTGCTGCTTGTGTTAGGCATTCTGGTCCAAAACGTCCACGCATGGTTCAGGTTGTGAGA 1963
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 904 GCTGCTGCTTGTGTTAGGTATTCAGGTCCAAAACGTCCACGCATGGTTCAGGTTTTGAGA 963
Query 1964 GCACTGGATAGTGAAGGGGACATGGGAGATATCAGCAACGGAAACAAAGTGGGACAAAGC 2023
||||| ||||||||||| ||||||||||||||| |||| |||| ||||||||||||||||
Sbjct 964 GCACTAGATAGTGAAGGAGACATGGGAGATATCTGCAATGGAATCAAAGTGGGACAAAGC 1023
Query 2024 AGTGCTTATGAC---TCTGGTCAG 2044
||| ||| |||| |||||||||
Sbjct 1024 AGTACTTGTGACGACTCTGGTCAG 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124213350868
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5