BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476167
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70470.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 904 0.0
> AT1G70470.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G23530.1);
Has 64 Blast hits to 64 proteins in 22 species: Archae - 0;
Bacteria - 2; Metazoa - 7; Fungi - 10; Plants - 43; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:26559359-26560123
REVERSE LENGTH=765
Length=765
Score = 904 bits (489), Expect = 0.0
Identities = 609/664 (92%), Gaps = 19/664 (3%)
Strand=Plus/Plus
Query 34 ATaaaa-aaaaTGGGAGACCAACCACAAGAGATTCAGCAACCTCTTCTAGTGTATCCATC 92
|||||| |||||||||||||||||||||||| |||||||| | | | ||||||||||||
Sbjct 80 ATAAAATAAAATGGGAGACCAACCACAAGAGTTTCAGCAA-C-C-ACAAGTGTATCCATC 136
Query 93 TActtcttcttcttcttcatcttcttcCTCGCCTTCATCCTCCGTTTCAAGTGGCTCGTT 152
||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 137 TACTTCTTCTTCTACTTCATCTTCTTTCTCGCCTTCATCCTCCGGTTCAAGTGGCTCGTT 196
Query 153 TGGTACAGCATTCATAGTTCTAGCCGCAATCCTTG-TCTTGGCAGCAATGGCTTGTGTGT 211
|||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||
Sbjct 197 TGGTACAGCATTCATAGTTCTAGCCGCAATTCTTGTTC-TGGCAGCACTGGCTTGTGTGT 255
Query 212 TTGGAAGACTATGCAACCGCGGTGGAAAGcaacacaaagacaaaaacaacaacaaaactt 271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 256 TTGGAAGACTATGCAACCGCGGTGGAAAGCAACACAAAGACAAAAACAACAACAAAGCTT 315
Query 272 ccaaacaTGAGAAACCGTCGTCAAAGAAGAGCCGTGAGATCAGACCTGTGGAGCGTGAGC 331
| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 316 CGAAGCATGAGAAACCATCGTCAAAGAAGAGCCGTGAGATTAGACCTGTGGAGCGTGAAC 375
Query 332 CAAGAGAGAGAGGTGATGTGGAGTTTGGGTTCGATATGAAGCGGCCTGGTCCGATGAACA 391
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 376 CAAGAGAAAGAGGTGATGTGGAGTTTGGTTTCGATATGAAGCGGCCTGGTCCTATGAGCA 435
Query 392 AACCCACTGGTCGAAACGGAGGGGACATAGAATTTGGCTTTGATAACAAgagaggaggag 451
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 436 AACCCACTGGTCGAAACGGAGGGGACATAGAATTTGGGTTTGATAACAAGAGAGGAGGAG 495
Query 452 gaggtggaggaggaggaggaggaaaaggagggaAAAGACCACCTCCGGTTATATATTAAC 511
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GTGGTGGTGGAGGAGGTGGAGGAAAAGGAGGGAAAAGACCACCTCCGGTTATATATTAAC 555
Query 512 CATGTGTAAGGCCACCGCAGACACGGTGGTT-CCGACTTCAAGATCCGGTCAGAACACTG 570
||||||||||| ||| ||||||||| |||| ||||||||||| ||||||||||||| ||
Sbjct 556 CATGTGTAAGGTGACCTCAGACACGGAGGTTTCCGACTTCAAGCTCCGGTCAGAACATTG 615
Query 571 TCTTAATAAGACAAGAGAATTTATCA-TGCTTCTTCACTTTATCCTAAT-T--Cttgttt 626
||||||||||||||||||||| |||| ||||| ||||||||||| || | | |||||||
Sbjct 616 TCTTAATAAGACAAGAGAATTCATCAATGCTTGTTCACTTTATCTTATTCTTGCTTGTTT 675
Query 627 gttt--g-t-tt-t---gggtcgtttggttttgtttCATATTGGTATGGAACTTAAATAT 678
|||| | | || | |||||||||||||||||||||||| |||||| |||||| |||
Sbjct 676 GTTTTTGGTCTTGTTTTGGGTCGTTTGGTTTTGTTTCATATGGGTATGAAACTTAGGTAT 735
Query 679 CAAA 682
||||
Sbjct 736 CAAA 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5