BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476172
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70490.1 | Symbols: ATARFA1D, ARFA1D | Ras-related small GTP... 1277 0.0
AT1G23490.1 | Symbols: ATARFA1A, ATARF1, ATARF, ARF1 | ADP-ribo... 693 0.0
AT1G10630.1 | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation fact... 604 3e-172
AT3G62290.1 | Symbols: ATARFA1E, ARFA1E | ADP-ribosylation fact... 536 1e-151
AT5G14670.1 | Symbols: ATARFA1B, ARFA1B | ADP-ribosylation fact... 508 3e-143
> AT1G70490.1 | Symbols: ATARFA1D, ARFA1D | Ras-related small GTP-binding
family protein | chr1:26563924-26565810 REVERSE LENGTH=918
Length=918
Score = 1277 bits (691), Expect = 0.0
Identities = 858/930 (92%), Gaps = 45/930 (5%)
Strand=Plus/Plus
Query 1 CGTCGTCGCGTTtctcttaagcttctctctc-tctctctttcaaatttcgtcgagtctct 59
|||| |||||||||||||||||||||||| | | ||||||||||||||| ||||||||||
Sbjct 4 CGTCATCGCGTTTCTCTTAAGCTTCTCTCACATTTCTCTTTCAAATTTCTTCGAGTCTCT 63
Query 60 ctcgctctctccgtttcttcgcgg--------tctc-g--ctct------c-ttcttcgT 101
|||||||||||||||||||||||| |||| | |||| | ||||||||
Sbjct 64 CTCGCTCTCTCCGTTTCTTCGCGGTCTCTCTCTCTCAGATCTCTCCGAAACATTCTTCGT 123
Query 102 AGTGAAGAAAAATGGGGTTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGG 161
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AGTGAAGCAAAATGGGGTTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGG 183
Query 162 AGATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGC 221
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 184 AGATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACAATCTTGTACAAGC 243
Query 222 TCAAGCTCGGAGAGATTGTCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGG 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TCAAGCTCGGAGAGATTGTCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGG 303
Query 282 AATACAAGAACATCAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCT 341
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AATACAAGAACATTAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCT 363
Query 342 TGTGGAGACACTACTTCCAGAACACTCAGGGTCTTATCTTTGTCGTGGATAGCAACGACA 401
|||||||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||
Sbjct 364 TGTGGAGACACTACTTCCAGAACACTCAAGGTCTAATCTTTGTTGTTGATAGCAATGACA 423
Query 402 GAGACAGAGTTGTTGAGGCTAGAGATGAGCTCCACAGGATGCTGAATGAGGACGAGCTGC 461
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 424 GAGACAGAGTTGTTGAGGCTCGAGATGAACTCCACAGGATGCTGAATGAGGACGAGCTGC 483
Query 462 GTGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAACGCCG 521
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 484 GTGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTG 543
Query 522 CTGAAATCACAGATAAGCTTGGCCTTCATTCCCTCCGTCAGCGTCATTGGTACATCCAGA 581
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 544 CTGAAATCACAGATAAGCTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGA 603
Query 582 GCACATGTGCCACATCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACA 641
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GCACATGTGCCACTTCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACA 663
Query 642 TCGCCGGCAAGGTAACATAAGCATGATGAGGGAGAAATGGTGTTGCATCGAGATGATTCT 701
|||| ||||||| ||| | |||| | || |||||| | |||||||||||||||||||
Sbjct 664 TCGCTGGCAAGG---CAT--G-ATGA-G-GG-AGAAATTGCGTTGCATCGAGATGATTCT 714
Query 702 GTCTGCTGTGTTGGGATATCTCT--GT-TTGGATGCAAGAGAGATTATAAATATTATCTG 758
||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||
Sbjct 715 GTCTGCTGTGTTGGGATCTCTCTCTGTCTTG-ATGCAAGAGAGATTATAAATATTATCTG 773
Query 759 AACCTTTTTGCTATT--GGGTATGTGAATGTTTCTGGTTGATTGTGCAAGTAGATG-TCT 815
|||||||||||| || |||||||||||||||||| | |||||||||||||||| |||
Sbjct 774 AACCTTTTTGCTTTTTTGGGTATGTGAATGTTTCT--T--ATTGTGCAAGTAGATGGTCT 829
Query 816 TGTACCTAAAAATCTACTAGAAGAACCCTTTTTAAATAG-TT--GT--ATTGTACCTGGA 870
||||||||||||| |||||||||||||||||| |||||| || || ||||| ||||||
Sbjct 830 TGTACCTAAAAATTTACTAGAAGAACCCTTTT-AAATAGCTTTCGTGTATTGTGCCTGGA 888
Query 871 TTAATATGATTGATTGTTTTGCTTTCTTGT 900
||||||||||||||||||||||||||||||
Sbjct 889 TTAATATGATTGATTGTTTTGCTTTCTTGT 918
> AT1G23490.1 | Symbols: ATARFA1A, ATARF1, ATARF, ARF1 | ADP-ribosylation
factor 1 | chr1:8336683-8338672 FORWARD LENGTH=982
Length=982
Score = 693 bits (375), Expect = 0.0
Identities = 495/554 (89%), Gaps = 4/554 (1%)
Strand=Plus/Plus
Query 102 AGTGAAGAAAAATGGGGTTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGG 161
||||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 127 AGTGAAGCAGGATGGGATTGTCATTCGCCAAGCTTTTTAGCAGGCTTTTTGCCAAGAAGG 186
Query 162 AGATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGC 221
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 187 AGATGAGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGC 246
Query 222 TCAAGCTCGGAGAGATTGTCACCACCAT-CCCTACTATTGGTTTCAATGTGGAAACTGTG 280
||||||||||||||||||| |||||||| ||| |||||||| ||||||||||| ||||||
Sbjct 247 TCAAGCTCGGAGAGATTGTAACCACCATTCCC-ACTATTGGGTTCAATGTGGAGACTGTG 305
Query 281 GAATACAAGAACATCAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCC 340
|| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 306 GAGTACAAGAACATCAGTTTCACAGTGTGGGATGTCGGCGGTCAGGATAAGATCCGTCCC 365
Query 341 TTGTGGAGACACTACTTCCAGAACACTCAGGGTCTTATCTTTGTCGTGGATAGCAACGAC 400
|||||||| || |||||||||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 366 TTGTGGAGGCATTACTTCCAGAACACCCAAGGTCTTATCTTTGTGGTGGACAGCAATGAC 425
Query 401 AGAGACAGAGTTGTTGAGGCTAGAGATGAGCTCCACAGGATGCTGAATGAGGACGAGCTG 460
|||||| | |||||||||||||||||||| | ||| | ||| |||||||||||||||||
Sbjct 426 AGAGACCGTGTTGTTGAGGCTAGAGATGAATTGCACCGAATGTTGAATGAGGACGAGCTG 485
Query 461 CGTGATGCTGTGT-TGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAACGC 519
||||||||||| | |||| || ||||| |||||||| ||||| |||||||| ||||| ||
Sbjct 486 CGTGATGCTGT-TCTGCTCGTATTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGC 544
Query 520 CGCTGAAATCACAGATAAGCTTGGCCTTCATTCCCTCCGTCAGCGTCATTGGTACATCCA 579
||||| ||||| ||||||||||| || || || |||||||||||||| |||||||||||
Sbjct 545 AGCTGAGATCACGGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCA 604
Query 580 GAGCACATGTGCCACATCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAA 639
||||||||||||||| ||||| || |||||||| |||||||| |||||| | ||||||||
Sbjct 605 GAGCACATGTGCCACTTCAGGCGAGGGGCTTTACGAAGGTCTTGACTGGTTGTCCAACAA 664
Query 640 CATCGCCGGCAAGG 653
||| ||||||||||
Sbjct 665 CATTGCCGGCAAGG 678
> AT1G10630.1 | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation factor
A1F | chr1:3512795-3514729 REVERSE LENGTH=1043
Length=1043
Score = 604 bits (327), Expect = 3e-172
Identities = 472/542 (87%), Gaps = 10/542 (2%)
Strand=Plus/Plus
Query 106 AAGAAAAATGGGG--TTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAG 163
||| ||||||||| || | ||| || ||||| |||||| ||||||||||||||||||||
Sbjct 97 AAGGAAAATGGGGCTTTCA-TTT-GCAAAGCTTTTTAGCCGGCTTTTTGCCAAGAAGGAG 154
Query 164 ATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGCTC 223
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 155 ATGCGAATCCTTATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTC 214
Query 224 AAGCTCGGAGAGATTGTCACCACCA-TCCCTACTAT-TGGTTTCAATGTGGAAACTGTGG 281
||||| || |||||||||||||||| |||| || || ||||| |||||||| || || |
Sbjct 215 AAGCTTGGTGAGATTGTCACCACCATTCCC-ACCATCGGGTTT-AATGTGGAGACGGTTG 272
Query 282 AATACAAGAACATCAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCT 341
| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 273 AGTACAAGAACATCAGCTTCACGGTTTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCT 332
Query 342 TGTGGAGACACTACTTCCAGAACACTCAGGGTCTTATCTTTGTCGTGGATAGCAACGACA 401
||||||||||||||||||| |||||||| ||||| || ||||| || |||||||| ||||
Sbjct 333 TGTGGAGACACTACTTCCAAAACACTCAAGGTCTGATATTTGTTGTTGATAGCAATGACA 392
Query 402 GAGACAGAGTTGTTGAGGCTAGAGATGAGCTCCACAGGATGCTGAATGAGGACGAGCTGC 461
||||| | |||||||| || |||||||| || ||||||||| ||||||| || ||||| |
Sbjct 393 GAGACCGTGTTGTTGAAGCCAGAGATGAACTTCACAGGATGTTGAATGAAGATGAGCTTC 452
Query 462 GTGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAACGCCG 521
| ||||| || ||||||||||||||||||||||| ||||||||||| || ||||| || |
Sbjct 453 GGGATGCAGTATTGCTTGTGTTTGCCAACAAGCAGGATCTTCCAAACGCTATGAATGCTG 512
Query 522 CTGAAATCACAGATAAGCTTGGCCTTCATTCCCTCCGTCAGCGTCATTGGTACATCCAGA 581
|||| || || ||||||||||||||||| || ||||| || || || ||||||||||| |
Sbjct 513 CTGAGATTACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATCCAAA 572
Query 582 GCACATGTGCCAC-ATCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAAC 640
||||||| || || | | ||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 573 GCACATGCGCAACTAGC-GGTGAAGGGCTCTATGAAGGTCTGGATTGGCTTTCCAACAAC 631
Query 641 AT 642
||
Sbjct 632 AT 633
> AT3G62290.1 | Symbols: ATARFA1E, ARFA1E | ADP-ribosylation factor
A1E | chr3:23051650-23053757 FORWARD LENGTH=867
Length=867
Score = 536 bits (290), Expect = 1e-151
Identities = 443/518 (86%), Gaps = 6/518 (1%)
Strand=Plus/Plus
Query 131 AAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAGATGCGAATTCTGATGGTTGGTCTTGAT 190
||| |||| |||| ||| ||||| ||||| |||||||| || || ||||| ||||| |||
Sbjct 128 AAGTTGTTCAGCAAGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGGGTCTCGAT 187
Query 191 GCTGCTGGTAAGACCACTATTTTGTACAAGCTCAAGCTCGGAGAGATTGTCACCACCATC 250
|| ||||||||||| || || ||||||||||||||||| |||||||| || || || ||
Sbjct 188 GCAGCTGGTAAGACTACGATCTTGTACAAGCTCAAGCTTGGAGAGATCGTGACTACGATT 247
Query 251 CCTACTATTGGTTTCAATGTGGAAACTGTGGAATACAAGAACATCAG-TTTCACCGTGTG 309
|| || ||||||||||||||||| |||||||||||||||||||| || ||| ||||||||
Sbjct 248 CCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTT-ACCGTGTG 306
Query 310 GGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACACTACTTCCAGAACACTCA 369
||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 307 GGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGAACACTCA 366
Query 370 GGGTCTTATCTTTGTCGTGGATAGCAACGA-CAGAGACAGAGTTGTTGAGGCTAGAGATG 428
||| ||||||||||| ||||| ||||| || | | ||| | ||||| || || |||||||
Sbjct 367 GGGACTTATCTTTGTGGTGGACAGCAATGATC-GTGACCGTGTTGTGGAAGCCAGAGATG 425
Query 429 AGCTCCACAGGATGCTGAATGAGGACGAGCTGCGTGATGCTGTG-TTGCTTGTGTTTGCC 487
|||| ||||| ||| |||| || || ||| || | ||||||||| || || || |||||
Sbjct 426 AGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTT-CTCGTTTTTGCT 484
Query 488 AACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAAATCACAGATAAGCTTGGCCTT 547
|||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||
Sbjct 485 AACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACCGATAAGCTTGGACTT 544
Query 548 CATTCCCTCCGTCAGCGTCATTGGTACATCCAGAGCACATGTGCCACATCAGGTGAAGGG 607
|| || |||||||| || || |||||||| |||||||||||||| || || || ||||||
Sbjct 545 CACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAGAAGGG 604
Query 608 CTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCGC 645
|||||||| || || ||||||||||| |||||||||||
Sbjct 605 CTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGC 642
> AT5G14670.1 | Symbols: ATARFA1B, ARFA1B | ADP-ribosylation factor
A1B | chr5:4729319-4730495 FORWARD LENGTH=567
Length=567
Score = 508 bits (275), Expect = 3e-143
Identities = 461/552 (84%), Gaps = 7/552 (1%)
Strand=Plus/Plus
Query 113 ATGGGG-TTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAGATGCGAAT 171
|||||| || | |||| | ||| |||| ||| |||||||||||||||| || ||| | ||
Sbjct 1 ATGGGGCTT-AATTTCACAAAGTTGTTCAGCCGGCTTTTTGCCAAGAAAGAAATGAGGAT 59
Query 172 TCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGCTCAAGCTCGG 231
||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 60 TCTGATGGTAGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTATAAGCTGAAGCTTGG 119
Query 232 AGAGATTGTCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGGAATACAAGAA 291
|| || ||||| |||||||| || || || ||||| ||||| ||||| |||||||||||
Sbjct 120 CGAAATCGTCACTACCATCCCGACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAA 179
Query 292 CATCAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACA 351
|||||| ||||| || |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 180 CATCAGCTTCACTGTTTGGGATGTGGGGGGTCAGGACAAGATTCGTCCCTTGTGGAGGCA 239
Query 352 CTACTTCCAGAACACTCAGGGTCTTATCTTTGTCGTGGATAGCAACGACAGAGACAGAGT 411
||| ||||| |||||||| |||||||| || || || |||||||||||||| ||| ||||
Sbjct 240 CTATTTCCAAAACACTCAAGGTCTTATATTCGTGGTTGATAGCAACGACAGGGACCGAGT 299
Query 412 TGTTGAGGCTAGAGATGAGCTCCA-CAGGATGCTGAATGAGGACGAGCTGCGTGATGCTG 470
||| || || || |||||| | || | | ||| |||||||||| || ||| | |||||||
Sbjct 300 TGTGGAAGCGAGGGATGAGTTACATC-GCATGTTGAATGAGGATGAACTGAGGGATGCTG 358
Query 471 TG-TTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAAATC 529
| || ||||||||||| ||||| ||||||||||| || || ||||| || || |||||
Sbjct 359 TCCTT-CTTGTGTTTGCAAACAAACAAGATCTTCCCAACGCAATGAATGCTGCAGAAATA 417
Query 530 ACAGATAAGCTTGGCCTTCATTCCCTCCGTCAGCGTCATTGGTACATCCAGAGCACATGT 589
|| ||||||||||| ||||| || || || || || ||||||||||| || ||||| |||
Sbjct 418 ACTGATAAGCTTGGTCTTCACTCTCTTCGCCAACGCCATTGGTACATTCAAAGCACTTGT 477
Query 590 GCCACATCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCGCCGGC 649
|||||||| || ||||| || |||||||| || || |||||||||||||||||||| |
Sbjct 478 GCCACATCTGGAGAAGGTCTCTATGAAGGCCTTGATTGGCTCTCCAACAACATCGCTACC 537
Query 650 AAGGTAACATAA 661
||||||| ||||
Sbjct 538 AAGGTAA-ATAA 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5