BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476174
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70505.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1482 0.0
> AT1G70505.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G10660.1);
Has 141 Blast hits to 140 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 135; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:26570647-26572463
FORWARD LENGTH=1077
Length=1077
Score = 1482 bits (802), Expect = 0.0
Identities = 897/943 (95%), Gaps = 5/943 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAGAATGTGTTTAGCCGAATTGATTTGTCGAGTTTTGTTACAGGTTCAACTGAA 60
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGTGAAGAATGTGTTTAGCAGAATTGATTTGTCGAGTTTTATTACAGGTTCAACTGAA 60
Query 61 CATACTTGGCAACCAACAATGACTTCGGAGACAAACATTCCAAGTTACTGGCTAAACTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CATACTTGGCAACCAACAATGACTTCGGAGACAAACATTCCAAGTTACTGGCTTAACTGG 120
Query 121 AGATTCTTTGTCTGTGCAATCTTTGTCTTAACGTCTCTGTTTCTATCTTCTTATGTGATT 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 AGATTCTTCGTCTGTGCAATCTTTGTCTTAACGTCTCTGTTTCTATCTTCTTATCTGATT 180
Query 181 TGGAGATATGAAGGACCAAGAACACGCAAAAAACGCGGTGATGATGATCAAAACATGGAA 240
||||||||||||||||||| || |||||| ||| | ||| ||||||||||| | ||||
Sbjct 181 TGGAGATATGAAGGACCAATAAAACGCAAGAAA--C-GTGGTGATGATCAAAGCCTGGAG 237
Query 241 CTAGAACAACTCACAGGAGTTGTATATGATGATGAAACTTGGAATACTTGTGTCAAAGAG 300
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 238 CTAGAACAACTCACAGGAGTTGTATATGATGATGAATCTTGGAATACTAGTGTCAAAGAG 297
Query 301 ATTCATCCGAATTGGTTGTTAGGTTTTCGTGTTTTCGGTTTTGTTGTTCTTCTTGGACTT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 ATTCATCCGAATTGGTTGTTAGGTTTTCGTGTTTTTGGTTTTGTTGTTCTTCTTGGACTT 357
Query 361 ATCTCTGGTAATGCTATTGCTGGTGGAACCGGCATTTTCATCTTCTACACACAATGGACT 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 358 ATCTCTGGTAATGCTATTGCTGATGGAACCGGCATTTTCATCTTCTACACACAATGGACT 417
Query 421 TTCACATTGGTCACAATTTACTTTGGGCTTGCAGCATTGGCGTCCATATACAGATTTAAG 480
||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |
Sbjct 418 TTCACATTGGTCACAATTTACTTTGGGCTTGGATCATTGGTGTCCATATACAGATTTAGG 477
Query 481 TCTGCTGATAATGGTGAAAACAGAATCAGTATAGTGGATGAAGAGCAAGGTTCGTATAGA 540
||| |||||||||||||||||||| | |||||||| |||||||||||||| ||||||||
Sbjct 478 TCTCCTGATAATGGTGAAAACAGAGTTAGTATAGTAGATGAAGAGCAAGGGACGTATAGA 537
Query 541 CCTCCCGGGAATGGCGAAAACTCGAATGTGTTTAAATCTTCATA-CGGACACGATAGAGA 599
||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 538 CCTCCCGGGAATGCCGAAAACTCGAATGTGTTTAAATCTTCA-AGCGGACACGATAGAGA 596
Query 600 AAACAGGTCTACACGTCAGGTTGCAACTACATTGGGTTACATTCATCAGATTCTTTTTCA 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAACATGTCTACACGTCAGGTTGCAACTACATTGGGTTACATTCATCAGATTCTTTTTCA 656
Query 660 AACTTGTGCAGGAGCTGTTTTGCTCACAGATGGTGTGTTTTGGTTCATTATCTACCCTTT 719
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 AACTTGTGCAGGAGCTGTATTGCTCACAGATGGTGTGTTTTGGTTCATTATCTATCCTTT 716
Query 720 TCTTACAGCCAAAGATTTCAATCTCGACTTTTTCATTGTCATTATGCACTCAGTCAATGC 779
||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 717 TCTCACAGCTAAAGATTTCAATCTCGACTTTTTTATTGTGATTATGCACTCGGTCAATGC 776
Query 780 TATTTTCCTCCTCGGTGAAACTTTCTTGAATTCTCTGGGTTTCATACTTTGTGGTATGGA 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TATCTTCCTCCTCGGTGAAACTTTCTTGAATTCTCTGGGTTTCATACTTTGTGGTATGGA 836
Query 840 CCGGCATATTCGTGCTATTCCAATGGATTGTTCATGCATGTGTCTCCTTCTGGTGGCCTT 899
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 837 CCGGCATATTCGTGCTATTTCAATGGATTGTTCATGCTTGTGTCTCCTTTTGGTGGCCTT 896
Query 900 ACCCATTCTTGGATTTGTCATCACCCTATGCCCCTTTATGGTA 942
||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 897 ACCCATTCTTGGATTTGTCATCATCCTATGCTCCTTTATGGTA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5