BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476175
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70510.1 | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidop... 1450 0.0
AT1G23380.2 | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like ho... 525 3e-148
> AT1G70510.1 | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidopsis
thaliana 2 | chr1:26576486-26582431 FORWARD LENGTH=1368
Length=1368
Score = 1450 bits (785), Expect = 0.0
Identities = 941/1016 (93%), Gaps = 12/1016 (1%)
Strand=Plus/Plus
Query 1 ATGGATAGAATGTGTGGTTTTCGTTCGACAGAAGAGTATTCGGAGCAAGCAACGCTGATG 60
|||||||||||||||||||| || ||||| ||||| ||||||||| |||| ||| |||||
Sbjct 150 ATGGATAGAATGTGTGGTTTCCGCTCGACGGAAGACTATTCGGAGAAAGCGACGTTGATG 209
Query 61 ATGCCGTCCGATTATCAATCGCTGATTTGTTCATCCACCGGAGACAATC---G-CGTGTT 116
||||||||||||||||| || ||||||||||| ||||||||||||||| | | ||||
Sbjct 210 ATGCCGTCCGATTATCAGTCTTTGATTTGTTCAACCACCGGAGACAATCAAAGAC-TGTT 268
Query 117 TGGATCCGACGAACTCGCTACGGCTTTATCGTCAGAAG-CGCCTCCACGTATTCGAAAAG 175
||||||||||||||||||||| ||||| || || | || || ||| |||||||||||||
Sbjct 269 TGGATCCGACGAACTCGCTACCGCTTTGTCCTC-GGAGTTGCTTCCGCGTATTCGAAAAG 327
Query 176 CTGATGATAATTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTGTCATCCTTTGTATC 235
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 328 CTGAGGATAATTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTCTCATCCTTTGTATC 387
Query 236 CTCGCTTGCTCCAAACCTACATCGATTGCCAAAAGGTGGGAGCACCTATGGATATAGCGT 295
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 388 CTCGCTTACTCCAAACCTACATCGATTGCCAAAAGGTGGGAGCGCCTATGGAAATAGCGT 447
Query 296 GTATATTGGAAGAGATTCAGCAAGAGAACCATGTGTACAAGAGAGATGTTGCTCCATTAT 355
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 448 GTATATTGGAAGAGATTCAGCGAGAGAACCATGTGTACAAGAGAGATGTTGCTCCATTAT 507
Query 356 CTTGCTTTGGAGATGATCCTGAGCTTGACGAATTCATGGAAACCTACTGTGATATTTTGG 415
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 508 CTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTCATGGAAACCTACTGTGATATATTGG 567
Query 416 TTAAATACAAAGCCGATCTTGCGAGGCCGTTCGACGAGGCTGCAACTTTCATAAACAAGA 475
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 568 TTAAATACAAAACCGATCTTGCGAGGCCGTTCGACGAGGCTACAACTTTCATAAACAAGA 627
Query 476 TCGAAATGCAACTTCAGAACCTGTGCACTGGTCCAGCGTCTGCTACAGCTCTTTCAGATG 535
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 628 TTGAAATGCAGCTTCAGAACTTGTGCACTGGTCCAGCGTCTGCTACAGCTCTTTCAGATG 687
Query 536 ATGGCGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATCACGTAACAGCGCAGGACA 595
|||| |||||||||||||||||||||||||||||||||||| || || ||||| | ||||
Sbjct 688 ATGGTGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATGACATAGCAGCGGATGACA 747
Query 596 GCCAACAACGAAGCAATGACCGGGATCTGAAGGACCAGCTACTACGTAAATTCGGTAGCC 655
|||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 748 GCCAACAAAGAAGCAATGACCGCGATCTGAAGGACCAGCTACTACGCAAATTTGGTAGCC 807
Query 656 ATATCAGTTCATTGAAGCTCGAGTTCTCTaagaagaagaagaaagggaagttaccaagag 715
|||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 808 ATATCAGTTCATTGAAACTCGAGTTCTCTAAAAAGAAGAAGAAAGGGAAGCTACCAAGAG 867
Query 716 aagcaagacaagCGTTGTTCGATTGGTGGAATGTTCATTATAAATGGCCTTACCCCACTG 775
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 868 AAGCAAGACAAGCGTTGCTCGATTGGTGGAATGTTCATAATAAATGGCCTTACCCTACTG 927
Query 776 AAGGTGACAAAATAGCTCTGGCTGGAGAAACAGGATTGAATCAAAAGCAAATCAACAATT 835
|||| ||||||||| ||||||||| ||||||||| ||| ||||||| |||||||||||||
Sbjct 928 AAGGCGACAAAATATCTCTGGCTGAAGAAACAGGTTTGGATCAAAAACAAATCAACAATT 987
Query 836 GGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAGAACATGCCGTTCGATATGA 895
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 988 GGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAGAACATGCCGTTTGATATGA 1047
Query 896 TGGATGATTCTAATGAAACATTCTTAACCGAGGAATGAAAAGAGAGAGATGAGATTGTGC 955
|||| |||||||||||||||||||| |||||| |||||||||||||| |||| |||||||
Sbjct 1048 TGGACGATTCTAATGAAACATTCTTTACCGAGTAATGAAAAGAGAGACATGAAATTGTGC 1107
Query 956 ATTGTATAATTTT-ACA-TAGTTTTCCCGAGAAAAGAAAAGGAGTAAAAAAGCTTT 1009
||||||||||||| ||| | ||||| || ||||||||||| |||||||| |||||
Sbjct 1108 ATTGTATAATTTTTACACT-GTTTTTCCAAGAAAAGAAAAC-AGTAAAAA-GCTTT 1160
> AT1G23380.2 | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like
homeobox gene 6 | chr1:8297291-8302600 REVERSE LENGTH=1306
Length=1306
Score = 525 bits (284), Expect = 3e-148
Identities = 619/778 (80%), Gaps = 34/778 (4%)
Strand=Plus/Plus
Query 177 TGATGATAA-TTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTGTCATCCTTTGTATC 235
||||||||| || ||||| | |||||||||| | ||||||||||||||||||| |||||
Sbjct 336 TGATGATAACGTT-TCTCTAACTGTCATCAAAGCTAAAATCGCTTGTCATCCTTCGTATC 394
Query 236 CTCGCTTGCTCCAAACCTACATCGATTGCC-----AAA-AGGTGGGAGCACCTA-TGGAT 288
||||||| || ||| | ||||||||||||| ||| |||| |||||||| | |||
Sbjct 395 CTCGCTTACTTCAAGCTTACATCGATTGCCAAAAGAAACAGGTCGGAGCACC-ACCGGAG 453
Query 289 ATAGCGTGTATATTGGAAGAGATTCAGCAAGAGAACCATGTGTACAAG-AGAGATGTTGC 347
||||||||| || | || |||||||| | |||| |||| || ||| | ||| ||||
Sbjct 454 ATAGCGTGTTTACTAGAGGAGATTCAACGGGAGAGTGATGTTTATAAGCA-AGAGGTTGT 512
Query 348 TCCATT-ATCTTGCTTTGGAGATGATCCTGAGCTTGACGAATTCATGGAAACCTACTGTG 406
||| || ||||||||||||| ||||||||||||||| ||||| |||||||| ||||| |
Sbjct 513 TCC-TTCTTCTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTTATGGAAACGTACTGCG 571
Query 407 ATATTTTGGTTAAATACAAAGCCGATCTTGCGAGGCCGTTCGACGAGGCTGCAACTTTCA 466
|||| || || ||||||||| | ||||| || || ||||| |||||||| | ||||
Sbjct 572 ATATATTAGTGAAATACAAATCGGATCTAGCAAGACCGTTTGACGAGGCAACGTGTTTCT 631
Query 467 TAAACAAGATCGAAATGCAACTTCAGAACCTGTGCACTGGT-CCAGCGTCTGCTACAGCT 525
| |||||||| || ||||| || | |||||| || |||||| | | |||||| | |
Sbjct 632 TGAACAAGATTGAGATGCAGCTACGGAACCTATGTACTGGTGTC-GAGTCTGCCAGGGGA 690
Query 526 CTTTCAGATGATGGCGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATCACGTA-AC 584
|||| || ||||| | | |||||||||||||||||||| | || |||||| | |
Sbjct 691 GTTTCTGAGGATGGTGTAATATCATCTGACGAGGAACTGAGTGGAGGTGATCATG-AGGT 749
Query 585 AGC-GCAGGACAGCCA-ACAACGAAG-CAATGACCGGGATCTGAAGGACCA-GCTACTAC 640
||| | |||| | | |||| || | || |||||||| || || || | | | ||||
Sbjct 750 AGCAG-AGGA-TGGGAGACAAAGATGTGAA-GACCGGGACCTCAAAGA-TAGGTTGCTAC 805
Query 641 GTAAATTCGGTAGCCATATCAGTTCATTGAAGCTCGAGTTCTCTaagaagaagaagaaag 700
| ||||| || |||| ||| ||| | || ||||| |||||||| ||||||||||||||||
Sbjct 806 GCAAATTTGGAAGCCGTATTAGTACTTTAAAGCTTGAGTTCTCAAAGAAGAAGAAGAAAG 865
Query 701 ggaagttaccaagagaagcaagacaagC-GTTGTTCGATTGGTGGAATGTTCATTATAAA 759
| |||||||||||||||||||||||||| || || |||||||||||| | ||||||||
Sbjct 866 GAAAGTTACCAAGAGAAGCAAGACAAGCTCTTCTT-GATTGGTGGAATCTCCATTATAAG 924
Query 760 TGGCCTTACCCCACTGAAGGTGACAAAATAGC-TCTGGCTGGA-GAAACAGGATTGA-AT 816
||||||||||| |||||||| || || ||||| | | ||| || | ||| || || | |
Sbjct 925 TGGCCTTACCCTACTGAAGGAGATAAGATAGCAT-TAGCT-GATGCAACGGGGTT-AGAC 981
Query 817 CAAAAGCAAATCAACAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAG 876
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 982 CAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGTCATTGGAAGCCATCAGAG 1041
Query 877 AACATGCCGTTCGATATGATGGATGATTCTAATGAAACATTCTTAACCGAGGAATGAA 934
|| ||||| |||| ||||||||||||||||| || | ||||||| |||||||||||||
Sbjct 1042 AATATGCCTTTCGCTATGATGGATGATTCTAGTGGATCATTCTTTACCGAGGAATGAA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5