BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476179
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70540.1 | Symbols: EDA24 | Plant invertase/pectin methylest... 974 0.0
> AT1G70540.1 | Symbols: EDA24 | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:26593930-26594670
FORWARD LENGTH=741
Length=741
Score = 974 bits (527), Expect = 0.0
Identities = 623/669 (93%), Gaps = 7/669 (1%)
Strand=Plus/Plus
Query 1 ATAAAAATGTCTACTAATCTCCACCTTGCGACCGCGGTGGTCCTCCTCCTCCTGACCGCG 60
|||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 38 ATAAAAATGTCTACAAATCTCCACCTTGCCACCGCGGTGATCCTCCTCCTCCTGACCGCG 97
Query 61 AGCCAAAGCGGTGTAGCAATGGCTCAGCGGGTTATGGGAGGCGGGCGCGATCCATGCTCC 120
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 98 AGCCAAAGCGGTGTAGCAATGGCTCAGAGGGTTATGGGAGGCGGACGCGATCCATGCTCC 157
Query 121 GTGTCAGATTTCAAGGTGTTGTGCAGATCCGTGGTGAAGGGCCAAAAGAATGTTAACGCA 180
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 158 GTGTCAGATTTCAAAGTGTTGTGCAGATCAGTGGTTAAGGGCCAAAAGAATGTTAACGCA 217
Query 181 GCGACAGAGGTATCCATACGAGAGCTGATGAAAAGAACGATCAAGGCCAAAGAAGCTGCC 240
||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 218 GCGACGGAGGTTTCCATAAGAGAGCTGATGAAAAGAACGATCAAGGCCAAAGAAGCCGCC 277
Query 241 AAGATTAGCCGGAAAAGCGGTGGAGGACTCAAAACTTGCTACTCAAACTATGACAGTGCG 300
||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||
Sbjct 278 AAGATTAGCCGGAAAAGTGGAGGAGGGCTCAAAACTTGCTACTCAAACTATGATAGTGCA 337
Query 301 CTCGAAAATCTACAAAAGGCGTTAAAAAACATTAAACAAAATGATGGATTTAGTCTTAAC 360
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 338 CTCGAAAATCTACAAAAGGCGTTGAAAAACATCAAACAAAATGATGGGTTTAGTCTTAAC 397
Query 361 ATCAATCTTAGTGCCTCCTTAACGGACTTTGATACGTGCAATGACGCCATGGGTGGTGGT 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 398 ATCAATCTTAGTGCCTCCTTGACGGACTTTGATACGTGCAATGACGCCATGGGTGGTGGT 457
Query 421 AAGGCTTCGAATGTCTTCGCCAAATCCACAAGTACGTTGCACGAAATGGCTGATAATTGT 480
| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 458 ACGGCTTCGAATGTCTTCGCCAAATCCACAAGCACGTTGCATGAAATGGCTGATAATTGC 517
Query 481 TTGGCTCTCTCTACCCTCGTCAAACAATAATGATAAAGCCAGATGTGAATGTTTTAATTT 540
||||||||||||||||| |||||||||| ||||| |||||| |||||||| ||||||||
Sbjct 518 TTGGCTCTCTCTACCCTTGTCAAACAATGATGATGAAGCCAAATGTGAATATTTTAATTC 577
Query 541 GAACAAGaaaacaaacaaa-aaaagaatgaaaaaaTGTTTGAATTTACAGTAGAtttttt 599
|||||||| |||||| || |||| ||||||||||||||||| ||||| ||||| || ||
Sbjct 578 GAACAAGATAACAAA-AAGGAAAATAATGAAAAAATGTTTGAGTTTACGGTAGAATTGTT 636
Query 600 tttttccctttttttGACTCTTGTGTACAGTTTCGGAATGTTTTGAACATTGTGTGATTA 659
|| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 637 TT---C--TTTTTTTGACTCTTGTGTATAGTTTCGGAATGTTTTGAACATTGTGTGATTA 691
Query 660 AGAGGGTTT 668
|||||||||
Sbjct 692 AGAGGGTTT 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32300556521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5