BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476182
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70560.1 | Symbols: WEI8, TAA1, SAV3 | tryptophan aminotrans... 2182 0.0
AT1G23320.1 | Symbols: TAR1 | tryptophan aminotransferase relat... 540 2e-152
> AT1G70560.1 | Symbols: WEI8, TAA1, SAV3 | tryptophan aminotransferase
of Arabidopsis 1 | chr1:26604855-26607503 FORWARD LENGTH=1399
Length=1399
Score = 2182 bits (1181), Expect = 0.0
Identities = 1338/1411 (95%), Gaps = 22/1411 (2%)
Strand=Plus/Plus
Query 1 ATTAAACACTATACAAACGACCAAACCAAGAAGAAGAAGATGGTGAAATTGGAGAACCCG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1 ATTAAACACTATACAAACGACCAAACCAAGAAGAAGAAGATGGTGAAACTGGAGAACTCG 60
Query 61 AAGAAACCCGAAAACGTTTCGAACAAGAACATCCCCTTGTCCGATTTCGTCGTCAATTTG 120
| |||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 61 AGGAAACCCGAAAAAATTTCGAACAAGAACATCCCCATGTCCGATTTCGTGGTCAATCTG 120
Query 121 GATCATGGTGATCCAACGGCGTACGAGGAATACTGGAGGAAGATGGGTGACAGGTGTACG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GATCATGGTGATCCAACGGCGTACGAAGAATACTGGAGGAAGATGGGTGACAGGTGTACG 180
Query 181 GTGACGATACGTGGTTGTGATCTTATGAGTTACTTCAGCGACTTGACGAACTTGTGTTGG 240
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 181 GTGACGATACGTGGTTGTGATCTCATGAGTTACTTCAGCGACATGACGAACTTGTGTTGG 240
Query 241 TTCCTTGAGCCAGAGCTTGAAGATGCGATCAAGGACTTGCACGGTGCGGTAGGAAACGCT 300
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 241 TTCCTTGAGCCAGAGCTTGAAGATGCGATCAAGGACTTGCACGGTGTTGTTGGTAACGCT 300
Query 301 GCGACGGAAGACCGATACATCGTGGTCGGGACCGGCTCGACGCAGCTTTGTCAAGCGGCC 360
|||||||| || || ||||| ||||| |||||||| |||||||||||||||||||| |||
Sbjct 301 GCGACGGAGGATCGGTACATAGTGGTTGGGACCGGTTCGACGCAGCTTTGTCAAGCCGCC 360
Query 361 GTCCACGCACTATCTTCACTAGCCAGGACTCAACCTGTCAGCGTCGTCGCCGCCGCTCCT 420
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GTCCACGCACTCTCTTCACTAGCCAGGAGTCAACCTGTCAGCGTCGTCGCCGCCGCTCCT 420
Query 421 TTTTATTCCACATATGTGGAGGAGACGACATATGTTCGGTCGGGTATGTACAAGTGGGAA 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTTACTCCACATATGTGGAGGAGACGACATATGTTCGGTCGGGTATGTACAAGTGGGAA 480
Query 481 GGAGACGCATGGGGTTTCGACAAAAAGGGTCCGTACATCGAGCTAGTGACGTCACCTAAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGAGACGCATGGGGTTTCGACAAAAAGGGTCCGTACATCGAGCTAGTGACGTCACCTAAT 540
Query 541 AACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCAGACGACGACGAAGCCAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCAGACGACGACGAAGCCAAA 600
Query 601 GTGATCCATGACTTTGCCTACTACTGGCCCCACTACACTCCCATCACTCGCCGTCAAGAT 660
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGATCCATGACTTTGCTTATTACTGGCCCCACTACACTCCCATCACTCGCCGTCAAGAC 660
Query 661 CATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCACGCTGGGTCCCGTATCGGG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 CATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCACGCTGGGTCCCGTATTGGG 720
Query 721 TGGGCATTGGTGAAGGACAAGGAGGTAGCTAAGAAGATGGTTGAGTATATAATTGTGAAC 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TGGGCATTGGTGAAGGACAAGGAGGTAGCTAAGAAGATGGTTGAGTATATTATTGTGAAC 780
Query 781 TCCATTGGTGTATCTAAGGAGTCACAAGTTCGAACCGCTAAGATACTCAAAGTTCTTAAG 840
|| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 781 TCGATTGGTGTGTCTAAGGAGTCACAGGTTCGAACAGCTAAGATACTCAACGTTCTAAAG 840
Query 841 GAGACTTGTAATAGTGAGTCCGACGAGTCTGAGAATTTCTTCAAGTATGGTCGTAAAATG 900
||||||||||| || |||||||| | ||||||||||||||||||||||||||| | |||
Sbjct 841 GAGACTTGTAAGAGCGAGTCCGA-G--TCTGAGAATTTCTTCAAGTATGGTCGTGAGATG 897
Query 901 ATGAAGAATCGATGGGAGAAGCTACGTGAAGTGGTGAAAGAGAGCGATGCTTTCACTCTT 960
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 ATGAAGAATCGGTGGGAGAAGCTACGTGAAGTTGTGAAAGAGAGCGATGCTTTCACTCTT 957
Query 961 CCCAAGTACCCTGAAGCATTTTGCAACTACTTTGGAAAATCACTCGAATCTTACCCTGCG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCCAAGTACCCTGAAGCATTTTGCAACTACTTTGGAAAATCACTCGAATCTTACCCTGCG 1017
Query 1021 TTTGCGTGGCTAGGGACGAAGGAAGAGACGGATCTGGTTAGTGAATTGAGGAGACACAAG 1080
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 TTTGCGTGGCTAGGGACGAAGGAAGAGACGGATCTGGTAAGTGAATTGAGGAGACACAAG 1077
Query 1081 GTAATGTGCAGAGCTGGAGAACGTTGTGGATCTGACAAGAAGCATGTCCGAGTCAGCATG 1140
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTAATGAGCAGAGCTGGAGAGCGTTGTGGATCTGACAAGAAGCATGTCCGAGTCAGCATG 1137
Query 1141 CTTAGTCGTGAAGACGTTTTCAATGTCTTTCTCGAGAGACTCGCCAACATGAAGCTCATT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTTAGTCGTGAAGACGTTTTCAATGTCTTTCTCGAGAGACTCGCCAACATGAAGCTCATT 1197
Query 1201 AAAAGCATTGACCTTTAGATAA---------TATAAGCGCATATAACGCCTTATA-ACTA 1250
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 1198 AAAAGCATTGACCTTTAGATAAGCAAGCGAATATAA-CGCATATAACGCCTTATATA-TA 1255
Query 1251 AGAAGACTTTTTAGTTTTTAGCTTACCCTAAAGTTATCTGACTATAAATAAATATGTAGA 1310
| ||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct 1256 A-AAGACTTTTTAGTTTTTAGCTTACCCTAAAGTTATCT-A-TATA--TAAGTATGTAGA 1310
Query 1311 ACCAAAGAAGTAGAACTtctctctctctctATGTTTATGGCCTTTTGGCCCTATGTGAAA 1370
|| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 ACTAAAGAGGTAGAAC--CTCTCTCTCTCTATGTTTATGGCCTTTTGGCCCTATGTGAAA 1368
Query 1371 TATAAAGATGAAACTGTTCTAGTTCTTTGAT 1401
||| ||| ||||||||||||||||||| |||
Sbjct 1369 TATGAAGGTGAAACTGTTCTAGTTCTTAGAT 1399
> AT1G23320.1 | Symbols: TAR1 | tryptophan aminotransferase related
1 | chr1:8273423-8275350 REVERSE LENGTH=1167
Length=1167
Score = 540 bits (292), Expect = 2e-152
Identities = 894/1174 (76%), Gaps = 83/1174 (7%)
Strand=Plus/Plus
Query 55 AACCCGAAGAAACCCGAAAACGTTTCGAAC-AAGAACATCCCCTTGTCCGATTTCGTCGT 113
||| |||||||| | || | | ||||||| ||| ||| |||||||||| | || |
Sbjct 19 AACTCGAAGAAATCAGACAGTGGTTCGAACGAAG-ACAAGAGCTTGTCCGATGACATCAT 77
Query 114 CAAT-TTGGATCATGGTGATCCAACGGCG-TACGAGGAATACTGGAGGAAG-ATGGGTGA 170
|||| || ||||| || ||||| |||||| | | | || || |||| |||| | | ||
Sbjct 78 CAATCTT-GATCAAGGAGATCCTACGGCGTTTC-AAGAGTATTGGATGAAGAAAAAG-GA 134
Query 171 CAGGTGTACGGTGACGATACGTGGTTGTGATCTTATGAGTTACTTCAGCGACTTGACGAA 230
||||||||||||| ||||| | || ||||| |||||||||||||||||| || |||
Sbjct 135 CAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAGCGACACGAAGAA 194
Query 231 CTTGTGTTGGTTCCTTGAGCCAGAGCTTGAAG-ATGCGATCAAGGAC-TTGCACGGTGCG 288
| ||||||||||||| ||||||||||||| || | |||||||||| | ||||| |||||
Sbjct 195 CGTGTGTTGGTTCCTAGAGCCAGAGCTTG-AGAAGGCGATCAAGG-CGTTGCATGGTGCA 252
Query 289 GTAGGAAACGCTGCGACGGAAGACCGATACATCGTGGTCGGGACCGGCTCGACGCAGCTT 348
| || ||||| ||||| || || || ||||||||||| ||||| ||||| | ||||||
Sbjct 253 ATCGGTAACGCAGCGACCGAGGAACGCTACATCGTGGTGGGGACTGGCTCTTCACAGCTT 312
Query 349 TGTCAAGCGGCCGTCCACGCACTATCTTCACTAGC-CAGGACTC-AACCTGTCAGCGTCG 406
||||| || || | ||||| || || || | ||| || ||||||||||| |||
Sbjct 313 TGTCAGGCCGCTTTGTTTGCACTTTCATCGCTCTCTGAGG--TCAAACCTGTCAGCATCG 370
Query 407 TCGCCGCCGCTCCTTTTTATTCCACATATGTGGAGGAGACGA-CATATGTTCGGTCG--G 463
|||| || | ||||| ||| |||||||| ||||||||| | | | ||| ||| ||| |
Sbjct 371 TCGCAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGC-ATCGTATCTTCAATCGACG 429
Query 464 GTATGTACAAGTGGGAAGGAGACGCATGG-GGTTTCGACAAAAAGGGTCCGTACATCGAG 522
|| ||||| ||||||||||||||| || | |||||||||||||| ||||||||||||
Sbjct 430 CTA--TACAAATGGGAAGGAGACGCAAGGACG-TTCGACAAAAAGGGACCGTACATCGAG 486
Query 523 CTAGTGACGTCACCTAATAACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCA 582
| ||||||||||| || |||||||| || | ||| |||||| |||||||||| ||| |
Sbjct 487 TTGGTGACGTCACCGAACAACCCTGATGGGATCATGAGAGAGCCGGTGGTGAATCGT--A 544
Query 583 GACGACGACGAAGCCAAAGTGATCCATGACTTTGCCTACTACTGGCCCCACTACACTCCC 642
| | || | | ||||||||||| ||||| || || |||||||| ||||||||||||
Sbjct 545 G--G--GAGGGTGGGAAAGTGATCCACGACTTGGCGTATTACTGGCCACACTACACTCCC 600
Query 643 ATCACTCGCCGTCAAGATCATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCAC 702
||||||||||||||||| |||||| | ||||||||||| |||||||| ||||| ||||||
Sbjct 601 ATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACCGGCCAC 660
Query 703 GCTGGGTCCCGTATCGGGTGGGCATTGGTGAAGGACA-AGGAGGTAGCTAAGAAGATGGT 761
|||||||| || || |||||||| || |||||||||| || |||| ||||||||||||||
Sbjct 661 GCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAG-AGGTGGCTAAGAAGATGGT 719
Query 762 TG-AGTA-TATAATTGTGAACTCCATTGGTGTATCTAAGGAGTCACAAGTTCGAACCGCT 819
| | || | ||| | |||||||||||||| || |||||||||||| |||| || |
Sbjct 720 -GCACTACT-TAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCACC 777
Query 820 A-AGATACTCAAA-GTTCTTA-AGGAGACTTGTAATAGTGAGTCCGACGAGTCTGAGAAT 876
| | || || ||| | || | | | || |||| | || | || | || ||||
Sbjct 778 ACA-ATTCT-AAACGAACTGACAAAA-ACATGTA---G-GA--C--ACAA-TCGGAGAGC 825
Query 877 TTCTTCAAGTATGG-T-CGTAAAATGATGAAGA-ATCGATGGGAGAAGCTACGTGAAGTG 933
|||||| ||||||| | || | || ||||||| | || ||||||| ||||||||| ||
Sbjct 826 TTCTTCGAGTATGGCTACG-AGAA-GATGAAGTCA-CGGTGGGAGAGGCTACGTGAGGTA 882
Query 934 GT-GAAAGAGAGCGATGCTTTCACTCTTCCC-AAGTACCCTGAAGCATTT-TGCAACTAC 990
|| ||| | | || || |||||||| ||| || |||||| ||| | || ||||||| |
Sbjct 883 GTCGAATCCG-GTGACGCATTCACTCT-CCCTAATTACCCTCAAG-ACTTCTGCAACTTC 939
Query 991 TTTGG-AAAATCA-CTCGAATCTTAC-CCTGCGTTTGCGTGGCTAGGG-ACGAAG-G-AA 1044
||||| |||| | ||| | ||| | ||||||||||||||| | ||| | ||| | ||
Sbjct 940 TTTGGCAAAACCCTCTCCA--CTT-CTCCTGCGTTTGCGTGGTTGGGGTATAAAGAGGAA 996
Query 1045 GAGACGGATCT-GGTTAGTGAATTGA-GGAGACACAAGGTAATGT-GCAGAGCTGGAGAA 1101
||| | |||| || ||| |||| ||||| | ||||| || | |||| |||||
Sbjct 997 -AGA-G-ATCTCGGA-AGTCTCTTGAAGGAGA-AGAAGGTTTTGACG-AGAGGAGGAGAC 1050
Query 1102 CGTTGTGGATCTGACAAGAAGCATGTCCGAGTCAGCATGCTTAGTCGTGAAGACGT-TTT 1160
|| ||||| | | |||||| | | ||||| |||||||||||||| || || || | |||
Sbjct 1051 CGATGTGGTTGTAACAAGAGGTACGTCCGTGTCAGCATGCTTAGCCGCGACGATGACTTT 1110
Query 1161 CAATGTCTTTCTCGAGAGACTCGCCAACATGAAG 1194
| |||| |||| | |||||||| | ||| |||
Sbjct 1111 GAC-GTCTCTCTCCAAAGACTCGCTACCATCAAG 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5