BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476184
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31220.1 | Symbols: | Formyl transferase | chr1:11156802-11... 1788 0.0
> AT1G31220.1 | Symbols: | Formyl transferase | chr1:11156802-11158683
FORWARD LENGTH=1416
Length=1416
Score = 1788 bits (968), Expect = 0.0
Identities = 1123/1198 (94%), Gaps = 9/1198 (1%)
Strand=Plus/Plus
Query 6 CACTTATTCCGACAAAAACCTCCGATTAGACCGTCGGAATGGAATCACGGGTTTTGTTCT 65
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 225 CACTTATTCCGACAAAACCCTCTGATTAGACCGTCGGAATGGAATCACGGGTTTTGTTCT 284
Query 66 CGAGTCAATTCAACTTCCCGGTGAATTCACCGTTGAAGAACCGTGAAACCTCGATTGCTC 125
| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 285 CTAGTCAATTCAACTTCCCGGTGAATTCACCGTTTAAGACCCGTGAAACCTCGATTGCTC 344
Query 126 CGTTCACACCTCCCCGGAATGTTCTCTCCTTGTCTTTCCGAAGTCCCGCAGACAGATTTG 185
|| |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||| ||
Sbjct 345 CGCTCACACCTTCCCGGAATGTTCTCTCCTTCTCTTTCCGTAGTCCCGCAGAGAGATGTG 404
Query 186 CGGTGAGGATCGGACCGCGACCGTTTGTAAAAGCTGTTTCGTTTGCTCCAAAGATAGTAG 245
|| ||||||| | | | || | |||||||||||| ||||| | ||||| |||||||||
Sbjct 405 CGATGAGGATTGTA-C-CG--C--TTGTAAAAGCTGCTTCGTCTACTCCACAGATAGTAG 458
Query 246 CGGAGGTCGATGATGGTTCGAGAGACGAACCAAGAAGGAAGAAGCTTGCTGTGTTTGTGT 305
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 459 CGGAGGTC---GATGGTTCGTCTCACGAACCAAGAAGGAAGAAGCTTGCTGTGTTTGTGT 515
Query 306 CGGGAGGTGGTTCGAATTTCAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATG 365
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CGGGAGGTGGTTCAAATTTCAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATG 575
Query 366 GGGATGTTGTTTTGTTGGTCACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAA 425
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GTGATGTTGTTTTGTTGGTCACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAA 635
Query 426 GTAACGGCATTCCTGTTTTAGTATTCCCAAAAGCGAAACGAGAATCATCCGATGGACTCT 485
|||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 636 GTAATGGAATTCCTGTTTTAGTATTCCCAAAAGCGAAACGAGAACCATCTGATGGACTCT 695
Query 486 CTCCTTCAGAGCTTGTAGATGTACTTAGAAAATATGGTGTAGAATTTGTTCTTTTAGCTG 545
|||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 696 CTCCTTCAGAACTTGTAGATGTACTAAGGAAATATGGTGTAGACTTTGTTCTTTTAGCTG 755
Query 546 GATATTTGAAACTTATACCGGTCGAGCTGGTTCAAGCATTTCCTAAACGGATTCTAAATA 605
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 756 GATATTTGAAACTTATACCGGTCGAGCTGGTCCAAGCTTTTCCTAAACGGATTCTAAATA 815
Query 606 TTCATCCTGCTCTTCTTCCGGCTTTCGGAGGCAAAGGTCTTTATGGTATAAGAGTGCATA 665
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 816 TTCATCCTGCTCTTCTTCCGGCTTTCGGAGGCAAAGGTCTTTATGGTATAAAAGTGCATA 875
Query 666 AAGCTGTTCTAGAATCGGGAGCTAGATATTCAGGTCCGACAATTCACTTTGTCGATGAGG 725
||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 876 AAGCTGTTCTAGAATCGGGAGCTAGATATTCGGGTCCGACAATTCACTTCGTCAATGAGG 935
Query 726 AGTACGACACAGGGCGGATACTTGCTCAAAGTGCAGTCCGAGTGATTGCTAATGATACAC 785
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 936 AGTACGATACAGGTCGGATACTTGCTCAAAGTGCAGTCCGTGTGATTGCTAATGATACAC 995
Query 786 CAGAGGAGTTGGCCAAAAGAGTTCTTCATGAGGAACACAAACTCTATGTCGAAGTGGTGG 845
|||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 996 CAGAAGAATTGGCCAAAAGGGTTCTTCATGAGGAACACAAACTGTATGTCGAGGTGGTGG 1055
Query 846 CTGCGATTTGCGAAGAGCGGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAGAGCA 905
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1056 GTGCGATTTGCGAAGAGCGGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAAAACA 1115
Query 906 AAGAAAACCCTGACGAGTACTATTAGATCCTCAACAAATGAAGTTACTCATTGGATGTCA 965
|| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1116 AACAAAACCCTGACGAGTACTATTAGATTCTCAACAAATGAAGTTATTCATTGGATGTTA 1175
Query 966 GATTAGTCACATTTTCAAATCAAAGTGTTTCAGCCTAGGTTATGTAGAAGAAGTTTTCTT 1025
||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||
Sbjct 1176 GATTAGTCACATTTTCAAAACAAAGTGTTTCAACATAGGTTATGTAGAAGAAGTTTTTTT 1235
Query 1026 GCCCAAAGTATAGATTGAGAAATGTTTCTGATGCTAAATTTTGTTTCGATTGGGTCAGAA 1085
|||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 1236 GCCCGAAGTATAGATTGAGACATGTTTCTGATACTAAATTTTGTTTCGGTTGGGTCAGAA 1295
Query 1086 TCAAATGGAAGGAGATGAAATTCGAGCCAGGAGACAGCATTTTAATGCTTGTGTTGTATA 1145
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1296 TCATATGGAAGGAGATGAAATTCGAGTCAGGAGACAGCATTTTAATGCTTGTGTTGTATA 1355
Query 1146 ATACCAACAGCCTTTATTCAATTTTTTCCTAGAGTGTTTTATTACCATGAAGTTTGGT 1203
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1356 ATACCAACAGTCTTTATTCAATTTTTTCCTAGAATGTTTTATTACCTTGAAGTTTGGT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5