BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476189
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70590.1 | Symbols: | F-box family protein | chr1:26618321-... 1659 0.0
> AT1G70590.1 | Symbols: | F-box family protein | chr1:26618321-26620388
FORWARD LENGTH=1367
Length=1367
Score = 1659 bits (898), Expect = 0.0
Identities = 1137/1246 (91%), Gaps = 41/1246 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaaGCGAATCATTTACTTACCTCTCTTTGAAACCGACGGTGGTCTTTT 60
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 11 AAAAAAAAAAAAAAAGCGAATCGTTTACTTACCCCTCTTTGAAACCGACGGTGGTATTTT 70
Query 61 TCGCCGGAGAAGATGAAGCAGAGAACGTGGCCTTGTAGATCTGAAGGATCTCGATTCACC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 71 TCGCCGGAGAAGATGAAGCAGAGAACCTGGCCTTGTAGATCTGAAGGATCTCGATTCTCC 130
Query 121 TCCTTATCGTTTTTGAAACCTCAAGAAAAGGAAAAACGCAGTAGAATTTCTTCAATCAAC 180
||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct 131 TCCTTATCGTTTTTGAAACCTCACGACAAGGATAAACGGAGTAGAATTTCATCAATCAAC 190
Query 181 AGAGCAACGGCGAAGTCAAGTACAAGCTCAAGGTCTTCTTC-T--TCTTCATC-TC-C-T 234
| ||||||||||||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct 191 AAAGCAACGGCGAAGTCAACCACAAGTTCAAGGTCTTCTTCTTCCTCTTCTTCTTCACGT 250
Query 235 -CT--ATCGAATGAGGTCAGTGGAGATTTCTCGATGCTTCCGTTTGATATACTGATGAAG 291
|| |||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 251 CCTCCATCGAATGAGTTC---GGAGATTTCTCGATGCTTCCGTATGATATACTGATGAAG 307
Query 292 ATCGCTGCACCGTTTAGTCATCCGAATCTTCAAGCGGCGTCGTCGGTATGTAAATCGTGG 351
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 308 ATTGCTGCACCGTTTAGTCATCCGAATCTTCAAGCGGCGTCTTTGGTATGTAAATCGTGG 367
Query 352 AGAGACGCGCTAAAGCCGTTGAGAGAGTCGATGTTGTTGCTTCGTTGGGGGAAAAAGTTC 411
||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |
Sbjct 368 AGAGACGCGCTAAAGCCGTTGCGAGAGTCGATGTTGTTGATTCGGTGGGGGAAAAAGTAC 427
Query 412 AAACACGGAAGAGGAGGTGTGCGAGCGAATCTCGATAAGGCTCTTGATTCGTTTCTGAAA 471
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 428 AAGCACGGAAGAGGAGGTGTGCGAGCGAATCTCGACAAAGCTCTTGATTCGTTTCTGAAA 487
Query 472 GGAGCTGCGCGTGGATCCACGCTCGCTATGGTCGACGCTGGGCTTGTGTATTGGGAAACG 531
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 488 GGAGCTATGCGTGGATCCACGCTCGCTATGGTCGACGCTGGGCTTGTGTATTGGGAAA-G 546
Query 532 -GGAGAGAAGGAGAAAGCGGTGAGTTTGTATCGGAGAGCTGCAGAGCTTGGTGATGCTGT 590
|||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 547 AGGAGAGAAGGAGAAAGCGGTGAATTTGTATCGGAGAGCTTCGGAGCTTGGTGATGCTGT 606
Query 591 TGGTCAATGTAATTTAGGGATTTG-TTATCTTCAAGTTCAACCTTCAAATCCGAAGGAGG 649
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
Sbjct 607 TGGTCAATGTAATTTAGGGA-TTGCTTATCTTCAAGTTCAACCTTCAAATCCCAAGGAAG 665
Query 650 CGATGAAATGGTTGCAACAATCTGCAGAGAATGGTTACGTTCGAGCACAGTATCAGTTAG 709
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 666 CGATGAAATGGTTGAAACAATCTGCAGAGAATGGTTATGTTCGAGCACAGTATCAGTTAG 725
Query 710 CTCTTTGTTTACATCAAGGCCGGGTCGTGAAAACCAATCTGCTAGAAGCTAGTAAATGGT 769
||||||||||||| || || ||||||||| ||||||||||||| ||||||| ||||||||
Sbjct 726 CTCTTTGTTTACACCATGGTCGGGTCGTGCAAACCAATCTGCTTGAAGCTACTAAATGGT 785
Query 770 ACCTAAAGGCAGCAGAAGGTGGGTATGTACGAGCGATGTATAACATTTCGCTTTGTTATT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 ACCTAAAGGCAGCAGAAGGTGGGTATGTACGAGCGATGTATAACATTTCGCTTTGTTATT 845
Query 830 CGGTTGGAGAAGGCTTACCACAAAACCGCAAGCTAGCAAGAAAATGGATGAAACGAGCAG 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 CGGTTGGAGAAGGCTTACCACAAAACCGCAAGCTAGCAAGAAAATGGATGAAACGAGCAG 905
Query 890 CTGATCACGGCCACTCTAAAGCTCAGTTTGAACACGGCCTTGCTCTATTTTCTGAAGGGG 949
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 CTGATCACGGCCACAGTAAAGCTCAGTTTGAACACGGCCTTGCTCTATTTTCTGAAGGGG 965
Query 950 CGATGCTGAAATCTGTACTTTACTTAGAACTCGCTGAACGTGGTGGCGAATCAGCTGCTA 1009
||||||||| || || |||||||||||||| || ||||||||||||||| |||||||||
Sbjct 966 AGATGCTGAAGTCAGTGCTTTACTTAGAACTTGCCGAACGTGGTGGCGAAGCAGCTGCTA 1025
Query 1010 CTCACATCAAGGAAGTTATACACCAACAGCTTTCTGCAACTTCTCGTGGTCATG---T-C 1065
||| | |||| |||||| |||||||||||||||||||||||| | ||||||| | | |
Sbjct 1026 CTCCCGTCAAAGAAGTTGTACACCAACAGCTTTCTGCAACTTTTGGTGGTCAGGCCGTAC 1085
Query 1066 A---T---A--CACCAAGCCAATAACTGGTGTCCTCTACCAGCTACTCGCTGACTCCT-T 1116
| | | |||||||||||||||||| |||||||||||| |||||| |||||||| |
Sbjct 1086 ACCATGCCATACACCAAGCCAATAACTGGCGTCCTCTACCAGTTACTCGATGACTCCTAT 1145
Query 1117 -A-------CAGTGAGGTCAAAGTGATTGGCTCGTTACATGTCCATAACTTATATTCCAA 1168
| |||||||||| | |||||||||| ||||||||||||||||||| |||||||
Sbjct 1146 CATTTATTTCAGTGAGGTCTA-GTGATTGGCTAGTTACATGTCCATAACTTAAATTCCAA 1204
Query 1169 TTTGGCCATGTTTTCAATGACAA--CCTTATTTCAGATTTCGACTT 1212
|||| | |||| | ||||||||| |||||||||||||||| ||||
Sbjct 1205 TTTGACAATGTAT-CAATGACAAAACCTTATTTCAGATTTCTACTT 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5