BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476190
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70600.1 | Symbols: | Ribosomal protein L18e/L15 superfamil... 828 0.0
AT1G23290.1 | Symbols: RPL27A, RPL27AB | Ribosomal protein L18e... 636 0.0
> AT1G70600.1 | Symbols: | Ribosomal protein L18e/L15 superfamily
protein | chr1:26620923-26621659 REVERSE LENGTH=737
Length=737
Score = 828 bits (448), Expect = 0.0
Identities = 518/549 (94%), Gaps = 16/549 (3%)
Strand=Plus/Plus
Query 1 GGAGAAGAGTGTAGCAGATCGGCGAAAATGACAACCAGATTCAAGAAGAACAGGAAGAAG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 GGAGGAGAGTGTAGCAGATCGGCGAAAATGACAACCAGATTCAAGAAGAACAGGAAGAAG 84
Query 61 AGAGGTCACGTCAGCGCCGGACATGGTCGTATCGGAAAGCACCGTAAGCATCCCGGAGGT 120
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 85 AGAGGTCACGTCAGCGCCGGACATGGGCGTATCGGTAAGCACCGTAAGCATCCCGGAGGT 144
Query 121 CGTGGTAACGCCGGAGGTATGCATCACCACAGGATCCTCTTCGACAAGTACCATCCAGGT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 CGTGGTAACGCTGGAGGTATGCATCACCACAGGATCCTCTTCGACAAGTACCATCCAGGT 204
Query 181 TACTTTGGTAAAGTTGGTATGAGGTATTTCCACAAGCTGAGGAACAAGTTCTTCTGCCCA 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 TACTTCGGTAAAGTTGGTATGAGGTATTTCCACAAGCTGAGGAACAAGTTCTTCTGCCCA 264
Query 241 ATCGTTAACCTCGACAAGCTTTGGTCACTCGTCCCTGAAGATGTGAAGGCGAAATCAACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 ATCGTTAACCTCGACAAGCTTTGGTCACTCGTCCCTGAAGATGTGAAGGCGAAATCAACC 324
Query 301 AAGGATAATGTTCCTTTGATCGATGTGACGCAACATGGTTTCTTCAAGGTTTTGGGGAAA 360
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 325 AAGGACAATGTTCCGTTGATCGATGTGACTCAACATGGTTTCTTCAAGGTTTTGGGTAAA 384
Query 361 GGTCATTTGCCTGAGAACAAGCCGTTCGTTGTGAAGGCGAAGCTTATCTCGAAGACTGCT 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 385 GGTCATTTGCCTGAGAACAAGCCGTTCGTTGTGAAGGCGAAGCTTATTTCGAAGACTGCT 444
Query 421 GAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTGCTCACTGCCTAAGTTAGGTGAAtt 480
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 445 GAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTGCTTACTGCTTAAGTTAGGTGAATT 504
Query 481 t-t------a--t-t-t----gaatcttctctggagttttgttatctttttgttgtcttt 525
| | | | | | ||||||||| ||||||||| | ||||||| |||||||||
Sbjct 505 TATTTGCTTAACTCTGTTTTTGAATCTTCTATGGAGTTTTATCATCTTTT-GTTGTCTTT 563
Query 526 tggattttg 534
|||||||||
Sbjct 564 TGGATTTTG 572
> AT1G23290.1 | Symbols: RPL27A, RPL27AB | Ribosomal protein L18e/L15
superfamily protein | chr1:8262984-8263587 FORWARD LENGTH=604
Length=604
Score = 636 bits (344), Expect = 0.0
Identities = 401/429 (93%), Gaps = 1/429 (0%)
Strand=Plus/Plus
Query 43 AAGAAGAACAGGAAGAAGAGAGGTCACGTCAGCGCCGGACATGGTCGTATCGGAAAGCAC 102
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 39 AAGAAGAACAGAAAGAAGAGAGGTCACGTCAGCGCCGGACATGGACGTATCGGTAAGCAC 98
Query 103 CGTAAGCATCCCGGAGGTCGTGGTAACGCCGGAGGTATGCATCACCACAGGATCCTCTTC 162
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 99 CGTAAGCATCCCGGAGGTCGTGGAAACGCAGGAGGTATGCATCACCACAGGATCCTCTTC 158
Query 163 GACAAGTACCATCCAGGTTACTTTGGTAAAGTTGGTATGAGGTATTTCCACAAGCTGAGG 222
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 159 GACAAGTACCATCCAGGTTACTTCGGGAAAGTTGGTATGAGGTATTTCCACAAGCTTCGT 218
Query 223 AACAAGTTCTTCTGCCCAATCGTTAACCTCGACAAGCTTTGGTCACTCGTCCCTGAAGAT 282
||||||||||| ||||||||||| ||||| |||||||| |||||||| || ||||||||
Sbjct 219 AACAAGTTCTTTTGCCCAATCGTGAACCTGGACAAGCTATGGTCACTTGTTCCTGAAGAC 278
Query 283 GTGAAGGCGAAATCAACCAAGGATAATGTTCCTTTGATCGATGTGACGCAACATGGTTTC 342
|||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 279 GTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGTGACGCAGCATGGTTTC 338
Query 343 TTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAGCCGTTCGTTGTGAAGGCGAAG 402
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 339 TTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTTCGTTGTGAAGGCTAAG 398
Query 403 CTTATCTCGAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTGCTCACT 462
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 399 CTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTTCTCACT 458
Query 463 GCCTAAGTT 471
|| || |||
Sbjct 459 GCTTA-GTT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5