BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476192
Length=3398
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70620.3 | Symbols: | cyclin-related | chr1:26626555-266310... 2675 0.0
> AT1G70620.3 | Symbols: | cyclin-related | chr1:26626555-26631073
FORWARD LENGTH=3249
Length=3249
Score = 2675 bits (1448), Expect = 0.0
Identities = 1735/1869 (93%), Gaps = 38/1869 (2%)
Strand=Plus/Plus
Query 799 GAAGAGTCTGAAAATGCAACACAACATGAGGTGCAGATATCATTGCCTGATGGTGGGGGA 858
|||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 845 GAAGAGTCTGGAAATACAACACAACATGAGGTGCATATATCATTGCCTGATGGTGGGGGA 904
Query 859 CCTGTTCGCACGGAGCAGCATATGCAATATGCATATGGAGATCAATCAGCGGCTCCACCT 918
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 905 CCTGTTCACACGGAGCAGCATATGCAATATGCATATGGAGATCAATCAGCTGCTCCACCT 964
Query 919 AGTAACCTTAGTGAT--C-A-GC----C-TTCCCATACTACAACCGGGGTAGTCTATCCT 969
|||||| |||||||| | | || | ||||||| |||| || ||||||||||||
Sbjct 965 AGTAACTTTAGTGATCACAATGCATGGCAGCCCCATACCACAAGTGGAGTAGTCTATCCT 1024
Query 970 CCAATCCCTTCATCGGTGCAGTCAATACCTCAGAATGACTCATCTATGGCTATACCTCCT 1029
||||| |||||||||| ||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 1025 CCAATTCCTTCATCGGCGCAATCAATACCTCAGCATGACTCATCTATGGCCATACCTCCT 1084
Query 1030 GTTTCGGGTCATATCATGCCTCCATATGGAAGGTTTCCCCCACCAAA-CATCCAGCCTGT 1088
|||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 1085 GTTTCGGGTCATATCATGCCCCCATATGGAAGGTTTCCCCCACCAAATC-CCCAGCCTGT 1143
Query 1089 TGGACCCCCATATGCTTTTGCGACAAAGCCGCCTCTTCACCCTGTTGCAGCATTCATGGA 1148
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1144 TGGACCCCCATATGCTTTTGGGACAAAGCCCCCTCTTCACCCTGTTGCAGCATTCATGGA 1203
Query 1149 TGACTCATATGCAGCATCGTCTGTTCCTCCGAAAAAGGCTCCTGTACCTAACTGGCTCAA 1208
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1204 TGACTCATATGCAGCATCGTCTGTTCCTCCTAAAAAGGCTCCTGTACCTAACTGGCTCAA 1263
Query 1209 GGAAGAATTATTGAAGAAAAAAGCAGATCTTGGAAGGCCTTCTTCAGGGAGTTTTGAGGG 1268
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1264 GGAAGAATTATTGAAGAAAAAAGCAGATCTTGGAAGGCCTTCTTCAGGGAGATTTGAGGA 1323
Query 1269 GAGAGAATCTATGGATGATGATGTACTTTATAAAACTCCTGCCAAAGCTGATCAACGTGG 1328
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||| | ||
Sbjct 1324 GAGAGAATCTATGGATGATGATGTACTTTATAAACCTCCTACGAAAGCTGATCAGCCTGA 1383
Query 1329 CGAAAAAAGCTTCAGCCCCTCCAAATCCTCTGACGGACAAGAAGAAGAGGATGAGGATGA 1388
| ||||||||||||||||||| || |||||| ||| |||||||| | ||||||||
Sbjct 1384 CAAAAAAAGCTTCAGCCCCTCTAATTCCTCT----GAC--GAAGAAGA--A-GAGGATGA 1434
Query 1389 GATGGATGCAGCTAGAACCGCAGAAATTAATATGGAGATAAAGCGTATCTTGACTGAAGT 1448
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1435 GATGGATGCAGCTAGAACCACAGAAATTAATATGGAGATAAAGCGTATCTTGACAGAAGT 1494
Query 1449 CCTTCTTAAGGTTACAGATGAATTATTTGATGAAATTGCAACCAAAGTCATTAATGAAGA 1508
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1495 CCTTCTTAAGGTTACAGATGAATTATTTGATGAAATTGCAACCAAAGTCATTAACGAAGA 1554
Query 1509 TGAAGCAATACCTAAAGATGACAGTGTACAGCACAATCATAAGTCGTCATCATCTCTTCT 1568
||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct 1555 TGAAGCAATACCTAAAGATGATAGTGTACAGCATAATCATAAATTGTCATCATCCCTTCT 1614
Query 1569 CTCCACAGCTGATCCACTCCACAAGGCTTCGGCAAAGATTTTGGTCTCAGTAGAAGGCGC 1628
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1615 CTCCACAGCTGATCCACTCCACAAGGCTTCGGCAAAGATTTTGGTCTCGGTAGAAGGTGC 1674
Query 1629 AAATAAAAAATCTAGTTCTGGCTCTCCAGCAGATGTGCTAGGTCTTGCTAGCTatgcctc 1688
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AAATACAAAAGCTAGTTCTGGCTCTCCAGCAGATGTGCTAGGTCTTGCTAGCTATGCCTC 1734
Query 1689 tgatgatgatgatgctgatactgatgctgcttctaatgcggatactgatgaaaatgatgG 1748
|||||||||||||||||||||||||||||||||| | ||| || |||||||||||| |
Sbjct 1735 TGATGATGATGATGCTGATACTGATGCTGCTTCTGACGCGAATGCTGATGAAAATG--G- 1791
Query 1749 AGTTGAGAGTCTTAGCGTGGGGACAAGACACGATCTTAGTCAGCGGCCAAGCAATGAGAA 1808
||| ||||||||| | |||||| |||||||| || ||||||||| |||||||| ||||||
Sbjct 1792 AGTGGAGAGTCTTGGTGTGGGGTCAAGACACAATGTTAGTCAGCAGCCAAGCACTGAGAA 1851
Query 1809 ACTTCCTGAACCTGAAGCAATGGCCAATGCAAAATTGGATCCAAAAGTTG-ATGTCAATG 1867
||||||||| |||||||||||||||| ||| |||||||||||| ||||| | |||||||
Sbjct 1852 ACTTCCTGACCCTGAAGCAATGGCCAGTGCGAAATTGGATCCAGCAGTTGGA-GTCAATG 1910
Query 1868 CTAGTTCCGGCAAGAATAGTAATTCCGGCTTGGAGGATTATTCTCAGATGCCAGGCTCCA 1927
||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1911 CTAATTCTGGCAAGAATAGTAAGTCAGGCTTGGAGGATTATTCTCAGATGCCAGGCTCCA 1970
Query 1928 -GAAGAAAAGATGATGAGGCAGGTAGTACCAAAATATCAGATGTAAGCGCGAACTCTGGA 1986
|| |||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||
Sbjct 1971 CGA-GAAAAGATGATGAGGCGGGTAGTACCAAAATATCTGATGTAAGCGCCAGCTCTGGA 2029
Query 1987 CTTGATGCTGATACTTCAGGAAGCAGAAAAGAGCATCCTGACAGAACTGATAGTGATAAA 2046
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 CTTGATGATGATACTTCAGGAAGCAGAAAAGAGCATCCTGACAGAACTGATAGTGATAAA 2089
Query 2047 GATGC-AGTACTAGATGAACCTCACGGGAAGAATTCTGGCTTGAAATCAGATTGCCACCT 2105
||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 2090 GATGCCA-TACTAGATGAACCTCACGTGAAGAATTCTGGCGTGAAATCAGATTGCAACCT 2148
Query 2106 TCGTCAGGATAGTAATAAAACTTATGGGAAAGACTTGAGTGATGAAGTGAGTACGGATAG 2165
||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||
Sbjct 2149 TCGTCAGGATAGTAATAAACCTTATGGGAAAGATTTGAGTGACGAAGTGAGTACAGATAG 2208
Query 2166 AAGTAGAACAGAAGAAACGAAAGGTGGAAAAGAGAAAGTAGATTCTCAGAATGGCTCAAA 2225
|||||||| || |||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 2209 AAGTAGAATAGTTGAAACGAAAGGTGGGAAAGAGAAAGGAGATTCTCAGAATGACTCAAA 2268
Query 2226 AGATAGAATGAAGGAGAATGACTTAAAGTCAGCAGAGAAAGTTAAAGGCGTTGAGTCAAA 2285
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2269 AGATAGAATGAAGGAAAATGACTTAAAGTCAGCAGAGAAAGTTAAAGGCGTTGAATCAAA 2328
Query 2286 TAAAAAATCTACTGATCCCCATGTAAAGAAAGACTCGAGGGATGTAGAGAGGCCTCACAG 2345
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2329 TAAAAAATCTACTGATCCCCATGTAAAGAAAGACTCAAGGGATGTAGAGAGGCCTCACAG 2388
Query 2346 AACTAATTCTAAGGAAGACCGGGGTaaaa-aaaaggagaaggaaaaggaagaagaaaggT 2404
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2389 AACTAATTCTAAGGAAGACCGGGGTAAAAGAAAAG-AGAAGGAAAAGGAAGAAGAAAGGT 2447
Query 2405 CAAGACACAGGCGGGCTGAAAACTCGAGCAAGGACAAGAGAAGACGTTCTCCAACCAGTA 2464
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2448 CAAGACACAGGCGGGCTGAAAACTCGAGCAAGGACAAAAGAAGACGTTCTCCAACCAGTA 2507
Query 2465 ATGAATCTTCTGACGATTCAAAGAGAAAGTCCCGTTCTAGAAGAAGGAATGTATCACCAT 2524
||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 2508 ATGAATCTTCTGATGATTCGAAGAGGAAGTCCCGTTCTAGAAGAAGGAGTGTATCACCAT 2567
Query 2525 CTCCTGTGAGGTCCAGAAGAAAACGCTCTTCTCCATCCAGTGATGAACTC-TCTGATGAT 2583
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2568 CTCCTGTGAGGTCCAGAAGAAAACGCTCTTCTCCATCCAGTGATGAA-TCCTCTGATGAT 2626
Query 2584 TCAAAAAGGAAGTCATCATCTTCGAAAAGAA-GAAATCGGTCACCATCTCCGGGAAGGTC 2642
||||||||||||||||| | | | ||||||| ||| |||||||||||| || |||| |||
Sbjct 2627 TCAAAAAGGAAGTCATC-T-T-CAAAAAGAAAGAA-TCGGTCACCATCACCCGGAAAGTC 2682
Query 2643 CAGAAGAAG 2651
|||||||||
Sbjct 2683 CAGAAGAAG 2691
Score = 1120 bits (606), Expect = 0.0
Identities = 698/741 (94%), Gaps = 12/741 (2%)
Strand=Plus/Plus
Query 1 ATGGACGCGTATCAGCCACCGCCTCAGTACCTGAGACCGCCGTCTGGACCACCGCCTCCG 60
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 80 ATGGACGCGTACCAGCCACCACCTCAATACCTGAGACCGCCGTCTGGACCACCGCCTCCG 139
Query 61 GCGGATCCTTACCACCAATACTATCATCATCAGGCGAGACCACCGGTGCCTCCTCCTACG 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 140 ACGGATCCTTACCACCAATACTATCAGCATCAGGCGAGACCACCGGTGCCTCCTCCTACG 199
Query 121 CAGCCCGGTGGTCCTCCTACATGGTACTCCAACCAATTTCATAACCCTCACTCTCCATCG 180
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 200 CAGCCCGGTGGTCCTCCTGCATGGTACTCCAACCAATTTCATCACCCTCACTCTCCATCG 259
Query 181 CCACCACCTCCACCTCCGCCGCAGTGGGGACCACCTTCGCCGCATTATCCTCAAGGCCAA 240
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 260 CCACCGCCTCCACCTCCGCCGCAGTGGGGGCCACCTTCACCGCATTATCCTCAAGGCCAA 319
Query 241 CCTTACTCTTCTTCCGGTTATCCTCCTCACCAGCCGCCCTTCAGCGCCGTCGCTAATGGT 300
|||||||||||| ||| ||||||||||||||||||||| |||| ||||| |||||| |||
Sbjct 320 CCTTACTCTTCTCCCGCTTATCCTCCTCACCAGCCGCCATTCAACGCCGGCGCTAACGGT 379
Query 301 AACAGTCAGTTTCCTCCTCCATCTACCGGTGCGCCGATTCCTGCGCCATATCCTCAGGCT 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 380 AACAGTCAGTTTCCTCCTCCATCTACCGGTGCGCCGATTCCTCCGCCATATCCTCAGGCT 439
Query 361 AATCAGGAATGGGGCAATCCAAGTTGGGGGTATCAACAACAACAAGGTCACACTCCTCAA 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 440 AATCAGGAATGGGGCAATCCAAATTGGGGGTATCAACAACAACAAGGTCACACCCCTCAA 499
Query 421 GCTAATAGCAACGTCGAGGACTGGGCAGTGAAAGCCAAAGAATGGGCAGCTGCGAACAAG 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 500 GCTAATAGCAACGTCGAGGACTGGGCTGTGAAAGCCAAAGAATGGGCAGCTGCGAACAAG 559
Query 481 GATCAGCAATCACAG---TCTGCACCGAACCAACCTAGTGGACAAGTCTACCAGCAGCAG 537
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 560 GATCAGCAATCACAGCAGTCTGCACCGAACCAACCTAGCGGACAAGTCTACCAGCAGCAG 619
Query 538 TACCCTACTCATGGCTATCAAGATGTTCATCAACAGGCGGCGGTTCCAGGAGTCAGCTAT 597
|| ||||||||||||||||||||| ||||||||||||| | |||||||||| ||||||
Sbjct 620 TATCCTACTCATGGCTATCAAGATTTTCATCAACAGGCAG---TTCCAGGAGTAAGCTAT 676
Query 598 CAGCAGCA---G---TTTCCAGTTCCACCCACAACACAGCCGGAGAGATATCCAAATTAT 651
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 677 CAGCAGCATCAGCAGTTTCCAGTTCCACCCACAACACAGCCCGAGAGATATCCAAATTAC 736
Query 652 GCAACAGGACACGAGAGTTTTCCTGGAGGTGGATTGCCCCAAGAAAACCTGCCTTCCAGT 711
||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 737 GCAACAGGAAACGAGAGCTTTCCTGGAGTTGGATTGCCCCAAGAAAACCTGCCTACCAGT 796
Query 712 TCTGCAATTCATCAGCAGGAG 732
|||||||||||||||||||||
Sbjct 797 TCTGCAATTCATCAGCAGGAG 817
Score = 479 bits (259), Expect = 8e-134
Identities = 343/381 (90%), Gaps = 16/381 (4%)
Strand=Plus/Plus
Query 3019 CAGGTCAAAGCGGTCAAGATCCAGATCAAGATCCCCCCACAGGCGCCATCGTGCTAAATG 3078
|||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct 2874 CAGGTCGAAGCGGTCAAGGTCCAGATCAAGATCCCCCCACAGGCGCCATC--G-TAAATG 2930
Query 3079 AACACTCTAGCAAACTGGTGTAAGACTGTATGCGGGACAATGTTGTACGCGGTGGATCAA 3138
||||||||||||||||||| | |||||||| ||||||||| |||| ||||||||||||
Sbjct 2931 AACACTCTAGCAAACTGGTCTGAGACTGTACCCGGGACAATATTGTGCGCGGTGGATCAC 2990
Query 3139 AGGATTGGGTTAATGTACTGGACGGACATCGATATAACCAAAAACTATAAAGTCACCGGT 3198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2991 AGGATTGGGTTAATGTACTGGACGGACATCGATATAATCAAAAACTATAAAGTCACCGGT 3050
Query 3199 TTGTGAGCGAAATAGTGCATTGTGAACCGCTCTTTCCTTAGTTCTTGAGAAGAGAA-ATC 3257
|||||||||||||||||||| || |||||||||||||||||||||| |||||| || |||
Sbjct 3051 TTGTGAGCGAAATAGTGCATAGTAAACCGCTCTTTCCTTAGTTCTTCAGAAGA-AATATC 3109
Query 3258 CAAAGATTTTTGACTGAGACTAGTTTGACGATATTGTTGGTTGGTTAAGCGTTCCTATGT 3317
||||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||
Sbjct 3110 CAAAGATTTTTGACTGA--CTTGTTTGACAATATCGTTGGTTGGTTAAGCGTTCCTATGT 3167
Query 3318 AAAAATTTGTTCTTTCTCTGAAACATTGCATTACCAAAATCTGTGTCTTATGTTCTTACC 3377
|||| ||||||| |||||||||||||||||| | |||||| |||||| | | |
Sbjct 3168 AAAATTTTGTTCC--CTCTGAAACATTGCATTATCTAAATCTATGTCTT-TA--C--A-- 3218
Query 3378 TTCCACATTCTAATGAAATCG 3398
|||||||||||||||||||||
Sbjct 3219 TTCCACATTCTAATGAAATCG 3239
Score = 292 bits (158), Expect = 1e-77
Identities = 182/193 (94%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 2743 AAGAACTTTTGGAAGCAAAAGGTTTGAC-AAAAGACAATAATGGGTAAGCCAAGCGGAGT 2801
||||||| ||| |||||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct 2689 AAGAACTATTGAAAGCAAAAAGTTTGACAAAAAGAC---AATGGGTAAGCCAAGCGGAGT 2745
Query 2802 AGCTAGTATGAAAACTCACCACAAAACGTATCATATATGTTTTGATTGTATAGACATGTT 2861
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2746 AGCTAGTAAGAAAACTCACCACAAAAAGTATCATATATGTTTTGATTGTATAGACATGTT 2805
Query 2862 TCTTCGCGGTCACCACATAGCAAGCATTCTCAGCACAAGCACACTCTCTACTCTTCTCAT 2921
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2806 TCTTCGCGGTCACCACATAGCAAGCATTCTCAGCACAAGAACACTCTCTACTCTTCTCAT 2865
Query 2922 GAAAAATCCAGGT 2934
|| ||||||||||
Sbjct 2866 GACAAATCCAGGT 2878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169112764853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5