BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476193
Length=2165
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70630.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 3110 0.0
> AT1G70630.1 | Symbols: | Nucleotide-diphospho-sugar transferase
family protein | chr1:26631232-26634102 FORWARD LENGTH=2243
Length=2243
Score = 3110 bits (1684), Expect = 0.0
Identities = 2033/2193 (93%), Gaps = 57/2193 (3%)
Strand=Plus/Plus
Query 1 TCTGCAATCAATTTCTTGAAGATGACGAAAAGCGTTCACATG---------tcttcttct 51
|||| || |||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1 TCTGAAAACAATTTCTTGAAGATGACGAAAAGTGTTCACATGTCTTCTTCTTCTTCTTCT 60
Query 52 tcttcttc--C-CCATTCCTCCCGCCGGCTATCCGC-T--T---C---TTGAAGTTTTGG 99
|||||||| | |||||||||||||||||| ||||| | | | ||||||||||||
Sbjct 61 TCTTCTTCTTCACCATTCCTCCCGCCGGCTTTCCGCTTCATCACCATTTTGAAGTTTTGG 120
Query 100 GTCTTCGAGCTGGGCTGTTGTCTATTTGGCTATCTGGGTTTCTTCTAATTGCTCTCTCTT 159
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GTCTTCGAGCTGGGCTCTTGTCTATTTGGCTATCTGGGTTTCTTCTAATCGCTCTCTCTT 180
Query 160 TCTACGGCACTCAGCTTCTATCTCCAACTTCACTCAATGATCCATTCAGATACTCTGGCG 219
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 181 TCTACGGCACTCAGCTTCTATCTCCAACTTCACTCAATGACCCATTTAGATACTCTGGCG 240
Query 220 ATTCCATTGCTGCTGCTGCTCCAAGAATCACCATTTTCACTTCTTTCAATG--------- 270
||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ATTCCATTGCTACTGCTGCTCCAAGAATCACCATTTTCACTTCTCTCAATGTCTCCTCCT 300
Query 271 GGGAAGGAAATAGCCAAGCTTTACTTGCTCTTCGTTCATGGCTCGCTTTGTCTTCCCATA 330
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TGGAAGAAAATAGCCAAGCTTTACTTGCTCTTCGTTCATGGCTCGCTTTGTCTTCCCAAA 360
Query 331 TCACAGTTGTTTTATT---T----------AC-TCAAC-AC-A-AA-AACAGC--CC-TT 369
|||| ||||||||||| | || |||| || | || |||| | || |
Sbjct 361 TCACTGTTGTTTTATTCACTCAACACAACAACAACAACAACAACAACAACAACAACCACT 420
Query 370 CTTCTGATTCTTCTTCATTCACCGACAAATTTGGTTCCCGTCTTCTTCTTGATTCCACCG 429
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CTTCTGATTCTTCTTCATTCACCGACAAATTTGGTTCTCGTCTTCTTCTTGATTCCACCA 480
Query 430 TTGATTTCACGTTTCTTGGCACTCCATTTTTACATTCGATGCTGGCGAGAAGTGAAGCTT 489
||||||||||||||||||| ||||||||||||||||||||| || |||||| ||||||||
Sbjct 481 TTGATTTCACGTTTCTTGGAACTCCATTTTTACATTCGATGATGTCGAGAATTGAAGCTT 540
Query 490 ATCAATCAGATATAGCTGTTCTGATGGATCCAGAGACTGTTTTACTGCCAGATTTCATAT 549
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCAATCAGATATAGCTGTTCTAATGGATCCAGAGACTGTTTTACTGCCAGATTTCATAT 600
Query 550 CTGCTTTGAGTTATGCTCACCAGCTTGATCGTGATTGGCTTCTTGTTTCTTCATCAGTAG 609
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 601 CTGCTTTGAGTTATGCTCACGAGCTTGGTCGTGATTGGCTTCTTGTTTCTTCATCAGT-G 659
Query 610 G-AATTCCCCGTTTCCCGTTCCATTGGGACGAAACAAGGCATTTTTGGCGTCAGGACAAT 668
| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 660 GAAATTCCCCGTTTCCCGTTCCATTGGGATGAAACTAGACATTTTTGGCGTCAGGACAAT 719
Query 669 GGGAAAAGAGTGAGATTTGGGGAGTTGCAAAAGATGATAAGCTTGCGGAGTTTGCAATCA 728
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 GGGAAAAGAGTGAGATTTAGGGAGTTGCAGAAGATGATAAGCTTGCGGAGTTTGCAATCA 779
Query 729 AATTCTAGTG-AAGGCAAAATGATTATGGCATGGAACAACATTGATATGCCCTTGCACTG 787
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AATTCTAGCGCAA-GCAAAATGATTATGGCATGGAACAACATTGATATGCCCTTGCACTG 838
Query 788 TGGAGTACTTCCACCTTTTTTGTATCAAAGAGGAATTCATAATCAATGGATCATTAACGA 847
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 839 TGGAGTGCTTCCACCTTTTTTGTATCAAAGAGGTACTCATAATCAATGGATCATTAACGA 898
Query 848 AGCTATGTCATGTAAAAGAAGGTTTGTGTTTGATGCCACTTCAACCATATCGAGCTTGTT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 AGCTATGTCATGTAAAAGAAGGTTTGTGTTTGATGCCACTTCAACCATATCGAGCTTTTT 958
Query 908 CCTAGGCAATGGAGAGAACATAGATAATAGGAGTGATAATGTCTCAGAACCCAACACAAG 967
||||||||||| |||||||||| | ||||||||||||||||||||||||||||| || ||
Sbjct 959 CCTAGGCAATGCAGAGAACATATACAATAGGAGTGATAATGTCTCAGAACCCAAAACGAG 1018
Query 968 AAACTGGGAATATATTGGAAACTCCCGTCTCGGGCAGCTCTACGGGTCATTGTTCTCTAG 1027
||||||||||||| | |||||||||| ||| ||||||||||| || ||||||| ||||||
Sbjct 1019 AAACTGGGAATATGTAGGAAACTCCCATCTTGGGCAGCTCTATGGTTCATTGTACTCTAG 1078
Query 1028 GTCTTATACTTTACCTAAGCTTTTGAAGTGCAACAAG-CGCTATATGTTTGTTAGCGCTT 1086
||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1079 GTCTTATACGCTACCTAAGCTTTTGAAGTGCAAC-AGACGCTATATCTTTGTTAGCGCTT 1137
Query 1087 CAGATCGTTCCACTGATCTGTCTATACCAAAAGGAAAGAGTTTAGGATTTCGGACACGAG 1146
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CAGAGCGTTCCACTGATCTGTCTATACCAAAAGGAAAGAGTTTAGGATTTCGGACACGAG 1197
Query 1147 AGAAGATCTCAGCTTGTATCAGTAGGACTAAATCGCGGAGTTTGAAATTAGATTTTGTGC 1206
||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 1198 AGAAGATCTCAGCTTGTATCACTAGAACTAAATCGCGGAGCTTGAAATTAGATTTTGTGC 1257
Query 1207 AGAAAGATGAGGCAGTGCCACCATTGAAGTTTCCTTTTGACCTGGAGTCTCTTCTCCCAT 1266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGAAAGATGAGACAGTGCCACCATTGAAGTTTCCTTTTGACCTGGAGTCTCTTCTCCCAT 1317
Query 1267 TAGTTGCAGACAAGAACAGAACTGTTGTTCTTTCAATTGCTGGGTATAGCTACAAGGACA 1326
||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1318 TAGTTGCAGACAAAAACAGAACTGTTGTTCTTTCAGTTGCTGGGTATAGCTATAAGGACA 1377
Query 1327 TGCTGATGAGTTGGGTCTGCAGATTACGCCGCCTCAAAGTTCCAAATTTCTTAGTTTGTG 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TGCTGATGAGTTGGGTCTGCAGATTACGCCGCCTCAAAGTTCCAAATTTCTTAGTTTGTG 1437
Query 1387 CCCTTGATGATGAAACTTATCAATTTTCTATATTGCAGGGTCTGCCAGTTTTCTTTGATC 1446
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1438 CCCTTGATGATGAAACTTATCAGTTTTCTATTTTGCAGGGTCTGCCAGTTTTCTTTGATC 1497
Query 1447 CATACGCTCCAAAGAATATAAGCTTCAATGACTGCCACTTTGGATCAAAGTGTTTCCAGA 1506
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CATACGCTCCAAAGAACATAAGCTTCAATGACTGCCACTTTGGATCAAAGTGTTTCCAGA 1557
Query 1507 GAGTGACCAAAGTTAAGTCAAGAACAGTTTTGAAGATTCTGAAGTTGGGCTATAACGTTC 1566
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1558 GAGTGACCAAAGTCAAGTCAAGAACAGTTTTGAAGATACTGAAGCTGGGCTATAACGTTC 1617
Query 1567 TCTTGAGTGATGTAGATGTATATTGGTTCAGAAACCCGTTGCCTCTGCTTCAATCTTTCG 1626
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1618 TCTTGAGTGATGTAGATGTATATTGGTTCAGAAACCCGTTGCCTCTGCTTCAGTCTTTCG 1677
Query 1627 GTCCTTCTGTTCTTACCGCACAATCCGATGAATACAACACAACAGTACCGATAAACCGAC 1686
|||||||||||||| | |||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 1678 GTCCTTCTGTTCTTGCAGCACAATCTGATGAATACAATACAACAGCACCGATAAACCGAC 1737
Query 1687 CAAGGCGCTTGAACTCAGGATTCTACTTTGCACGTTCAGATGGCCCGACTATAGCAGCAA 1746
||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |
Sbjct 1738 CAAGGCGCTTGAACTCAGGATTCTACTTTGCACGTTCTGATAGCCCGACGATAGCAGCGA 1797
Query 1747 TGGAGAAAGTGGTAAAGCATGCTGCAACCTCCAGTCTTTCGGAGCAGCCTAGCTTCTACG 1806
||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1798 TGGAGAAAGTGGTGAAGCATGCTGCAACCTCCGGTCTTTCGGAGCAACCTAGCTTCTACG 1857
Query 1807 ACACTTTATGCGGAGAAGGTGGAATTTATCGCGTGGGAGACGATAAATGCCTTGAACCAG 1866
| ||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||
Sbjct 1858 ATACTTTATGCGGAGAAGGTGGAGCTTATCGCTTGGGAGACGATAGATGTGTTGAACCAG 1917
Query 1867 AGACAAACCTGACCGTTCATTTCTTAGACAGAGAGCTGTTCCCGAACGGAGCTTACGGAG 1926
||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| |
Sbjct 1918 AGACAAATCTGACTGTTCAGTTCTTGGACAGAGAGCTATTCCCAAACGGAGCTTACGGGG 1977
Query 1927 ATCTATGGCTGAAGGAAGACGTAAGAGGAGAGTGCGAGAAGAAGCAGTGCTTCGTTCTAC 1986
|||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 1978 ATCTATGGCTTAAGGAAGACGTAAGAGCAGAGTGCGAGAAGAAGCATTGCTTTGTTCTAC 2037
Query 1987 ATAACAACTGGATCAGTGGAAGACTGAAGAAACTCGAACGCCAAATGATGGAAGGTCTAT 2046
| ||||||||||| || || |||||||||||||| ||||||||||||||| |||||||||
Sbjct 2038 ACAACAACTGGATTAGCGGGAGACTGAAGAAACTTGAACGCCAAATGATGAAAGGTCTAT 2097
Query 2047 GGGAATATGACGCATCCATGAGGATGTGTGTGTAGAGATGACAAGGTTATACAAGTTAGA 2106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 GGGAATATGACGCATCCATGAGGATGTGTGTGTAGAGATGACAAGGTTATACAAGTTAGA 2157
Query 2107 TACTTAGATGGGACATTCAAAGGCTCTTGGTAT 2139
|||||||||||||||||||| ||||||||||||
Sbjct 2158 TACTTAGATGGGACATTCAACGGCTCTTGGTAT 2190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107378965755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5