BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476194
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70650.1 | Symbols: | Ran BP2/NZF zinc finger-like superfam... 1988 0.0
> AT1G70650.1 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr1:26638076-26640204 FORWARD LENGTH=1561
Length=1561
Score = 1988 bits (1076), Expect = 0.0
Identities = 1311/1421 (92%), Gaps = 30/1421 (2%)
Strand=Plus/Plus
Query 14 TCTCATGACGAGATTCTTCAAGACCGACCATAGATTGTTCCATCGGATCATTAGGTACAC 73
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 79 TCTCATGTTGAGATTCTTCAAGACCGACCATAGATTGTTCCATCGAATCATCGGGTACAC 138
Query 74 AAAACCATTCCACGGTCTGGCTAAAACCCAAAACGCTGAGATCTCTAGACCAGGTTTGGT 133
|| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 139 AAGACCATTCCACGGTCTAGCTAAAACCCAAAACGCTGAGATCGCTAGACCAGGTTTGGT 198
Query 134 TGATCCAAGCTCGCACCCATGGCCCGAGTGGCTAGATTTAATTGGGATGCTAGCGAAAAA 193
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 199 TGATCCAAGCTCGCACCCGTGGCCCGAGTGGCTAGATTTAATGGGGATGCTAGCTAAAAA 258
Query 194 AGGTTACTTCGTAGAAAGCAGCATGAATCCATTGATGAGTTCTAAGGAATCGAATCATAT 253
||||||||| | || || ||| ||| ||||||||||||||| |||||||| ||||||||
Sbjct 259 AGGTTACTTTGAAG-AA--AGCTTGATTCCATTGATGAGTTCCAAGGAATCTAATCATAT 315
Query 254 TCGTACTGCTTGTCTCAATTTTGCCCGCCATCGTTTCACTCTCGTCAGATACTTGTCAAA 313
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 316 TCGTACAGCTTGTCTCAATTTCGCCCGCCATCGTTTCACTCTCGTCAGAAACTTGTCGAA 375
Query 314 GAAAGATATCAAAGTGATTGCTGGCTGTGGATGTCCTAGCACTGATAGAAAGGTCGTGAA 373
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 376 GAAAGATATCAAAGTGATTGCTGGGTGTGGATGTCCAAGCACTGATAGGAAGGTCGTGAA 435
Query 374 CTCGGGAAAGCGTTTAAGAGCTTATGTGGGTATTGATGAAGGAAATGTGTGTGGCTCTTG 433
||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 436 CTCAGGAAAGCGTCTAAGAGCTTATGTGGGCATTGATGAAGGAAATGTGTGTGGCTCCTG 495
Query 434 CAACTTGAGAGGGGAATGCCAAAGGGCGTATGCACAAGCACGAGATGATGAAGGTGTTCG 493
||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |||
Sbjct 496 CAACTTGAGAGGGAAATGTGAAAGGGCGTATGCACAAGCACGGGATGATGAAGGTGCTCG 555
Query 494 AACTATAGATATCATGCGTATACTTTTAACTTATGGGCTTGATTCCATTTCTCCTACTGT 553
|||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 556 AACTATAGATGTCATGCGTTTACTGCTAACTTATGGGCTTGATTCCATTTCTCCTACTGT 615
Query 554 GGAGAATCGTGCCTGTCAAACCAAACTTGTTGAAGATTCTGTGAGGAAGTTGCTTAGAGA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 616 TGAGAATCGTGCCTGTCAAACCAAACTTGTTGAAGATTCTGTGAGGAAGTTGCTCAGAGA 675
Query 614 AAGTGTAGCCTATAGCTTAAAAGATTTTGAATCTGCTGAGACTCAGACAGCTGGAGATGA 673
||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 676 AAGTGTAGCGTATAGCTTAACAGATTTTGAATCTGCTGAGACTGAGACAGCTGGAGATGA 735
Query 674 GCTCCAGCCAAATTCACAGGAC-TGTGAGGAGAGAGATCCACGAAAAAGGCCAGGGGATT 732
|||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||
Sbjct 736 GCTCCAGCCAAATTCACAGGACAT-TGATGAAAGAGATCCACGAAAAAGGCCAGGGGATT 794
Query 733 GGCATTGTACAGAATGCAAGTTCCTAAATTTTGCGAAAAACATTAGATGCTTGCGATGTG 792
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 795 GGTATTGTACAGAATGCAAGTTTCTAAATTTTGCGAAAAACATAAGATGCTTGCGATGTG 854
Query 793 ATGTGTTTTCTGAGGAAAGGCTGAAACAGTTGAAGGAAGAACAGAAAGATCATCTCCCAC 852
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 855 ATGTTTTTTCTGAGGAAAGGCTTAAACAGTTGAAGGAAGAACAAAAAGATCATCTCCCAC 914
Query 853 TGAAGAAAGGAGACTGGATTTGTCAAACATGCAATTTCCTGAACTTTTCGAAAAACACAA 912
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 915 TGAAGAAAGGAGATTGGATTTGTCAAACATGTAATTTCCTGAACTTTTCGAAAAACACGA 974
Query 913 GATGCTTAAGGTGCAAAGACAAGCCTACATTGCGTCAAATCAATCCGGGAGAGTGGGAAT 972
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 975 GATGCTTAAGGTGCAAAGACAAGCCTACATTGCGTCAAATCAATCCCGGAGAGTGGGAAT 1034
Query 973 GCGAGTCGTGCAATTACATCAATTTCAGAAGAAACGC-AGTATGTTTGAAGTGTGATCAC 1031
||||||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||
Sbjct 1035 GCGAGTCGTGCAATTACATCAATTTTAGAAGAAACTCTA-TATGTTTGAAGTGTGATCAC 1093
Query 1032 AAGAGACAAAAGGCTTCAAATGTCA-TACCGGATTCAAAGATGGGTAG-TGATCGTCACA 1089
||||||||||||||| |||| |||| | ||||||||||||| | | | ||||||||| |
Sbjct 1094 AAGAGACAAAAGGCTGCAAACGTCACT-CCGGATTCAAAGACAGTT-GCTGATCGTCA-A 1150
Query 1090 AT-GGAGTTACAAAGACGTGGAGTTTTGTagaagaaggagaagaag-aagaac-a-g-aa 1144
| |||||||||||||||||||| ||||||||||||| ||| | | || ||| | | ||
Sbjct 1151 AGCGGAGTTACAAAGACGTGGAGCTTTGTAGAAGAAG-AGA-GT-GTAA-AACGATGCAA 1206
Query 1145 -gg--aagaaaaagaagaagaagaTGGCTTCATGAGATTTCCAGTGGAAGGAGGGAGAAG 1201
|| ||||| | |||||||||||||| |||||| |||||||||| || |||||||||||
Sbjct 1207 TGGCGAAGAAGAGGAAGAAGAAGATGGTTTCATGGGATTTCCAGTAGAGGGAGGGAGAAG 1266
Query 1202 TAATGTTTCAAAGAGCGCAGAAAAGAGAGAGCAATGGAAGTTGGAGATGACAGAGAGGAT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1267 CAATGTTTCAAAGAGCGCAGAAAAGAGAGAGCAATGGAAGTTGGAGATGACACAGAGAAT 1326
Query 1262 TAGAAGCAATGGGACTGAAGCGAAAAAAGATCATGATACGAAGAAGAAGAACGAAAAAGA 1321
|||||||||||||||| |||||||||||||| || |||||||||| ||||| |||
Sbjct 1327 TAGAAGCAATGGGACTAAAGCGAAAAAAGATGATAATACGAAGAA------CGAAACAGA 1380
Query 1322 GTCAAGATGTTATGACCGGAGAAGAAATGAGCTTCTTGGTAACATTAGTGATGATGGAGA 1381
||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 GTCAAAATGTTATGATCGGAGAAGAAATGAACTTCTTGGTAACATTAGTGATGATGGAGA 1440
Query 1382 GATGGATGATTGGTTTGTTTCAAAACAAGATAGATCGACTT 1422
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GATGGATGATTGGTTTGTTTCAAAACAAGATAGATCGACTT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70632166815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5