BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476195
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70660.1 | Symbols: MMZ2, UEV1B | MMS ZWEI homologue 2 | chr... 1105 0.0
AT1G23260.1 | Symbols: MMZ1, UEV1A | MMS ZWEI homologue 1 | chr... 542 2e-153
> AT1G70660.1 | Symbols: MMZ2, UEV1B | MMS ZWEI homologue 2 | chr1:26640595-26642149
FORWARD LENGTH=840
Length=840
Score = 1105 bits (598), Expect = 0.0
Identities = 706/757 (93%), Gaps = 12/757 (2%)
Strand=Plus/Plus
Query 34 TTCTTCATCTACTCTCGCC-AA---ATCCTTCAGATACTGCTCTGTAATTTTCACCACAA 89
|||||||||| |||| ||| || |||||||||||||| |||||||| |||||| ||||
Sbjct 89 TTCTTCATCTTCTCTAGCCGAATCCATCCTTCAGATACTACTCTGTAA-TTTCACTACAA 147
Query 90 TCATCTCAGCCAAATGGGTTCGGAAGAAGAGAAGGTCGTTGTTCCCAGAAACTTTAGATT 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 TCATCTCAGCCAAATGGGTTCGGAAGAAGAGAAGGTCGTTGTTCCCAGAAACTTTAGATT 207
Query 150 ATTAGAAGAGCTTGAAAGAGGTGAGAAAGGAATTGGAGATGGCACTGTGAGCTATGGAAT 209
||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 208 ATTGGAAGAGCTAGAAAGAGGTGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAAT 267
Query 210 GGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTATTGGTCCTCACAC 269
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 268 GGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAA 327
Query 270 TACTGCGTATGAAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGAAAGGATTATCCGGA 329
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 328 TACTGCGTATGAAGGGAAAATCTTTCAGCTGAAGCTATTCTGTGGAAAGGATTATCCGGA 387
Query 330 AAGTCCACCTACTGTGAGGTTCCAGACTCGGATAAACATGGCTTGTGTCAATCCTGAAAA 389
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||
Sbjct 388 AAGTCCACCTACTGTGAGGTTTCAGAGTCGTATAAACATGGCTTGTGTCAATCCTGAGAA 447
Query 390 TGGAGTGGTTGATCCGAGTCACTTCCCTATGCTCTCCAACTGGAGAAGAGAATACACCAT 449
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 448 TGGAGTGGTTGATCCGAGTCACTTCCCTATGCTTTCCAACTGGAGAAGAGAATTCACAAT 507
Query 450 GGAGGATTTACTGATTCAGCTTAAAAAAGAAATGATGTCATCGCAGAACCGCAAGTTAGC 509
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GGAGGATCTACTGATTCAGCTTAAAAAAGAAATGATGTCATCGCAGAACCGCAAGTTAGC 567
Query 510 TCAACCCTTGGAAGGTAATGAGGAAGGAAGAACAGACCCAAAGGGACTAGTGGTGAAATG 569
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 568 TCAACCCTTGGAAGGTAATGAGGAAGGCAGGACAGACCCAAAGGGACTAGTGGTGAAATG 627
Query 570 TTGTGTCATGTGAGGA-AGGCAATGAGGAATTTGTAAGAATTTAAGAGACAAA-CAATGT 627
||| || |||||| | ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 628 TTGCGTGATGTGAAAAGAGGTAATGAGGAATTTATAAGAATTTAAGAGACAAAACAATGT 687
Query 628 ATATAAAGATCATT-GAAAAGGCTTTGAGATTGTCTGCCTCAGAACCCTTTCTTCTACAG 686
||||||| | |||| ||| ||||||||||||| |||| |||||||||||||||| ||
Sbjct 688 ATATAAACAGCATTTGAAG-GGCTTTGAGATTG---GCCTAAGAACCCTTTCTTCTATAG 743
Query 687 GCCTTCTTAATCCTGCCATTTGATTATGTATTATGTAATATTTGAGAATATATCCACCAA 746
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 744 GCCTTCTTAATCCTACCATTTGATTATGTATTATGTAATATTTGAGAATATATTCACCAA 803
Query 747 AAACAGGTGCCCTTAATAGACCTCCATTCTCCTTCAC 783
|||||||||||||||||| ||||||| ||| ||||||
Sbjct 804 AAACAGGTGCCCTTAATAAACCTCCACTCTTCTTCAC 840
> AT1G23260.1 | Symbols: MMZ1, UEV1A | MMS ZWEI homologue 1 | chr1:8256986-8258688
REVERSE LENGTH=815
Length=815
Score = 542 bits (293), Expect = 2e-153
Identities = 425/489 (87%), Gaps = 8/489 (2%)
Strand=Plus/Plus
Query 103 ATGGGTTCGGAAGAAGAGAAGGTCGTTGTTCCCAGAAACTTTAGATTATTAGAAGAGCTT 162
||| ||||||| |||| |||||||||||||| || ||||||||||| || |||||||||
Sbjct 116 ATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTTTAGATTGTTGGAAGAGCTT 175
Query 163 GAAAGAGGTGAGAAAGGAATTGGAGATGGCACTGTGAGCTATGGAATGGATGATGCTGAT 222
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 176 GAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTTAGCTATGGAATGGATGATGCTGAT 235
Query 223 GATATTT-TGATGCAATCTTGGACTGGTACCATTATTGGTCCTCAC-ACTACTGCGTATG 280
||||||| | ||||||||||||||||| |||||| ||||||||| | | |||||| ||||
Sbjct 236 GATATTTAT-ATGCAATCTTGGACTGGCACCATTCTTGGTCCTC-CTAATACTGCATATG 293
Query 281 AAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGAAAGGATTATCCGGAAAGTCCACCTA 340
|||||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |
Sbjct 294 AAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGTAAGGAGTACCCTGAAAGTCCACCGA 353
Query 341 CTGTGAGGTTCCAGACTCGGATAAACATGGCTTGTGTCAATCCTGAAAATGGAGTGGTTG 400
|||||||||||||||| |||||||||||||||||||| || || |||| |||||||||||
Sbjct 354 CTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCCAGAAACTGGAGTGGTTG 413
Query 401 ATCCGAGTCACTTCCCTATGCTCTCCAACTGGAGAAGAGAATACACCATGGAGGATTTAC 460
| ||||||| ||||||||||||| | |||||| | ||||||| || |||||||| |||
Sbjct 414 AACCGAGTCTCTTCCCTATGCTCACTAACTGGCGGCGAGAATATACAATGGAGGACATAC 473
Query 461 TGATTCAGCTTAAAAAAGAAATGATGTCATCGCAGAACCGCAAGTTAGCTCAACCCTTGG 520
|| || |||| ||||||||||||||| | ||||| ||||| ||||||||||||||| ||
Sbjct 474 TGGTTAAGCTGAAAAAAGAAATGATGACTTCGCATAACCGGAAGTTAGCTCAACCCCCGG 533
Query 521 AAGGTAATGAGGAAGGAAGAACAGACCCAAAGGGACTAGTGGTGAAATGTTGTGTCATGT 580
||||||| ||||||| || |||| ||||| |||| || | ||||||||||| ||||
Sbjct 534 AAGGTAACGAGGAAGCTAGGGCAGATCCAAAAGGACCAGC--T-AAATGTTGTGTGATGT 590
Query 581 GAGGA-AGG 588
|| || |||
Sbjct 591 GAAGAGAGG 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5