BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476197
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70690.1 | Symbols: HWI1, PDLP5 | Receptor-like protein kina... 1674 0.0
> AT1G70690.1 | Symbols: HWI1, PDLP5 | Receptor-like protein kinase-related
family protein | chr1:26652013-26653643 FORWARD
LENGTH=1248
Length=1248
Score = 1674 bits (906), Expect = 0.0
Identities = 1088/1173 (93%), Gaps = 23/1173 (2%)
Strand=Plus/Plus
Query 1 ATGTTCAAGACAAAGACGACGACGTCCCTTCTCTGTTTCTTTCTCATC-GCCGTCATCCT 59
||| ||||||| || | |||||||||||||||||||||| |||||| | ||||| || ||
Sbjct 87 ATGATCAAGAC-AA-A-GACGACGTCCCTTCTCTGTTTCCTTCTCA-CAGCCGTTATACT 142
Query 60 TATGAACCCATCTTCCTCCTCCCCCACGGACAATTACATATACGCCGTTTGTTCTCCGGC 119
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 143 AATGAACCCATCTTCCTCCTCCCCCACTGACAATTACATATACGCCGTTTGTTCTCCGGC 202
Query 120 AAAATTCTCTCCTAGCTCCGGCTACGAGACAAATCTAAACTATCTCCTCTCTTCCTTCGT 179
|||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 203 TAAATTCTCCCCTAGCTCCGGCTACGAGACAAATCTTAACTCCCTCCTCTCTTCCTTCGT 262
Query 180 CAGCTCCACCGCCCAAAGCCGCTACGCCAACTTCACGGTTCCCACCGGAAAACCGGAACC 239
|| ||| |||||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 263 CACCTCAACCGCCCAAACCCGCTACGCCAACTTCACAGTTCCCACCGGGAAACCGGAACC 322
Query 240 AACCGTTACCGTATACGGCCTTTACCAGTGCCGCGGCGACCTCGACCCAACCGCCTGCTC 299
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 323 AACCGTTACCGTATACGGTATTTACCAGTGCCGCGGCGACCTAGACCCAACCGCCTGCTC 382
Query 300 GACGTGCGTATCAAGCGCCGTCGCACAGGTTGGAACCTTATGTTCTAACTCATATTCAGG 359
|||||||||||||||||||||||||||||| ||| |||||||||| ||||| || || ||
Sbjct 383 GACGTGCGTATCAAGCGCCGTCGCACAGGTCGGAGCCTTATGTTCAAACTCGTACTCCGG 442
Query 360 GTTCTTGCAGTTGGAGAATTGTCTGATCCGTTACGACAACAAATCGTTCCTTGGGATTCA 419
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 443 GTTCTTGCAGATGGAAAATTGTCTGATCCGTTACGACAACAAATCGTTCCTTGGGGTTCA 502
Query 420 AGACAAAACGTTGATCCTCAACAAATGTGGACAGGCGATGGAATTCAACGACCAGGATGC 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 503 AGACAAAACGTTGATCCTCAACAAATGTGGACAGCCGATGGAATTCAACGACCAGGATGC 562
Query 480 GTTGACCAAAGTTAGTGACGTCATCGGTTCTTTAGGTTCCGGAGATGGACCTTACAGGAA 539
||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 563 GTTGACCAAAGCTAGTGACGTCATCGGTTCTTTAGGTACCGGAGATGGATCTTACAGG-A 621
Query 540 C-GGTGGCAACGGGAATGTTCAAGGTGTGGCTCAGTGCTCCGGCGATCTAAGTACATCAC 598
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 622 CAGGTGGCAACGGGAATGTTCAGGGTGTGGCTCAGTGCTCCGGTGATCTAAGTACATCAC 681
Query 599 AGTGCCAGGATTGTTTGTCTGATGCAATCGGACGGCTCAAATCTGATTGTGGAATGGCTC 658
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 AGTGCCAAGATTGCTTGTCTGATGCAATCGGACGGCTCAAATCTGATTGTGGAATGGCTC 741
Query 659 AGGGAGGATACGTTTACTTGTCCAAGTGTTACGCGCGTTTCAGTGTTGGTGGTAGTCACG 718
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 742 AGGGAGGATATGTTTACTTGTCGAAATGTTACGCGCGTTTCAGTGTTGGTGGTAGTCACG 801
Query 719 CGCGTCAGACCCCAGGCCCAAACTTTGGTCATGAAGGAGAGAAGGACAATAAAGATGATA 778
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 802 CGCGTCAGACCCCAGGCCCAAACTTTGGTCATGAAGGAGAGAAGGGCAATAAGGATGATA 861
Query 779 ATGGGGTCGGGAAAA-CATTGGCGATAATAATAGGAATCGTCACCTTAATCATCTTGCTC 837
|||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 ATGGAGT-GGGAAAAACATTGGCGATAATAATAGGAATCGTCACCTTAATCATCTTGCTC 920
Query 838 GTCGTGTTTCTCGCTTTTCTTGGAAAGCAATGTAGAAAATTACAAGATGAGAAATGGTGT 897
|| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 921 GTTGTGTTTCTCGCTTTTGTTGGAAAGTGTTGTAGAAAATTACAAGATGAGAAATGGTGT 980
Query 898 AAATGAGAGGAAAAAGTGGGAAACGG-ATCAATCAACAACTCGAGTAGAGCCAC--TGCT 954
|||||| |||| ||||||||||| | ||||||||||||||||||| ||||||| || |
Sbjct 981 AAATGAAAGGACAAAGTGGGAAA-GATATCAATCAACAACTCGAGTCGAGCCACACTGTT 1039
Query 955 AGTTGTATTTTTGTAATATTTTT-GTTCTCCCTCATAAGATGTACGTAGTtatagtatat 1013
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGTTGTATTTTTGTAATTTTTTTTGTTCTCCCTCATAAGATGTACGTAGTTATAGTATAT 1099
Query 1014 taatatatataatata-tatat-atatGATTGTATCTCCGAAACGATTTTTGTATAATTG 1071
| ||| || | ||||| ||| | ||||||||||||||||||| |||||||||||||||||
Sbjct 1100 TGATA-ATTTGATATAGTAT-TGATATGATTGTATCTCCGAATCGATTTTTGTATAATTG 1157
Query 1072 TCGGACTTATATAGGCCAAATCGATATCTTCTTTCTTTGACGTGAATGAAACATTCGATT 1131
|||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||||||
Sbjct 1158 TCGGACTTATATAGGCCAAAGCGATATCTTCTT-CTTTGATGTGAATGAAACCTTCGATT 1216
Query 1132 TGGTATCTT--ATAAATGCCAT-TTTTTCCGTC 1161
| |||||| ||||||||||| |||||| |||
Sbjct 1217 TCTTATCTTCTATAAATGCCATGTTTTTC-GTC 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5