BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476200
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70700.1 | Symbols: JAZ9, TIFY7 | TIFY domain/Divergent CCT ... 1458 0.0
> AT1G70700.1 | Symbols: JAZ9, TIFY7 | TIFY domain/Divergent CCT
motif family protein | chr1:26654768-26657064 FORWARD LENGTH=1247
Length=1247
Score = 1458 bits (789), Expect = 0.0
Identities = 1017/1120 (91%), Gaps = 44/1120 (4%)
Strand=Plus/Plus
Query 112 TTGAGAGTTTGTCATTG---ATTTGGTTTGCAATGGAAAGAGATTTTCTGGGTTTGAGCG 168
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TTGAGAGTTTGTCATTGAATATTTGGTTTGCAATGGAAAGAGATTTTCTGGGTTTGAGCG 211
Query 169 ACAAGCAGTATCTAAGTAATAACGTTAAGCATGAGTTTAACAACGATGATGGT-G-ATAT 226
||||||||||||||||||||||||||||||||||| ||||| | |||| | || | | |
Sbjct 212 ACAAGCAGTATCTAAGTAATAACGTTAAGCATGAGGTTAACGATGATGCT-GTCGAAGA- 269
Query 227 TTTAGGGTTGAGTACGAAGGCAGCTAGACAATTGGGGAAGGCAAAGGTTTTTGCTACTTC 286
|||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 270 ACGAGGGTTAAGTACGAAGGCAGCTAGAGAATGGGGGAAGTCAAAGGTTTTTGCTACTTC 329
Query 287 AACTTACATGCCTGCTTCAGATTTCCAGGAGGCTAAGGCGTTTCCGGTTGCATACCAGTG 346
|| || ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 330 AAGTTTCATGCCTTCTTCAGATTTCCAGGAGGCTAAGGCGTTTCCGGGTGCATACCAGTG 389
Query 347 GGGATCAGTTTCTGCGGCCAACGTTTTCCGCAGAGGCCAATTCAGCGGTGCGTTTCAGAA 406
||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||| ||
Sbjct 390 GGGATCAGTTTCTGCGGCCAATGTTTTCCGCAGATGCCAATTTGGTGGTGCGTTTCAAAA 449
Query 407 CGC-ATCGCCGCTTTTACTAGGAGGATCAGTTCCTTTACCAACTCATCCTTCTCTTGTTC 465
||| | |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 450 CGCGA-CGCCGCTTTTACTAGGCGGTTCAGTTCCTTTACCAACTCATCCTTCTCTTGTTC 508
Query 466 CACGAGTGGCTTCCTCAGGATCATCTCCTCAGCTCACTATCTTTTATGGTGGAACTGTTA 525
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | |
Sbjct 509 CACGAGTGGCTTCCTCCGGATCATCTCCTCAGCTCACAATCTTTTATGGCGGAACTATAA 568
Query 526 GCGTCTTTAATGACATATCTCCTAATAAGGCTCAAGCCATCATGTTATGCGCGGGGAACG 585
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 569 GCGTCTTTAATGACATATCTCCCGATAAGGCTCAAGCCATCATGTTATGCGCCGGGAACG 628
Query 586 GTTTGAAAGGTGAAACTGGAGAGAGTAGCTTGAAGAAACAACACCCGGTTCGCGAAGTTG 645
||||||||||||||||| | ||| | | || ||| | |||||||| |||| ||
Sbjct 629 GTTTGAAAGGTGAAACT---G-GAG-A---T--AG---CAA-A-CCGGTTCGAGAAGCTG 673
Query 646 AAAGAGTGTATGGAAAACAAATCCATAACACTTCTGCTGCTGCCTCATCAAGCTCTGCCA 705
||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 674 AAAGAATGTATGGAAAACAAATCCATAACA---CTGCTGCTACCTCATCAAGCTCTGCCA 730
Query 706 TTCACACTGATACTTACTCAAGATGTAGGGACAAC-CCCGTTGCTACGACTAATGCAATG 764
||||||||||| || |||||| ||||||||| || ||||||||| ||||||||||||||
Sbjct 731 CTCACACTGATAATTTCTCAAGGTGTAGGGAC-ACACCCGTTGCTGCGACTAATGCAATG 789
Query 765 AGCATGATCGAATCATTCAATGCAGTTCCTGGTAACATGATTCCTTCAGTATTTCCTCAA 824
||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||||
Sbjct 790 AGCATGATCGAATCATTCAATGCAGCTCCTCGTAACATGATTCCTTCAG---TCCCTCAA 846
Query 825 GCTCGGAAAGCATCCTTAGCTCGGTTCTTGGAGAAGCGCAAAGAGAGGCTTATGAGTGCA 884
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GCTCGGAAAGCATCCTTGGCTCGGTTCTTGGAGAAGCGCAAAGAGAGGCTTATGAGTGCA 906
Query 885 ATGCCATACAAGAAGATGCTTCTTGATTTGTCGACCGGAGAATCCAGTGGAATGAATTAC 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 ATGCCATACAAGAAGATGCTTCTTGATTTGTCGACCGGAGAATCCAGTGGAATGAATTAC 966
Query 945 TCTTCTACTTCTCCTACCTAAAACCTACACTTTTTATTCTTAAGGttttttttttACAAT 1004
||||||||||||||||| ||||||||||||||||| || || |||||||| |||||
Sbjct 967 TCTTCTACTTCTCCTACATAAAACCTACACTTTTT-TT-TT----TTTTTTTT--ACAAT 1018
Query 1005 GGTAATTTGTAATTTTAATCATTAGATTATGATTATATAGTTACCATTTATATTCTTACG 1064
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGTAATTTGTAATTGTAATCATTAGATTATGATTATATAGTTACCATTTATATTCTTACG 1078
Query 1065 AGCAGGAGAAGGCGTTAGGGCGTCTCTGTATTTGATCATTGTTTGTAATGCTTTGGTTTA 1124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 AGCAGGAGAAGACGTTAGGGCGTCTCTGTATTTGATCATTGTTTGTAATGCTTTGGTCTG 1138
Query 1125 TT-ATTGTAGGATTACTTTAAAACCTTAAGAACTAACAGATATATGTTTGTCATGTA-TG 1182
|| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||| | |
Sbjct 1139 TTTATTGTAGGATTACATTATAACTTTAAGAACTAACAGATATATGTTTGTCATGGACTC 1198
Query 1183 -TCGACTGTCGAGAATTTAAGATCGAATAAAATTCACTAT 1221
| | ||||| ||||||||| ||| |||||||||||||||
Sbjct 1199 AT-GTCTGTCAAGAATTTAATATCAAATAAAATTCACTAT 1237
Score = 167 bits (90), Expect = 3e-40
Identities = 97/100 (97%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 1 GCAAAGAGTTAAATAGGCCTCTCCAAAAGTGTGTCTGTAACATTACCAAAACGAAACCTT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCAAAGAGTTAAATAAGCCTCTCCAAAAGTGTGTCTGTAACATTACCAAAACGAAACCTT 60
Query 61 CCTTGTGGATTCCCACTTCTTTCTTCTGTGTTT-TTCTTC 99
||||||||||||||||||||||||||||| ||| ||||||
Sbjct 61 CCTTGTGGATTCCCACTTCTTTCTTCTGT-TTTCTTCTTC 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5