BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476202
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70720.1 | Symbols: | Plant invertase/pectin methylesterase... 939 0.0
> AT1G70720.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:26666408-26667204 FORWARD
LENGTH=797
Length=797
Score = 939 bits (508), Expect = 0.0
Identities = 597/640 (93%), Gaps = 6/640 (1%)
Strand=Plus/Plus
Query 1 TAACAATGATGAGATCTATTCTCCTTATACTTCT-TTTATCCTCCCTTCTTCCACCAATC 59
|||||||||||||| ||| ||||||||||||||| ||| ||| || |||| |||| ||||
Sbjct 24 TAACAATGATGAGACCTACTCTCCTTATACTTCTCTTT-TCCACCTTTCTCCCACAAATC 82
Query 60 CTCACCGTTGATCCCCCACTCCCATCATCCAACGGCTCCGATTTCATCCGTACAGCCTGC 119
|||||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 83 CTCACCGTTGATCCACCACTCCTACCATCCAACGGCTCCGATTTCATCCGTTTGGCCTGC 142
Query 120 AACACCACACTCTACCCGGACCTTTGCTTCTCCACTCTCTCCTCTTTTGCCAACTCCATC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AACACCACACTCTACCCGGACCTTTGCTTCTCCACTCTCTCCTCTTTTGCCAACTCCATC 202
Query 180 CAAAATGACTCGAACCGCCTCGCACGCGTAGCCATCTCCCTCACTCTCCACAACACTCTC 239
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 203 CAAAATGACTCAAACCGCCTCGCGCGCGTAGCCATCTCCCTCACTCTCCACAACACTCTC 262
Query 240 CCCCTTCTCTCTTACCTCCAAAACGCTTATAACCGCGACCACCCAACCCCCGTCCTTAGA 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 CACCTTCTCTCTTACCTCCAAAACGCTTATAACCGCGACCACCCAACCCCCGTCCTTAGA 322
Query 300 GACTGCTTCGAGAATCTTAAAGATGCCGTCGACGATATGAGAGGCTCGATGAAACAGATG 359
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 323 GACTGCTTCGAGAATCTTAAAGATGCCGTTGACGGTATGAGAGGCTCCATGAAACAGATG 382
Query 360 AAGGAGCTTGTCTCCGCGTCTGGCTCGGTCGAGTCTTTTAGGTTCCAGATGAGCAATGTC 419
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 383 AAGGAGCTTGTCTCCGCGTCTGGCTCGATCGAGTCATTTAGGTTCCAGATGAGTAATGTC 442
Query 420 AAGACTTGGCTTAGCGCAGCCCTCACTAACGAGTATACTTGTACGGACGGATTCAAAGAC 479
|||||||||||||| ||||| || ||| | |||||||||||||||||||| |||||||||
Sbjct 443 AAGACTTGGCTTAGTGCAGCTCTTACTGATGAGTATACTTGTACGGACGGGTTCAAAGAC 502
Query 480 GTCCACGAAGACGGCTCCATCAAAGATGACGTCTGCTCTCGAGTCGATGTCGTCAAGAAG 539
||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 503 GTCCACGAAGACGACTCTATCAAAGATGACGTCTGCTCTCGAGTCGATGACGTCAAGAAG 562
Query 540 CTGACTAGCAATGCGCTCGCTTTAGTTAACCGCTATGCCGACGAGTCAGTAATACATTAA 599
|| |||||||||||||| |||||||||||||||||||||||||||||| ||||| | |
Sbjct 563 CTTACTAGCAATGCGCTGGCTTTAGTTAACCGCTATGCCGACGAGTCAATAATA-A--A- 618
Query 600 TTAATAATATCTTAGTCATTGATCGTTCGAGTCTTTCGTT 639
|||||||||||| |||||| |||| ||||||||||| |||
Sbjct 619 TTAATAATATCTCAGTCATCGATCCTTCGAGTCTTTTGTT 658
Score = 113 bits (61), Expect = 2e-24
Identities = 78/85 (92%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 635 TCGTTGTTGCATGTAATACTGAAACA-ATATGTGAGTTTTCCTTGGTTGTTATTATTATT 693
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct 718 TCGTTGTTGCATGTAATACTGAAA-ATATATGTGAGTTTTCCTTGGA----ATTATTATT 772
Query 694 TACTTGGATTTATTTCAGTTTTTGC 718
|||||||||||||||||||||||||
Sbjct 773 TACTTGGATTTATTTCAGTTTTTGC 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5