BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476205
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70740.1 | Symbols: | Protein kinase superfamily protein | ... 2135 0.0
> AT1G70740.1 | Symbols: | Protein kinase superfamily protein
| chr1:26673632-26675947 REVERSE LENGTH=1753
Length=1753
Score = 2135 bits (1156), Expect = 0.0
Identities = 1281/1341 (96%), Gaps = 9/1341 (1%)
Strand=Plus/Plus
Query 386 AGTTTTCCCATTTCAAGTTTTAGTTTCCGCTACTAAAGATTTTCACCCGACCCATAAACT 445
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 404 AGTTTTCCCATTTCAAGTTTTAGTTTCCGCTACCAAAGATTTTCACCCGACCCATAAACT 463
Query 446 CGGTGAAGGTGGATTT-GGTCCCGTCTTTAAGGGAAGATTACCTGACGGGAGAGACATAG 504
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 464 CGGTGAAGGTGG-TTTCGGTCCCGTCTTCAAGGGAAGATTACCTGACGGGAGAGACATAG 522
Query 505 CAGTGAAGAAGCTATCACAGGTTTCAAGGCAAGGTAAAAACGAGTTTGTTAACGAGGCTA 564
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 523 CAGTGAAGAAGCTATCTCAGGTTTCAAGGCAAGGCAAAAACGAGTTTGTGAACGAGGCTA 582
Query 565 AGTTGTTGGCTAAAGTTCAGCATCGCAATGTTGTTAATCTTTGGGGTTATTGTACACATG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AGTTGTTGGCTAAAGTTCAGCATCGCAATGTTGTTAATCTTTGGGGTTATTGTACACATG 642
Query 625 GAGATGATAAACTCTTGGTCTATGAGTATGTCGTAAACGAGAGCCTCGACAAGGTCCTAT 684
|||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct 643 GAGATGATAAGCTCTTGGTTTATGAGTATGTCGTTAATGAGAGCCTCGACAAGGTCCTCT 702
Query 685 TCAAATCCAACAGAAAATCGGAGATAGATTGGAAGCAGAGGTTTGAGATAATAACAGGCA 744
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 703 TCAAATCCAACAGAAAATCGGAGATAGATTGGAAGCAGAGGTTTGAGATCATAACAGGCA 762
Query 745 TTGCTCGAGGACTGCTCTATCTACATGAAGACGCACCAAACTGCATCATCCACAGGGACA 804
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 763 TTGCTCGAGGACTGCTCTATCTACATGAAGACGCGCCAAACTGCATCATCCACAGGGATA 822
Query 805 TTAAGGCTGGTAATATTTTGTTGGATGAAAAATGGGTTCCTAAGATTGCTGATTTTGGGA 864
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 823 TTAAGGCTGGCAATATTTTGCTGGATGAAAAATGGGTTCCTAAGATTGCAGATTTTGGGA 882
Query 865 TGGCTAGACTCTATCAGGAAGATGTAACACATGTCAACACTCGTGTTGCAGGAACCAATG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TGGCTAGACTCTATCAGGAAGATGTAACACATGTCAACACTCGTGTTGCAGGAACCAATG 942
Query 925 GTTATATGGCGCCAGAGTACGTAATGCACGGGGTTCTGTCGGTAAAGGCAGACGTATTCA 984
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 943 GTTATATGGCGCCAGAGTACGTAATGCACGGGGTTCTATCGGTAAAGGCAGACGTATTCA 1002
Query 985 GCTTTGGGGTTTTGGTTCTGGAGCTCGTAAGTGGACAGAAGAACTCGAGTTTTAGTATGA 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1003 GCTTTGGGGTTTTGGTTCTGGAGCTCGTAAGTGGACAGAAGAACTCGAGTTTTAGCATGA 1062
Query 1045 GACACCCTGACCAGACTCTTCTTGAATGGGCATATAAGTTGTACAAGAAAGGCAGGACCA 1104
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1063 GACACCCTGACCAGACTCTTCTTGAATGGGCATTTAAGTTGTACAAGAAAGGCCGGACCA 1122
Query 1105 TGGAGATACTAGACCCAGATATAGCATCTTCAGCTGATCCGGATCAAGTCAAACTTTGCG 1164
||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| || |
Sbjct 1123 TGGAGATACTAGACCAAGATATAGCAGCTTCAGCTGATCCAGATCAAGTCAAACTCTGTG 1182
Query 1165 TACAGATCGGACTACTCTGCGTTCAAGGCGATCCGCATCAAAGACCGTCCATGAGACGAG 1224
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1183 TACAGATCGGACTACTCTGCGTTCAAGGCGATCCGCATCAAAGACCGAGCATGAGACGGG 1242
Query 1225 TATCTCTACTTCTCTCGAGAAAACCGGGACATCTAGAAGAACCGGATCATCCTGGTGTCC 1284
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1243 TATCTCTACTTCTCTCTAGAAAACCAGGACATCTAGAAGAACCGGATCATCCTGGTGTCC 1302
Query 1285 CTGGATCTAGATACCGTCGTCGAACACATCGTCCTTCAGGAGCAGCATCACTTGGAACAT 1344
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1303 CGGGATCTAGATACCGTCGGCGAACACAACGTCCTTCAGGAGCAGCATCACTTGGAACAT 1362
Query 1345 TGTCGACCACTGGTTCCAGTACAGATTCTTTCGGTTCGAACTTGAACACAAACACCGGAA 1404
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 1363 TGTCGACCACTGGTTCCAGCACAGATTCTTTCGGTTCAAACCTGAACACAAACACGGGAA 1422
Query 1405 CCGGTGGTAGAGTTACCCCCGCATCTTCTAAAACTTCGACTCGGAGTAATGCCACTAGAA 1464
| |||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1423 CTGGTGTTAGAGGTACCCCCGCATCTTCTAAAGCTTCAACTCGGAGTAATGCCACTAGAA 1482
Query 1465 GTGCTGGTCAGAGCTCTAGCTCAGATCCTCACGGGAAACGACCA-ATGAGTTATTGAAGT 1523
||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 1483 GTGCTGGTCAGAGCTCTAGCTCAGACCCTCACGGGAAACGAC-ATATGAGTTATTGAAGT 1541
Query 1524 ACATAAAATCTGGTCACAGGTGATTGTAAATAGCGAGCTGCATATATAATATTTGGTTCA 1583
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1542 ACATAAAATCTGGTCATAGGTGATTGTAAATAGCGAGCTGCATATATAATATTTGTTTCA 1601
Query 1584 CAATTTATTTATTTTTGCTTTTGAAAAGTAAATTAATTT-TGTTTT-GACTGCTGTAGTG 1641
|||||||||| ||||||||||||||||||||||||||| | |||| |||||| ||||||
Sbjct 1602 TAATTTATTTAATTTTGCTTTTGAAAAGTAAATTAATTTATTTTTTTGACTGCAGTAGTG 1661
Query 1642 ATTTAGTTTTGTAGTATGATTTGTTATATTTAGAGGAAAAAAGAATTATGATTCATTTGT 1701
|||||||||||||||||||||||||||||| || || ||||| | |||||||||||||||
Sbjct 1662 ATTTAGTTTTGTAGTATGATTTGTTATATT-AGCGGGAAAAA-A-TTATGATTCATTTGT 1718
Query 1702 TACATTTGTATATTAGAATAA 1722
|||||||||||||||||||||
Sbjct 1719 TACATTTGTATATTAGAATAA 1739
Score = 335 bits (181), Expect = 9e-91
Identities = 329/393 (84%), Gaps = 39/393 (10%)
Strand=Plus/Plus
Query 1 ACTTTCGTCTCTAATCTAAATCCTTCCTCGCATAAACTCTTCCTTGAATCAACAAAATTC 60
|||||||| || ||||||||||||||||||||||||||||||| |||||| | |||| |
Sbjct 1 ACTTTCGTTTCAAATCTAAATCCTTCCTCGCATAAACTCTTCCCTGAATC-A-AAAA--C 56
Query 61 ATTCTC-TTCTAGTAAAAACAAAGACAATCACAAACACGcttcttcttcttcttcttctt 119
| | ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct 57 ---C-CATTCTAATAAAAACAAAGACGATCTCAAACACG---------CTTCTTCTTCTT 103
Query 120 cctcttcgtcttcCTCAATCATCCCTAAGACCGACATAACCTGACTTTAACCCAATCTAA 179
| | || |||||||||||||||||||| || | |||| |||| ||||||||| ||
Sbjct 104 -C-C-TC--ATTCCTCAATCATCCCTAAGA-CG---TCACCTCACTTAAACCCAATCCAA 154
Query 180 CGCCGCCGAATCAAAATC-CCTTCAAATCCACTTCTTCCCCAATTCAATTCTACTTTCTG 238
|||||||||| ||||||| |||| | | ||||||||||||||||| ||||||||||
Sbjct 155 CGCCGCCGAACCAAAATCAACTTC---TTCGGTTCTTCCCCAATTCAATACTACTTTCTG 211
Query 239 GGTCGTCGTTTAAATTTTCTAAA--TCTCTCTGTT-ATAGCTTTTCCATGGGATGGTCAC 295
|||||||| ||||| | ||||| |||||||||| || | || |||||||||||||||
Sbjct 212 GGTCGTCG-TTAAA-TCCCTAAATCTCTCTCTGTTGTTA-CCTTCCCATGGGATGGTCAC 268
Query 296 TAAGAATTCTCAAAAGAGCAACT-TGGGCATGACAAAGTCCATGAATTTCTTTCAGAATA 354
|||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 269 TAAGAACTCTCATAAGAGCAA-TCTGGGCATGACAAAGTCCATGAATTTCTTTCAGAACA 327
Query 355 TCATTAAACCTTTCAAACGCAGCTCCAATCGAG 387
|||||||||||||||||||||||||||||||||
Sbjct 328 TCATTAAACCTTTCAAACGCAGCTCCAATCGAG 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5