BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476210
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70790.2 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1435 0.0
> AT1G70790.2 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:26700412-26702342 FORWARD LENGTH=872
Length=872
Score = 1435 bits (777), Expect = 0.0
Identities = 833/859 (97%), Gaps = 7/859 (1%)
Strand=Plus/Plus
Query 1 CGGTTGTCCGTAAACAACGGATAGATCTGTCGATGTTTGTTTTTGGAACTCCGCGTTGAA 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 CGGTTGTCCGCAAACAACGGATAGATCTGTCGATGTTTGTTTTTGGAACTCCGCGTTGAA 79
Query 61 TCAGCGTCGATGTTTCTCCAATGGAAGATAAACCATTAGGGATTCTCAGAGTTCATGTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 80 TCAGCGTCGATGTTTCTCCAATGGAAGATAAACCATTAGGGATTCTCAGGGTTCATGTCA 139
Query 121 AACGAGGGATTAATCTTGCTATTCGTGATGCCACCACCAGTGATCCTTATGTTGTTATCA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 AAAGAGGGATTAATCTTGCTATTCGTGATGCCACCACCAGTGATCCTTATGTTGTTATCA 199
Query 181 CATTGGCTAATCAGAAACTGAAGACGCGTGTGATTAATAATAACTGTAATCCAGTGTGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CATTGGCTAATCAGAAACTGAAGACGCGTGTGATTAATAATAACTGTAATCCAGTGTGGA 259
Query 241 ATGAACAACTGACCCTTTCCATCAAAGATGTGAATGATCCAATCCGTCTGACGGTGTTTG 300
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 260 ACGAACAACTGACCCTTTCCATCAAAGATGTGAATGATCCTATCCGTCTGACGGTGTTTG 319
Query 301 ATAAAGACAGATTCTCGGGAGATGACAAAATGGGTGATGCAGAAATAGACTTTAGGCCGT 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ATAAAGATAGATTCTCGGGAGATGACAAAATGGGTGATGCAGAAATAGACTTTAGGCCGT 379
Query 361 TCCTAGAAGCGCATCAGATGGAGTTAGATTTCCAGAAGCTCCCCAATGGTTGTGCAATCA 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCCTAGAAGCGCATCAAATGGAGTTAGATTTCCAGAAGCTCCCCAATGGTTGTGCAATCA 439
Query 421 AGAGGATCCGTCCAGGCAGGACCAACTGTTTGGCTGAAGAGAGCAGCATCACTTGGAGCA 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 440 AGAGGATCCGTCCAGGCAGGACCAACTGTTTAGCTGAAGAGAGCAGCATCACTTGGAGCA 499
Query 481 ATGGGAAGATCAAACAAGAGATGATTCTTAGACTAAAGAATGTTGAGTGTGGGGAAGTAG 540
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 500 ATGGGAAGATCATGCAAGAGATGATTCTTAGACTAAAGAATGTGGAGTGTGGGGAAGTAG 559
Query 541 AGATCATGCTTGAGTGGACCGACGGTCCAGGCTGCAAGGGTCTTGGACGCGAAGGATCCA 600
|| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 560 AGCTCATGCTTGAGTGGACTGATGGTCCAGGCTGCAAGGGTCTGGGACGCGAAGGATCCA 619
Query 601 AGAAGACACCATGGATGCCGACAAAACGATTGGACTAAGATGCAGAAATGTTAAAACAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AGAAGACACCATGGATGCCGACAAAACGATTGGACTAAGATGCAGAAATGTTAAAACAGA 679
Query 661 GACCGTGAAGATGTGATGGTATTTTTTCTTTCTGTTCATGGAAAGATAAAGACGAGTTTG 720
|||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 680 GACCGTGAAGATGTGATGGTATTTTTTCGTTATGTTCATGGAAAGA------CGAGTTTG 733
Query 721 TCTTTGTCTCATCAGAGTTTAAATTGATAAAAA-GGCTCTGCTTTGGTCTTTAGTTGTAC 779
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 734 TCTTTGTCTCATCAGAGTTTAAATTGACAAAAAAGGCTCTGCTTTGGTCTTTAGTTGTAC 793
Query 780 ATGTCGAATAACTCAACCCTTATATATATTGTATCTGTTTCTACTAACTGAAGAAATAAA 839
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 794 ATGTCGAATAACTCAACCCTTATATATATTGTATCTGTTTCTACTAATTGAAGAAATAAA 853
Query 840 GCAAACCCTGAATTTCTAG 858
|||||||||||||||||||
Sbjct 854 GCAAACCCTGAATTTCTAG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5