BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476213
Length=2149
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70820.1 | Symbols: | phosphoglucomutase, putative / glucos... 3469 0.0
> AT1G70820.1 | Symbols: | phosphoglucomutase, putative / glucose
phosphomutase, putative | chr1:26705518-26708264 FORWARD
LENGTH=2154
Length=2154
Score = 3469 bits (1878), Expect = 0.0
Identities = 2067/2158 (96%), Gaps = 13/2158 (1%)
Strand=Plus/Plus
Query 1 ATATTTG-TTTCTTTTATTTGGATCTCTGCCTTCAAGTCTGAAACTTAGAACTCTGTTTT 59
||||||| |||| ||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1 ATATTTGTTTTC-TTTCTTTGGATCTCTGCTTTCAAGTCTGAAACTT-GAACTCTGTTTC 58
Query 60 TAATTTACTTCAAAAGCTATGGCGTCGGCTTCAACATCATCTTTAATGGCTTCTAAAACT 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 59 TAATTTACTTCAAAAGCTATGGCGTCGACTTCAACATCATCTTTAATGGCTTCTAAAACT 118
Query 120 GTAATCTCCAAAACAGCTCTGTTTTCTTCCTTACCGGGAATAGTCAACCGGAGTTTTTTA 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 119 GTAATCTCCAAAACAGCTCTGTTTTCTTCCTTACCGGGAATAGTCAGCCGGAGTTTTTTA 178
Query 180 ACATTGGCACCAGTTTCTCCTTCCGTTAAACCCCTGAGGACAAGATCTTCAAGTGTTACT 239
||||| ||||| | ||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 179 ACATTCGCACCGGCTTCTCCTTCCGTTAAACCCCTTAGGATAAGATCTTCAAATGTTACT 238
Query 240 AAGTTCGATGAAGTAACCAACAGTCTTGACGAAGATATGGACCAGATTCGACGGTTGCAA 299
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 239 AAGTTCGATGAAGTAACCAACAGTCTTGACGAAGACATGGACCAGATTCGACGGTTACAA 298
Query 300 AACGGTTCTGACGTGAGAGGAGTCGCATTGGAAGGAGAGAAAGGTCGAACGGTTGACCTA 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 299 AACGGTTCTGACGTGAGAGGAGTCGCATTGGAAGGAGAGAAAGGTCGAACAGTTGACCTA 358
Query 360 ACGCCTGCAGCTGTTGAAGCAATCGCAGAGAGCTTTGGAGAATGGGTTGCAGCAACGGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACGCCTGCAGCTGTTGAAGCAATCGCAGAGAGCTTTGGAGAATGGGTTGCAGCAACGGAG 418
Query 420 AGTAACGGAAATGGCGTCCTTAAGGTTTCTCTCGGACGGGATCCACGTGTTTCCGGTGGG 479
||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 AGTAACGGAAACGGCGTCATTAAGATTTCTCTCGGACGGGATCCACGTGTTTCCGGTGGG 478
Query 480 AAGCTAAGCACGGCGGTGTTTGCCGGTTTAGCTCGTGCAGGTTGTTTAGCTTTTGACATG 539
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 479 AAGCTAAGCACGGCAGTGTTTGCCGGCTTAGCTCGTGCAGGCTGTTTAGCTTTTGACATG 538
Query 540 GGTTTAGCTACTACTCCAGCTTGCTTCATGAGCACGTTACTCTCTCCATTCGAATACGAC 599
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGTTTAGCTACAACGCCAGCTTGCTTCATGAGCACGTTACTCTCTCCATTCGAATACGAC 598
Query 600 GCTTCAATTATGATGACAGCTTCTCATTTACCGTATACAAGAAACGGACTCAAGTTCTTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCTTCAATTATGATGACAGCTTCTCATTTACCGTATACAAGAAACGGACTCAAGTTCTTT 658
Query 660 ACCAAGAGAGGAGGATTAACGTCTCCTGAAGTGGAGAAGATATGCGATTTAGCTGCGCGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACCAAGAGAGGAGGATTAACGTCTCCTGAAGTGGAGAAGATATGCGATTTAGCTGCGCGA 718
Query 720 AAGTACTCTACTAGGCAGAATAAAGTCTCTACATTGATCAGAATGCGACCTAAGCAAGTT 779
|||||| |||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 719 AAGTACGCTACTAGGCAGACTAAAGTCTCTACATTGATCAGAACGCGACCGCAGCAAGTT 778
Query 780 GATTTCATGAGCGCTTACTCTAAGCACCTTAGAGAAATCATTAAAGAGAGAATAAATCAC 839
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 GATTTTATGAGCGCTTACTCTAAGCACCTTAGAGAAATCATTAAAGAGAGAATCAATCAC 838
Query 840 CCTGAACACTACGACACTCCGCTCAAAGGATTTCAGATAGTTGTGAATGCTGGTAATGGG 899
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 839 CCTGAACACTATGACACTCCTCTCAAAGGATTTCAGATAGTTGTGAATGCGGGTAATGGG 898
Query 900 TCAGGAGGGTTCTTTACGTGGGACGTTCTAGACAAGTTAGGAGCCGATACATTCGGTTCG 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCAGGAGGCTTCTTTACGTGGGACGTTCTAGACAAGTTAGGAGCCGATACATTCGGTTCG 958
Query 960 CTCTATCTAAACCCAGACGGGATGTTCCCCAATCACATTCCTAATCCGGAAAACAAAATC 1019
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 CTCTATCTAAACCCTGACGGGATGTTCCCTAATCACATTCCTAATCCGGAAAACAAAATC 1018
Query 1020 GCAATGTCA-CACACCCGAGCCGCGGTTCTTGAAAACTCAGCGGATCTCGGGGTTGTGTT 1078
|||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1019 GCAATG-CAACACACCCGAGCCGCGGTTCTTGAGAACTCAGCAGATCTCGGGGTTGTGTT 1077
Query 1079 TGACACGGATGTTGACAGGAGTGGAGTGGTGGATAACAGAGGAAATCCTATAAATGGAGA 1138
||| |||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1078 TGATACGGATGTTGACAGGAGTGGAGTGGTGGATAACAAAGGAAATCCTATCAACGGAGA 1137
Query 1139 TAAGCTCATTGCGCTGATGTCAGCTATAGTGCTTAAAGAACATCCAGGAAGTACAATAGT 1198
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1138 TAAGCTTATTGCGCTTATGTCAGCTATAGTGCTTAAAGAACATCCAGGAAGTACAGTAGT 1197
Query 1199 GACTGACGCAAGAACGAGTATGGGGCTAACTAGGTTTATAACGGAGCGAGGAGGGAGGCA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GACTGACGCAAGAACGAGTATGGGGCTAACTAGGTTTATAACGGAGCGAGGAGGGAGGCA 1257
Query 1259 TTGTTTGTACAGAGTAGGCTATAGAAACGTGATTGACAAGGGAGTAGAGCTGAACAAAGA 1318
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTGTTTGTATAGAGTAGGGTATAGAAACGTGATTGACAAGGGAGTAGAGCTGAACAAAGA 1317
Query 1319 CGGCATCGAGACTCATCTCATGATGGAAACTTCAGGACATGGTGCTGTTAAGGAGAATCA 1378
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1318 CGGCATCGAGACTCATCTCATGATGGAAACTTCAGGACATGGTGCGGTTAAGGAGAATCA 1377
Query 1379 CTTCTTGGATGATGGTGCATACATGGTGGTGAAGATCATAATTGAAATGGTGAGAATGAG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTTCTTGGATGATGGTGCATACATGGTGGTGAAGATCATAATTGAAATGGTGAGAATGAG 1437
Query 1439 ACTCGCGGGATCAAATGAAGGTATCGGTAGTCTGATCGAAGATCTTGAGGAGCCGTTAGA 1498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1438 ACTCGCGGGATCAAATGAAGGTATCGGTAGTTTGATCGAAGATCTTGAGGAGCCGTTAGA 1497
Query 1499 AGCGGTTGAGCTGCGGTTGAATATTTTATCAGAGCCAAAAGATGCCAAAGCAAAAGGCAT 1558
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1498 AGCGGTTGAGCTTCGGTTGAATATTTTATCAGAGCCAAGAGATGCCAAAGCAAAAGGCAT 1557
Query 1559 TGAAGCCATTGAGACTTTCAGACAATACATCGAGGAAGGAAAACTGAGAGGGTGGGAATT 1618
||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 1558 TGAAGCCATTGAGACTTTCAGGCAATACATTGAGGAAGGAAAACTGAAAGGGTGGGAATT 1617
Query 1619 AGGCACGTGTGGGGATTGTTGGGTGAGTGAAGGTTGCTTGGTGGACTCAAATGATCATCC 1678
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1618 AGGCACGTGTGGGGATTGTTGGGTTACTGAAGGTTGCTTGGTGGACTCAAATGATCATCC 1677
Query 1679 ATCTGCCATTGATGCTCACATGTACAGGGCAAGAGTGAGTGATGAAGAGAGTGGGGAAGA 1738
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATCTGCTATTGATGCTCACATGTACAGGGCAAGAGTGAGTGATGAAGAGAGTGGGGAAGA 1737
Query 1739 GTATGGTTGGGTGCATATGAGGCAGAGTATTCATAACCCTAACATCGCACTTAATATGCA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GTATGGTTGGGTGCATATGAGGCAGAGTATTCATAACCCTAACATCGCACTTAATATGCA 1797
Query 1799 ATCAATGCTTCCTGGTGGATGTCTCTCCATGACAAGAGTCTTCAGAGACCAGTTTCTTGA 1858
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1798 ATCAATGCTTCCTGGTGGATGTCTCTCCATGACAAGAATCTTCAGAGACCAGTTTCTTGA 1857
Query 1859 AGCTAGTGGGATTGCTAGATTCCTGGATATAAGTGACTTCGACAATTACATCGGAGGACA 1918
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1858 AGCTAGTGGGGTGGCTAGATTCCTGGATATAAGTGACTTCGACAATTACATCGGAGGTCA 1917
Query 1919 ATCTTGAAGGTTCTTAATTAAATGTGAAATTTGTAATTAAAACACAACATGAATTCTTAA 1978
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1918 ATCTTGAAGGTTCTTAATTAAATGTGAAATTTGTAATTAAACCACAACATGAATTCTTAT 1977
Query 1979 G--TT--ATATGTAAATAAAGttttttttttACCAGGTTTCAGTCTTTCTCGTTCTAAGT 2034
| || ||||||||||||| | | ||||||||||||||||||||||||||||| |||||
Sbjct 1978 GCATTGTATATGTAAATAAACTATATTTTTTACCAGGTTTCAGTCTTTCTCGTTTTAAGT 2037
Query 2035 CTTGCTTATGACTATGAATTATACAGTAAAATTATTGAGGA-TCATGAGATATTTAGGGG 2093
|| ||||||||||||||||||| ||| |||| |||| ||| |||||||||||||| | |
Sbjct 2038 CTCGCTTATGACTATGAATTATGTAGTTAAATCATTG-GGAATCATGAGATATTTAAGCG 2096
Query 2094 ATTGTA--CCCAGTCAGAAAGCTCTTTTCTAGATATAAACGTTTTGGTGAAATTGTTG 2149
||||| ||| |||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 2097 ATTGTCGGCCCGGTCAGAAAACTCTTTTCTAGAAATAAATGTTTTGGTGAAATTGTTG 2154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106575757035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5