BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476218
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70840.1 | Symbols: MLP31 | MLP-like protein 31 | chr1:26712... 1088 0.0
AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725... 326 2e-88
> AT1G70840.1 | Symbols: MLP31 | MLP-like protein 31 | chr1:26712982-26714066
REVERSE LENGTH=756
Length=756
Score = 1088 bits (589), Expect = 0.0
Identities = 662/697 (95%), Gaps = 5/697 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaTGGCGACTAAAATGGCCGGGGCTGCAATGAATCCAGCAAAGAGAGAGGCCTCA 60
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||
Sbjct 47 AAAAAAATGGCGACTAAAATGGCCGGGGCAGCAATGAATTTAGCAAAGAGAGAGTCGTCA 106
Query 61 AGTTTGTGTGGGAAGCTAGAGACAGATGTTGAAATCAAAGCTTCAGCTGGGAAGTTCCAT 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 107 AGTTTGTGTGGGAAGCTAGAGACAGATATTGAAATCAAAGCTTCAGCTGGGAAGTTCCAT 166
Query 121 CACATGTTTGCTGGGAGACCACACCATGTCTCCAAAGCAACTCCAGGGAAAATTCAGGGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CACATGTTTGCTGGGAGACCACACCATGTCTCCAAAGCAACTCCAGGGAAAATTCAGGGT 226
Query 181 TGTGAGCTTCATGAAGGCGAATGGGGCAAAGTCGGCTCTATAGTCTTCTGGAATTATGTT 240
|||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 227 TGTGAGCTGCATGAAGGTGACTGGGGCAAAGTCGGCTCTATCGTCTTCTGGAATTATGTT 286
Query 241 CATGATGGAGAGGCAAAGGTGGCAAAAGAGAGGATTGAGGCAGTGGAGCCGGAGAAAAAC 300
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 287 CATGATGGAGAGGCAAAGGTGGCAAAAGAAAGGATCGAGGCAGTGGAGCCGGAGAAAAAC 346
Query 301 CTCATCACTTTTAGGGTGATAGAGGGAGACTTATTAAAAGAGTATAAGAGCTTTGTGATC 360
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 347 CTGATCACTTTTAGGGTGATAGAGGGAGACTTATTAAAAGAGTATAAAAGCTTTGTGATC 406
Query 361 ACAATCCAAGTGACTCTTAAAAGAGGAGGACCTGGGAGTGTGGTGCACTGGCACGTCGAG 420
|||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 407 ACAATCCAAGTGACCCCTAAGAGAGGAGGACCTGGGAGTGTGGTGCACTGGCACGTCGAG 466
Query 421 TATGAGAAAATTGACGACAAAGTGGCTCACCCTGAGACCTTCCTTGATTTCTGTGTCCAA 480
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 467 TATGAGAAAATTGACGACAAAGTGGCCCACCCTGAGACCTTTCTTGATTTCTGTGTGGAA 526
Query 481 GTCTCCAAAGAGATCGATGAACATCTCCTGAACGAGGAATAGAGAGTACTCTTTAATTGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GTCTCCAAAGAGATCGATGAACATCTCCTGAACGAGGAATAGAGAGTACTCTTTAATTGA 586
Query 541 GTATCTATCCAATAATGTGTATATGTCA-GTTATGAAGCACGCATGTTCTTGTGTATGAT 599
||||||||| | || ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 587 GTATCTATC-A-TA-TGTGTATATGT-ATGTTATGAAGCACGCATGTTCTTGTGTATGAT 642
Query 600 ACAATAAACAAGGAGCGTAGCCCAATATATGTGAGTGATATAGAAAAGAGTTGTACTCTA 659
||||||||||||||| || ||||||||||||||||||||| | ||||| ||||||||||
Sbjct 643 ACAATAAACAAGGAGAGTTGCCCAATATATGTGAGTGATACATAAAAGCTTTGTACTCTA 702
Query 660 GATGTGTGTATGTCATGTTTGGTTTTAATAAAAGCTT 696
||||| ||||||||||||||||||||||||||||||
Sbjct 703 AATGTGAGTATGTCATGTTTGGTTTTAATAAAAGCTT 739
> AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725626-26726544
REVERSE LENGTH=818
Length=818
Score = 326 bits (176), Expect = 2e-88
Identities = 386/485 (80%), Gaps = 24/485 (5%)
Strand=Plus/Plus
Query 51 AGAGGCCTCAAGTTT-GTGTGGGAAGCTAGAGACAGATGTTGAAATCAAAGCTTCAGCTG 109
||| || || ||||| ||| ||||| || |||||||| || || ||||||||||| ||
Sbjct 61 AGAAGCGTCTAGTTTGGTG-GGGAAACTTGAGACAGAAGTGGAGATCAAAGCTTCGGCCA 119
Query 110 GGAAGTTCCATCACATGTTTGCTGGGAGACCACACCATGTCTCCAAAGCAACTCCAGGGA 169
|||||||||||||||||| | | |||||||||||||||||||||||||||||||| |
Sbjct 120 AAAAGTTCCATCACATGTTTACCGAGAGACCACACCATGTCTCCAAAGCAACTCCAGATA 179
Query 170 AAATTCAGGGCTGTGAGCTTCATGAAGGCGAATGGGGCAAAGTCGGCTCTATAGTCTTCT 229
||||||| || |||||||| || |||||||| |||||||||||||||||||| ||| |||
Sbjct 180 AAATTCATGGATGTGAGCTGCACGAAGGCGACTGGGGCAAAGTCGGCTCTATCGTCATCT 239
Query 230 GGAATTATGTTCATGATGGAGAGGCAA-AG-GTGGCAA-AAGAGAGGATTGAGGCAGTGG 286
|||| || |||||||||||| || || || | || || || | || || ||||| ||||
Sbjct 240 GGAAATACGTTCATGATGGAAAGTTAACAGTGGGG-AAGAATA-AG-ATCGAGGCGGTGG 296
Query 287 AGCCGGAGAAAAACCTCATCACTTTTAGGGTGATAGAGGGAGA-CTTATTAAAAGAGTAT 345
| |||||||| ||||| ||||| || | ||| |||| || || || || || |||||
Sbjct 297 ATCCGGAGAAGAACCTGATCACGTTCAAGGTTTTAGAAGGTGATCTGATGAAT-GAGTAC 355
Query 346 AAGAGCTTTGTGATC-ACAATCCAAGTGACTCTTAA--AAGAGGAGGACCTGGGAGTGTG 402
|||||||| | || ||| |||||||||| | ||| ||| |||| | |||||| |
Sbjct 356 AAGAGCTTCGC-ATTTACACTCCAAGTGACCCCTAAGCAAGGGGAGT-CA-GGGAGTATT 412
Query 403 GTGCACTGGCACGTCGAGTATGAGAAAATT-GACGACAAAGTGGCTCA-CCCTGAGACC- 459
| |||||||||| | ||||||||||||||| | ||| | || ||||| ||| || |||
Sbjct 413 GCGCACTGGCACCTGGAGTATGAGAAAATTAG-CGAGGAGGTAGCTCATCCC-GAAACCC 470
Query 460 TTCCTTGATTTCTGTGTCCA-AGTCTCCAAAGAGATCGATGAACATCTCCTGAACGAGGA 518
||| | | ||||||||| | | |||||||||||||||| ||||||||| || ||||||
Sbjct 471 TTC-TCCAATTCTGTGTCGAGA-TCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGA 528
Query 519 ATAGA 523
|||||
Sbjct 529 ATAGA 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5