BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476223
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70880.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 811 0.0
AT1G70860.2 | Symbols: | Polyketide cyclase/dehydrase and lipi... 483 1e-135
> AT1G70880.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:26722881-26723778 REVERSE
LENGTH=746
Length=746
Score = 811 bits (439), Expect = 0.0
Identities = 511/545 (94%), Gaps = 7/545 (1%)
Strand=Plus/Plus
Query 1 CCATTCACTCTCAAAAACTCGAAACACTTAGAGACATTAATTACAAATCAGCGGTACAAA 60
||||| |||||||||||||| |||||||||||||| || ||||||||| ||||| |||
Sbjct 5 CCATTTACTCTCAAAAACTC-AAACACTTAGAGAC---AA-TACAAATCATCGGTAAAAA 59
Query 61 GAATGGCGGAAGAGGCATCTAGTTTGGTCGGGATCATTGAAACAACTGTAGAGCTAAAAT 120
|||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 60 GAATGGCGGAAGAGGCATCTAGTTTGGTTGGGATCGTTGAGACAACTGTAGAGCTAAAAT 119
Query 121 CTTCGGTGGAGAAGTTCCATGACCTGCTTGTCGGGAGACCGCACCATATGTCCAATGCAA 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 CTTCGGTGGAGAAGTTCCATGACCTGCTTGTCGGGAGACCACACCATATGTCCAATGCAA 179
Query 181 CTCCATCCAACATTCAGAGCGCTGAGCTGCAAGAAGGCGAAATGGGCCAAGTTGGCGCCG 240
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 180 CTCCATCCAACATTCAGAGCGCTGAGCTTCAAGAAGGCGAGATGGGCCAAGTTGGCGCCG 239
Query 241 TCATCCTCTGGAATTACGTTCATGATGGCGAGGCAAAGGT-GGCGAAACAAAGGATCGAG 299
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 240 TCATCCTCTGGAATTACGTTCATGATGGGGAGGCAAA-GTCGGCGAAACAAAGGATCGAG 298
Query 300 TCACTGGATCCGGATCACAATCGGGTCACGTATAAGGTGGTAGAGGGTGATTTATTGAAA 359
||| |||||||||| | |||||| ||||||| | |||||||||||||||||||||||||
Sbjct 299 TCATTGGATCCGGAGAAAAATCGGATCACGTACAGGGTGGTAGAGGGTGATTTATTGAAA 358
Query 360 GAGTACACGAGTTTCGTGACGACCTTCCAAGTGACCCCTAAAGAAGGAGAACCTGGAAGT 419
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 359 GAGTACACGAGTTTCGTGACGACCTTCCAAGTGACACCTAAGGAAGGAGAACCTGGAAGT 418
Query 420 GTTGCACATTGGCACTTTGAGTATGAGAAAATCAACGAAGAGGTGGCTCACCCTGAAACT 479
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 419 GTTGCACATTGGCACTTTGAGTATGAGAAAATTAACGAGGAGGTGGCTCACCCTGAAACT 478
Query 480 CTCCTCCAGTTAGCTGTTGAAGTCTCTAAAGAGATGGATGAACATCTCTTATCCGAGGAA 539
||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 CTCCTCCAGTTGGCAACCGAAGTCTCTAAAGATATGGATGAACATCTCTTATCCGAGGAA 538
Query 540 TAGAG 544
|||||
Sbjct 539 TAGAG 543
> AT1G70860.2 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:26718320-26718992 REVERSE
LENGTH=480
Length=480
Score = 483 bits (261), Expect = 1e-135
Identities = 410/483 (85%), Gaps = 6/483 (1%)
Strand=Plus/Plus
Query 63 ATGGCGGAAGAGGCATCTAGTTTGGTCGGGATCATTGAAACAACTGTAGAGCTAAAATCT 122
|||||||| || | ||||| |||||| |||||| |||| ||||| ||||| |||||||||
Sbjct 1 ATGGCGGAGGAAGTATCTACTTTGGTTGGGATCCTTGAGACAACCGTAGACCTAAAATCT 60
Query 123 TCGGTGGAGAAGTTCCATGACCTGCTTGTCGGGAGACCGCACCATATGTCCAATGCAACT 182
||| || ||||| |||||| || |||| ||||| || ||| |||| ||| ||| | ||
Sbjct 61 TCGACAGAAAAGTTTCATGACATGTTTGTTGGGAGGCCACACAATATCTCCGATGTATCT 120
Query 183 CCATCCAACATTC-AGAGC-GCTGAGCTGCAAGAAGGCGAAATGGGCCAAGTTGGCGCCG 240
||||||||| ||| || || | ||||||||| |||||||||||||| |||||||| ||
Sbjct 121 CCATCCAACTTTCAAG-GCTG-TGAGCTGCATGAAGGCGAAATGGGACAAGTTGGTGCTA 178
Query 241 TCATCCTCTGGAATTACGTTCATGATGGCGAGGCAAAGGTGGCGAAACAAAGGATCGAGT 300
|| || | |||||||||||||||||||| |||||||| || | |||| | ||||| ||||
Sbjct 179 TCCTCTTTTGGAATTACGTTCATGATGGGGAGGCAAAAGTAGTGAAATAGAGGATTGAGT 238
Query 301 CACTGGATCCGGATCACAATCGGGTCACGTATAAGGTGGTAGAGGGTGATTTATTGAAAG 360
|| | |||||||| ||||||||| ||| |||| |||| |||||||||| || ||||||
Sbjct 239 CAATAGATCCGGAGAACAATCGGGCCACATATAGGGTGTTAGAGGGTGACCTAATGAAAG 298
Query 361 AGTACACGAGTTTCGTGA-CGACCTTCCAAGTGACCCCTAAAGAAGGAGAACCTGGAAGT 419
|||||| ||| ||| ||| | |||||||| ||||||||||| ||||||||||||||||||
Sbjct 299 AGTACAAGAGCTTCTTGATC-ACCTTCCAGGTGACCCCTAAGGAAGGAGAACCTGGAAGT 357
Query 420 GTTGCACATTGGCACTTTGAGTATGAGAAAATCAACGAAGAGGTGGCTCACCCTGAAACT 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 GTTGCACATTGGCACTTTGAGTATGAGAAAATCAACGAGGAGGTGGCTCACCCTGAAACT 417
Query 480 CTCCTCCAGTTAGCTGTTGAAGTCTCTAAAGAGATGGATGAACATCTCTTATCCGAGGAA 539
||||||||||| || | |||| || |||||||| |||||||||||||| || ||||||
Sbjct 418 CTCCTCCAGTTTGCAATCAAAGTTTCCAAAGAGATCGATGAACATCTCTTTTCAGAGGAA 477
Query 540 TAG 542
|||
Sbjct 478 TAG 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5