BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476224
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725... 843 0.0
AT1G70830.1 | Symbols: MLP28 | MLP-like protein 28 | chr1:26709... 523 7e-148
AT1G70850.1 | Symbols: MLP34 | MLP-like protein 34 | chr1:26715... 518 3e-146
> AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725626-26726544
REVERSE LENGTH=818
Length=818
Score = 843 bits (456), Expect = 0.0
Identities = 536/574 (93%), Gaps = 8/574 (1%)
Strand=Plus/Plus
Query 1 ACACTCATCTCCTAAATTCCTTACCTAATATTTTCTTAAGATAAGC-GAAAAATCATGGC 59
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1 ACACTCATCTCCTAAATTCCTTACATAATATTTTCTTAAGATAAGCAAAAAAATCATGGC 60
Query 60 AGAAGCGTCTAGTTTGGTGGGGAAACTTGAGACCGAAGTGGAGATCAAAGCTTCGGCTGG 119
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 AGAAGCGTCTAGTTTGGTGGGGAAACTTGAGACAGAAGTGGAGATCAAAGCTTCGGCCAA 120
Query 120 AAAGTTTCATCACATGTTTGCCG-GAGACCACACCGTGTCTCCAAAGCAACTCCAGATAA 178
|||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 AAAGTTCCATCACATGTTTACCGAGAGACCACACCATGTCTCCAAAGCAACTCCAGATAA 180
Query 179 AATTCATGGATGTGAGCTGCACGAAGGCGACTGGGGCAAAGTCGGCTCTATCGTCATCTG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATTCATGGATGTGAGCTGCACGAAGGCGACTGGGGCAAAGTCGGCTCTATCGTCATCTG 240
Query 239 GAAATACGTTCATGGCAAATGGAAAGGTATCAGTGGCGAAGGATAGGGTCGAGGCGGTGG 298
|||||||||||||| | ||||||| || |||||| |||| ||| | ||||||||||||
Sbjct 241 GAAATACGTTCATG--A--TGGAAAGTTAACAGTGGGGAAGAATAAGATCGAGGCGGTGG 296
Query 299 ATCCGGAGAAGAACCTGATCACGTTCAAGGTTTTAGAAGGTGATCTGATGAAAGAGTATA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 297 ATCCGGAGAAGAACCTGATCACGTTCAAGGTTTTAGAAGGTGATCTGATGAATGAGTACA 356
Query 359 AGAGCTTCGCATTCACAATCCAAGTGACCCCTAAGCAAGGAGG-GCCAGGGAGTATTGTG 417
||||||||||||| ||| |||||||||||||||||||||| || | |||||||||||| |
Sbjct 357 AGAGCTTCGCATTTACACTCCAAGTGACCCCTAAGCAAGG-GGAGTCAGGGAGTATTGCG 415
Query 418 CACTGGCACCTTGACTATGAGAAAATTAGCGAGGAGGTGGCTCATCCCGAAACTCTCCTC 477
||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 416 CACTGGCACCTGGAGTATGAGAAAATTAGCGAGGAGGTAGCTCATCCCGAAACCCTTCTC 475
Query 478 CAATTCTTTGTCGAGATCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAATAGAAA 537
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CAATTCTGTGTCGAGATCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAATAGAAA 535
Query 538 ATTACTCCTCGTATGTGTGTGTGTCTTTGAAACT 571
| |||||||||| |||||||| ||||||||||||
Sbjct 536 AATACTCCTCGTCTGTGTGTGGGTCTTTGAAACT 569
Score = 82.4 bits (44), Expect = 5e-15
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 613 tgtgttggtgtgtgtcatgtgtgtATGCGTACTACTACGGTTGAGTTATGTTTGAA 668
||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||
Sbjct 644 TGTGTTGGTGTGTGTAATGCGTGTATGCCTACTACTACGGTTGAGTTATGTTGGAA 699
> AT1G70830.1 | Symbols: MLP28 | MLP-like protein 28 | chr1:26709947-26711462
REVERSE LENGTH=1331
Length=1331
Score = 523 bits (283), Expect = 7e-148
Identities = 413/474 (87%), Gaps = 15/474 (3%)
Strand=Plus/Plus
Query 64 GCGTCTAGTTTGGTGGGGAAACTTGAGACCGAAGTGGAGATCAAAGCTTCGGCTGGA-AA 122
|||||||||||||||||||| || ||||| || ||||||||||| ||||||||| || ||
Sbjct 122 GCGTCTAGTTTGGTGGGGAAGCTAGAGACAGACGTGGAGATCAAGGCTTCGGCT-GATAA 180
Query 123 GTTTCATCACATGTTTGC-CGGAGACCACACCGTGTCTCCAAAGCAACTCCAGATAAAAT 181
|||||| |||||||| || ||| |||||||| |||||||||||||| ||||| || ||
Sbjct 181 GTTTCACCACATGTTCGCTGGGAAACCACACCATGTCTCCAAAGCAAGTCCAGGCAACAT 240
Query 182 TCATGGATGTGAGCTGCACGAAGGCGACTGGGGCAAAGTCGGCTCTATCGTCATCTGGAA 241
||| |||||||| |||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 241 TCAGGGATGTGATCTGCACGAAGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAA 300
Query 242 ATACGTTCATGGCAAATGGAAAGGTATCA-GTGGCGAAGGATAGGGTCGAGGCGGTGGAT 300
||||| ||| | |||| ||| | | ||||||||||| ||| |||||||||||||
Sbjct 301 TTACGTACAT-G---ATGGGGAGGCA-AAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAG 355
Query 301 CCGGAGAAGAACCTGATCACGTTCAAGGTTTTAGAAGGTGATCTGATGAAAGAGTATAAG 360
|| || |||||| |||||||||| | |||| ||||||||||||||||||||||||| |||
Sbjct 356 CCAGATAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAG 415
Query 361 AGCTTC--GCATTCACAATCCAAGTGACCCCTAAGCAAGGAGGGCCAGGGAGTATTGTGC 418
|||||| || |||| ||||| ||||||||||||| ||||| || || ||||||||||
Sbjct 416 AGCTTCTTGC--TCACCATCCAGGTGACCCCTAAGCCTGGAGGCCCTGGAAGTATTGTGC 473
Query 419 ACTGGCACCTTGACTATGAGAAAATTAGCGAGGAGGTGGCTCATCCC-GAAACTCTCCTC 477
||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 474 ACTGGCACCTTGAGTATGAGAAAATTAGCGAGGAGGTAGCTCA-CCCGGAAACTCTCCTC 532
Query 478 CAATTCTTTGTCGAGATCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAA 531
|| |||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 533 CAGTTCTGTGTCGAGGTCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAA 586
> AT1G70850.1 | Symbols: MLP34 | MLP-like protein 34 | chr1:26715183-26716829
REVERSE LENGTH=1282
Length=1282
Score = 518 bits (280), Expect = 3e-146
Identities = 415/478 (87%), Gaps = 17/478 (4%)
Strand=Plus/Plus
Query 61 GAAGCGT-CTAGTTTGGTGGGGAAACTTGAGACCGAAGTGGAGATCAAAGCTTCGGCTGG 119
||||| | |||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 98 GAAGC-TCCTAGTTTGGTGGGGAAGCTAGAGACAGAAGTGGAGATCAAAGCTTCGGCTGG 156
Query 120 AAAGTTTCATCACATGTTTGCC-GG-AGACCACACCGTGTCTCCAAAGCAACTCCAGATA 177
| |||||||||||||||||||| || || ||||||| |||||||||||||| ||||| |
Sbjct 157 ACAGTTTCATCACATGTTTGCCGGGAAG-CCACACCATGTCTCCAAAGCAAGTCCAGGCA 215
Query 178 AAATTCATG-GATGTGAGCTGCACGAAGGCGACTGGGGCAAAGTCGGCTCTATCGTCATC 236
| ||||| | | ||||| |||||||||||||||||||||| ||||||||||||||| ||
Sbjct 216 ACATTCA-GAGCTGTGATCTGCACGAAGGCGACTGGGGCACTGTCGGCTCTATCGTCTTC 274
Query 237 TGGAAATACGTTCATGGCAAATGGAAAGGTATCA-GTGGCGAAGGATAGGGTCGAGGCGG 295
||||| |||||||| | |||| ||| | | ||||||||||| || |||||||||
Sbjct 275 TGGAATTACGTTCA---C-GATGGGGAGGCA-AAGGTGGCGAAGGAGAGAATCGAGGCGG 329
Query 296 TGGATCCGGAGAAGAACCTGATCACGTTCAAGGTTTTAGAAGGTGATCTGATGAAAGAGT 355
|||| |||||||||||| |||||||||| | |||| ||||||||||||||||||||||||
Sbjct 330 TGGAGCCGGAGAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGT 389
Query 356 ATAAGAGC--TTCGCATTCACAATCCAAGTGACCCCTAAGCAAGGAGGGCCAGGGAGTAT 413
| |||||| || | | |||| ||||| |||||||||||||| |||||||| || |||||
Sbjct 390 ACAAGAGCTTTTTG-A-TCACGATCCAGGTGACCCCTAAGCATGGAGGGCCTGGAAGTAT 447
Query 414 TGTGCACTGGCACCTTGACTATGAGAAAATTAGCGAGGAGGTGGCTCATCCCGAAACTCT 473
|||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 448 TGTGCATTGGCACCTTGAGTATGAGAAAATCAGCGACGAGGTAGCTCATCCCGAAACTCT 507
Query 474 CCTCCAATTCTTTGTCGAGATCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAA 531
||||||||||| ||| ||| ||||| |||||||||||||||||||||| ||||||||
Sbjct 508 CCTCCAATTCTGTGTTGAGGTCTCCCAAGAGATCGACGAACATCTCTTATCCGAGGAA 565
Score = 466 bits (252), Expect = 1e-130
Identities = 394/460 (86%), Gaps = 19/460 (4%)
Strand=Plus/Plus
Query 84 ACTTGAGACCGAAGTGGAGATCAAAGCTTCGGCTGGA-AAGTTTCATCACATGTTTGCC- 141
||||||||| || ||||||||||||||||| ||| || ||||| ||||||||||| |||
Sbjct 589 ACTTGAGACAGAGGTGGAGATCAAAGCTTCCGCT-GAGAAGTTCCATCACATGTTCGCCG 647
Query 142 GGAGACCACACCGTGTCTCCAAAGCAACTCCA-GATAAAATTCATG-GATGTGAGCTGCA 199
||| |||||||| |||||| |||||||||||| || || ||||| | | ||||| |||||
Sbjct 648 GGAAACCACACCATGTCTCTAAAGCAACTCCAGGA-AACATTCA-GAGCTGTGATCTGCA 705
Query 200 CGAAGGCGACTGGGGCAAAGTCGGCTCTATCGTCATCTGGAAATACGTTCATGGCAAATG 259
|||||| |||||||||| |||||||||||||||| ||||||| ||||||||| | |||
Sbjct 706 CGAAGGTGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAACTACGTTCAT-G---ATG 761
Query 260 GAAAGGTATCA-GTGGCGAAGGATAGGGTCGAGGCGGTGGATCCGGAGAAGAACCTGATC 318
| ||| | | ||||| ||||| ||| | |||||||||||||| ||||| ||| |||||
Sbjct 762 GGGAGGCA-AAGGTGGCAAAGGAGAGGATTGAGGCGGTGGATCCAGAGAAAAACTTGATC 820
Query 319 ACGTTCAAGGTTTTAGAAGGTGATCTGATGAAAGAGTATAAGAGCTTCGCATTCACAATC 378
||||||| |||| ||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct 821 ACGTTCAGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAGAGCTTCGTAATCACAATC 880
Query 379 CAAGTGACCCCTAAGCAAGGAGGGCCAGGGAGTATTGTGCACTGGCACCTT-GACTATGA 437
|||||||| |||||||| ||||| |||||||| | ||||| ||||| ||| || |||||
Sbjct 881 CAAGTGACTCCTAAGCATGGAGGTTCAGGGAGTGTGGTGCATTGGCA-CTTCGAGTATGA 939
Query 438 GAAAATTAGCGAGGAGGTGGCTCATCCCGAAACTCTCCTCCAATTCT-TTGTCG-AGATC 495
|||||| | |||||||||||||||||| || ||||||||||| || | |||| || ||
Sbjct 940 GAAAATAAACGAGGAGGTGGCTCATCCTGAGACTCTCCTCCAGTT-TGCCGTCGAAG-TC 997
Query 496 TCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAATAGA 535
|||||||| |||||||||||||||||||||||||||||||
Sbjct 998 TCCAAAGAAATCGACGAACATCTCTTGGCCGAGGAATAGA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32300556521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5