BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476225
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70900.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1604 0.0
> AT1G70900.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G23110.4);
Has 57 Blast hits to 57 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26731813-26733875
FORWARD LENGTH=1191
Length=1191
Score = 1604 bits (868), Expect = 0.0
Identities = 1019/1088 (94%), Gaps = 25/1088 (2%)
Strand=Plus/Plus
Query 1 ttcttcttcttcttcttctttctttccaaacttttctctctgttacttccatt-c-tt-t 57
|||||||||||||||| |||| |||||||||||||||||||||||||| | || | || |
Sbjct 8 TTCTTCTTCTTCTTCTCCTTTTTTTCCAAACTTTTCTCTCTGTTACTTAC-TTCCATTAT 66
Query 58 tctcgagctttttcttatcttcATCGCTTAAGTTTCGAA--TTCGACA-TC--TCTCTTT 112
| |||||||| ||||||||||||||||||||| |||||| ||||| | || |||| ||
Sbjct 67 TTTCGAGCTTATTCTTATCTTCATCGCTTAAGGTTCGAATTTTCGA-ATTCGATCTC-TT 124
Query 113 TTTGTTTTCTTGTGGTGATTGTAGC-AGTAGTTG-AATCAACT-GTATTAAGCCAGGTTA 169
|||| | | | | | | | | ||||| || |||||| | ||||||||||||| ||
Sbjct 125 TTTG-TAGC-TAT-ACCAAT-CA-CAAGTAGCTGAAATCAA-TAGTATTAAGCCAGGCTA 178
Query 170 GCTAGACCAGCAAGT-AA-TTGCTGGCTAGCAGGATCCTCTATGAGCCCTCAAAGCGTAT 227
||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 179 GCTAGACCAGCAAGTAAATTTGCTGGCTAGCAGGATCCTC-ATGAGCCCTCAGAGCGTAT 237
Query 228 CGAAGACGAGCAAATCCCTTGAGGGTGTCCATGGGGTTCATGTTGTTTCTCATTCTCATT 287
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 CGAAGACTAGCAAATCCCTTGAGGGTGTCCATGGGGTTCATGTTGTATCTCATTCTCATT 297
Query 288 TCGGATTTGAGAGTATTGGCCAAGTTTCAAGCTTTGAGTCTGCGGATGCAGGAACAAAGC 347
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 298 TCGGATTTGAAAGTATTGGCCAAGTCTCTGGCTTTGAGTCTGCGGATGCAGGAACAAAGC 357
Query 348 AGAGACTATTCATTGAACGTGTTTGGCAACAAAGACCTCCATGCCTAAGACCCATCCATT 407
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAGACTTTTCATTGAACGTGTTTGGCAACAAAGACCTCCATGCCTAAGACCCATCCATT 417
Query 408 GCAGTATCCATGGCGATCAGAGTATCTTAGAAACAGCTGCTAATGTGATCACATCGATCC 467
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCAGCATCCATGGTGATCAGAGTATCTTAGAAACAGCTGCTAATGTGATCACATCGATCC 477
Query 468 CTTTCATTTTCCTCGGTATGCAGGCACCGAGGAAAAACCTGAACATGAAGGTGTATGCAA 527
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 478 CTTTCATTTTCCTCGGTATGCAGGCACCGAGGAAAAACCTGAACATGAAGGTATATGCAA 537
Query 528 ACTCCTTAATTGGAGTTGGAATTGCATCGAGTTTGTATCATTCTTCAAGAGGGA-GATTG 586
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 538 ACTCCTTAATCGGAGTTGGAATTGCATCGAGTTTGTATCATTCTTCAAGAGGGAAGTTT- 596
Query 587 AGGAAGTATCTTAGATGGGCTGATTACACAATGATAGCTACAGCGACAGTGTGTCTAACG 646
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 597 AGGAAGTACCTTAGATGGGCTGATTACACAATGATAGCTACAGCGACAATATGTCTAACG 656
Query 647 AGGGCTCTTAGAGAAGAGAACCCAAAGTTCTTGATGGCCGCATCAGCTTTGGCTCTACCG 706
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 AGGGCGCTTAGAGAAGAGAACCCAAAGTTCTTGATGGCTGCATCAGCTTTGGCTCTACCG 716
Query 707 TTCCAGCCTCTCGTGGTATCAGCTGTTCACACTGGAATGATGGAGGTAGCATTTGCGAAA 766
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTCAGCCTCTCGTGGTATCAGCTGTTCACACTGGAATGATGGAGGTAGCATTTGCGAAA 776
Query 767 CGAGCCTTAGAGGATCCAGATTTGAAAATGGCTCATGATGTACACAAGATGTCTTCGTTA 826
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CGAGCCTTAGAGGATCCGGATTTGAAAATGGCTCATGATGTACACAAGATGTCTTCGTTA 836
Query 827 TTGGGCGGAGCATTGTTTATAGCTGATGATCTTTTCCCTGAAACACCATTCATTCACGCC 886
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTAGGCGGAGCATTGTTCATAGCTGATGATCTTTTCCCTGAAACACCATTCATTCACGCC 896
Query 887 GGTTGGCATCTCGCCGCAGCCATTGGCGTTGGGACTTGCAATAAGCTTCTTCAGTAATCC 946
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 897 GGTTGGCATCTCGCCGCAGCCATTGGCGTTGGAACTTGCAATAAGCTTCTTCAGTAATCC 956
Query 947 ACAGTACCAAATATATTGAGTGATTGTGGAACTGCTACATTCTTGGTTTAGTGAGACCAC 1006
|||||||||| |||||||||||||||||||||||| |||||||||| ||| ||| |||||
Sbjct 957 ACAGTACCAACTATATTGAGTGATTGTGGAACTGCCACATTCTTGGCTTAATGAAACCAC 1016
Query 1007 TAGTACGTGTGGTTTCACTAAGCTCATAAATCAGCCGACATAACTAGTAGTAGTCATCTC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TAGTACGTGTGGTTTCACTAAGCTCATAAATCAGCCGACATAACTAGTAGTAGTCATCTC 1076
Query 1067 TATCTTTA 1074
||||||||
Sbjct 1077 TATCTTTA 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5