BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476226
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70920.1 | Symbols: ATHB18, HB18 | homeobox-leucine zipper p... 1426 0.0
> AT1G70920.1 | Symbols: ATHB18, HB18 | homeobox-leucine zipper
protein 18 | chr1:26735956-26738665 FORWARD LENGTH=1037
Length=1037
Score = 1426 bits (772), Expect = 0.0
Identities = 866/910 (95%), Gaps = 12/910 (1%)
Strand=Plus/Plus
Query 1 CTCCTTTGTCTCGCTTTTTTCCTTTGTTCTTTCACATGTGTATATACACACAGAACACAC 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCTTTGTCTCGCTTTTTTCTTTTGTTCTTTCACATGTGTATATACACACAGAACACAC 60
Query 61 ACTTAAATTTCTATTATCATATAAAACTTCAACTTTACCTTTTCTCTT--ACAAAAAACA 118
||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 61 ACTTACATTTCTATTATCATATAAAACTTCAACTTTACCTTTTATCTTCCAAAAAAAACA 120
Query 119 CTATCTTCTTCATCAAATTCTATTGATTCTGTTT-TTCCTCATCCTCATCCATGGCCCTC 177
||||||||||||||||||||| |||||||||||| || | |||||| ||||||||||||
Sbjct 121 CTATCTTCTTCATCAAATTCTCTTGATTCTGTTTCTT-TTTATCCTCCTCCATGGCCCTC 179
Query 178 TCACCTAATTCAAGCTCTTTAGATTTAACAATCTCAATTCCGAGTTTTTCTCCATCTCCT 237
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 180 TCACCTAATTCAAGCTCTTTAGATTTAACAATCTCAATTCCGAGCTTCTCTCCATCTCCT 239
Query 238 TCACTTGGTGATCATGATCACGGGGTGAGAGATTTGGACATAAACCAAACTCCAAAGACG 297
||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 240 TCACTTGGTGATC---ATCACGGGATGAGAGATTTTGACATAAACCAAACACCAAAGACG 296
Query 298 GAAGAAGATCGTGAGTGGATCATGATCGGTGCAACACCACATGTCAACGAAGATGATAGC 357
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGAAGATCGTGAGTGG---ATGATCGGTGCAACACCACATGTCAACGAAGATGATAGC 353
Query 358 AACCCCGGTGGCCGGCGGCGCAAAAAGCTCCGTCTAACCAAAGAGCAATCACATCTTCTT 417
||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 354 AACTCGGGTGGCCGGCGGCGCAAAAAGCTCCGTCTAACGAAAGAACAATCACATCTTCTT 413
Query 418 GAAGAGAGTTTCATACAAAATCATACCTTAACCCCTAAGCaaaaaaaaGATTTAGCCACC 477
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 414 GAAGAGAGTTTCATACAAAACCATACCTTAACCCCTAAGCAAAAAAAAGATTTGGCCACC 473
Query 478 TTTTTGAAGCTTAGTCAAAGGCAAGTTGAGGTGTGGTTTCAAAATCGAAGAGCTCGGAGT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTTTTGAAGCTTAGTCAAAGGCAAGTTGAGGTGTGGTTTCAAAATCGAAGAGCTCGGAGT 533
Query 538 AAGCTAAAGCACACGGAGATGGAATGTGAGTATCTAAAAAGATGGTTCGGGTCGTTGAAG 597
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 534 AAGCTAAAGCACACGGAAATGGAATGTGAGTATCTAAAAAGATGGTTCGGATCGTTGAAG 593
Query 598 GAGCAAAATCGACGGCTACAAATAGAAGTTGAAGAACTACGAGCTCTAAAGCCATCATCG 657
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 GAACAAAATCGACGGCTACAAATAGAAGTTGAAGAACTACGAGCGCTAAAGCCATCATCG 653
Query 658 ACCTCGGCTTTAACCATGTGTCCTCGGTGTGAACGTGTGACTGATGCAGCAGATAATGAC 717
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 654 ACCTCGGCTTTAACCATGTGTCCTCGGTGTGAACGTGTGACTGATGCAGTAGATAATGAC 713
Query 718 TCTAATGCCGTTCAAGAGGGTGCAGTTCTAAGCAGCCGGTCACGGATGACAATTTCCTCT 777
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 714 TCTAATGCCGTTCAAGAGGGGGCAGTTCTTAGCAGCCGGTCACGGATGACAATTTCCTCT 773
Query 778 TCCTCTTCTCTCTGTTGACTGGTTTGGTCGAAGTCAAAAGTCAAAAGATAGAAACGCCTG 837
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 774 TCCTCTTCCCTCTGTTGACTGGTTTGGTCGAAGTCAAAAGTCAAAAGATA-AA-CGCCTG 831
Query 838 TTTCGGGGTACAAAGCAAAGATTTGATGATGATTAGGAAGATTTTGTGCATAGTTCGCTA 897
|||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||
Sbjct 832 TTTCGGGGTAAAAAGCAAAGATTTGATGATGATTAGGAGGATTTTGTGTATAGTTTGCTA 891
Query 898 ATTACTTATT 907
|||| |||||
Sbjct 892 ATTATTTATT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45210732300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5