BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476228

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70985.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   837    0.0  


> AT1G70985.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr1:26764672-26765285 REVERSE LENGTH=614
Length=614

 Score =  837 bits (453),  Expect = 0.0
 Identities = 528/564 (94%), Gaps = 5/564 (1%)
 Strand=Plus/Plus

Query  1    AGACTCAAGAAGAAAGAAAGTCTCTAAAAACTTC-CTCTTTCTCTTACACAAACATATAT  59
            |||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||
Sbjct  1    AGACTCAAGAAGAAAGAAAGTCTCGAAAATCTTCTCTCTTTCTCTTACACAAACATATAT  60

Query  60   TTTCTTCTTTACCATTAAAC-AAATCTTTCATAAAAAATTTGGCCATGAGTAAACGTTAC  118
            |||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct  61   TTTCTTGTTTACCATTAAACAAAATCTTTCATAAAAAA-TTGGCCATGAATAAACGTTAC  119

Query  119  GGTCACCTCAAAAGTCTATTGTTCGTGTTTTATCTTGTCAACTTCCCCTTCACAACCATA  178
            |||||||||| |||||||||||||||||||| |||||| |  |||||||||| ||| |||
Sbjct  120  GGTCACCTCATAAGTCTATTGTTCGTGTTTTCTCTTGTTATGTTCCCCTTCATAACAATA  179

Query  179  TCACAGACGCCATGTCCGTACCCTTGTTACCC-TCCACCAATAGCCGGTACTGGCTCCAC  237
            ||||||||||||||||||||||||||| |||| |   |||||||||||||||||||||||
Sbjct  180  TCACAGACGCCATGTCCGTACCCTTGTAACCCGT-TGCCAATAGCCGGTACTGGCTCCAC  238

Query  238  TCAACCGGCCGGTTATTATCCTCAACCGACCGGTTACTATCCTCCCCCATCGTCGAGTAA  297
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  239  TCAACCGGCCGGTTATTATCCTCAACCGACCGGTTACTATCCTCCTCCATCGTCGAGTAA  298

Query  298  TGTACCAAATTACCCTTCTCCACCTTATTACGGAGGTAGTCCCGGCGGGGGATATAATGG  357
            |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct  299  TGTACCGAATTACCCTTCTCCACCTTATTACGGAGGTAATCCCAGCGGGGGATATAACGG  358

Query  358  TCCTCCACCGCCGGACCCTATCTTGCCTTATTTCCCGTTCTACTACAGAAAACTTCCTCA  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  359  TCCTCCACCGCCGGACCCTATCTTGCCTTATTTCCCGTTCTACTACAGAAAACCTCCTCA  418

Query  418  TCAGACGGATCAGTCATCATCTTCCGTGAAATCAACGGTCAAGATCGTAACGGTGGCAAA  477
            ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct  419  TCAGACGGATCAGTCATCATCTTCCATGAAATCAACTGTCAAGATCGTAACAGTGGCAAA  478

Query  478  TCTTTTTGCGGTACTTATGtttttttATTGGTAACGTTTTGTTTATGGTATAATTTTAAC  537
            |||| |||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||
Sbjct  479  TCTTCTTGCGGTACTTATGTTATTTTCTTGGTAACGTTTTGTTTATGGGATAATTGTAAC  538

Query  538  TTTCTGTAGTTGAAACTTTGATGT  561
            ||||| | ||||||||||| ||||
Sbjct  539  TTTCTATGGTTGAAACTTTTATGT  562



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5