BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476229
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70990.1 | Symbols: | proline-rich family protein | chr1:26... 850 0.0
> AT1G70990.1 | Symbols: | proline-rich family protein | chr1:26767297-26768076
REVERSE LENGTH=780
Length=780
Score = 850 bits (460), Expect = 0.0
Identities = 617/688 (90%), Gaps = 29/688 (4%)
Strand=Plus/Plus
Query 1 AGTATATCAGTCCCATGCACCCTCTTACCAAACCACCTCACCAAATTTTCAACTC-TTTT 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 13 AGTATATCAGTCCCATGCACCCTCTTACCAAACCACCTCACCAAATTTTCAACTCTTTTT 72
Query 60 ---T--------AGAATCTTCCCAAACCTCTCTTTATTTCGATT-AAAAAACATATAACA 107
| |||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 73 ACGTCCAACCAAAGAATCTTCCCAAACCTCTCTTTA-TTCGATTCTCCAGGCATATAACA 131
Query 108 ACTCTCACCATGCCGGAGAAAAATCGCCGTACAAAGGCTCTCACGGCCACTATCCTCACG 167
|||||||||||||||||||||| ||||||||||||||||||| | ||||| || | |||
Sbjct 132 ACTCTCACCATGCCGGAGAAAACTCGCCGTACAAAGGCTCTCGCCGCCACGCTCTTGACG 191
Query 168 GCGA-TGACGTTTCTCGCGTTTCCAATGATTATCAACGCTTCAGATTCATCAACCAATAG 226
| | || ||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 192 AC-AGTGGTGTTTCTCACGTTTCCAATGATCATCAACGCTTCAGATTCATCAACCAATAG 250
Query 227 AAAACTCGAAGAGGATCCAATAAAATGCACACCTTGTCTCCAAAACATTCCTCCTCC--- 283
|||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct 251 AAAACTCGAAGAGGATCCTATAAAATGTACACCATGTCTTCAAAACATTCCTCCTCCGTC 310
Query 284 ACC------GCCATCACCTCCACCGCCGTCTCCAGCTTGTCCTCCACCACCACTGCCTCC 337
||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 311 ACCTCCACCGCCATCACCTCCACCGCCGTCTCAAGCTTGTCCTCCACCACCACTACCTCC 370
Query 338 TTCACCGCCAAAGAAGTCTTATTGTCCACCACCTCCGTCCACTTACATATACATGACTGG 397
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 371 TTCACCGCCGAAGAAGTCTTATTGTCCACCGCCTCCGTCCACTTACATATACATGACGGG 430
Query 398 TCCACCAGGAGAGTTGTATCCCATTGATCAGCAGTTTGGAGCGGCTGCTGCAAAAAGGTT 457
||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||
Sbjct 431 TCCACCAGGAGAGTTGTATCCCATTGACCAGCAGTTTGGAGCGGCTGTTACAAAAAGCTT 490
Query 458 CACGGTGGTGAAGATCTCAGGCCTGATCGCGTTTGGAGTTATGAGTTTCTTGATGATCAT 517
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 491 CACCGTGGTGAAGATCTCAGGCCTGATCGCGTTTGGGGTTATGAGTTTCTTGATGATCAT 550
Query 518 GAACTGATGTTGTTTCGTTGACTCG-TTGTTTATCGTTTCATAGATTCGTTTACTTTTGA 576
||| ||||| |||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct 551 GAATTGATGATGTTTCGTTGACCCCCTT-TTTATCGTTTCATAGATTCGTTTACTTTTAA 609
Query 577 CGGATGGGTATATGTTGTTCAGATAACTCTTAATTAATGATTATC-CGATAAATTATCGA 635
|||||||||||||||||||||||||||||| ||||| | |||||| | |||||||| |||
Sbjct 610 CGGATGGGTATATGTTGTTCAGATAACTCTGAATTACTTATTATCTC-ATAAATTAACGA 668
Query 636 TTGTGCATTTTCTCTTTGGTTAGGATCA 663
|||||||||||||||| |||||||||||
Sbjct 669 TTGTGCATTTTCTCTTAGGTTAGGATCA 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5