BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476233
Length=2131
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71020.1 | Symbols: | ARM repeat superfamily protein | chr1... 3081 0.0
> AT1G71020.1 | Symbols: | ARM repeat superfamily protein | chr1:26790597-26793175
REVERSE LENGTH=2185
Length=2185
Score = 3081 bits (1668), Expect = 0.0
Identities = 1974/2119 (93%), Gaps = 32/2119 (2%)
Strand=Plus/Plus
Query 1 AAATTCGAATTTCAAGCCGCCGTATGCGACGGCGTAATGGCTGGTGGAGCTATCACTCCC 60
|||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 35 AAATTCGAATTTTAAGCCGCCGTGTGAGACGGCGTAATGGCTGGTGGAGCTATCACTCCC 94
Query 61 GCTTCTCTGATCGATCTTATCT-CCGAAATCAATGGGGTTCCGGTGAATTTTGGGGTGTT 119
| |||||| |||| |||||| | | |||||||||| | |||||| ||||||||| ||||
Sbjct 95 GATTCTCTCATCGGTCTTAT-TGCTGAAATCAATGAGATTCCGGGGAATTTTGGTTTGTT 153
Query 120 TAAGAAGGATTGTGCCGATCTCGCGCGACGTGTTGGTCTCTTGACGCATTTGATTGAGGA 179
||||||||||||| |||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 154 TAAGAAGGATTGTTCCGATCTCGCGCGACGAGTCGGTCTCCTGACGCATTTGATTGAGGA 213
Query 180 GATTAGGGATTCTTCTCCTCCTCCGCCGGAATCTGATGCTTCGTCGTCGTTGATTTCTTA 239
|| |||||||| | | |||| ||| |||||||||||||||| || ||||||| |||| |
Sbjct 214 AATCAGGGATTC-T-T-CTCCGCCGTCGGAATCTGATGCTTCTTCTTCGTTGAATTCTCA 270
Query 240 TGAATGTGATTGGTGGTCTGATCTTGTTGTGGGGCTTCAAGCCGCGAAGCGTCTTTTGTC 299
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 271 TGAATGTGATTGGTGGTCTGATCTTGTGGTGGGACTTCAAGCCGCGAAGCGTCTTTTGTC 330
Query 300 TTCAGCTACTAGTTTCCAAGCTCGCGAGTCCTCTGATGGGGCTGCCAAGAGAATCTTATT 359
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 331 TTCAGCTACTAGTTTCCAAGCTCGCGAGTCCTCTGATGGGGCAGCCAAGAGGATCTCATT 390
Query 360 CCAGTTCCAATGTGTTACATGGAAGTTGGAGAAAGCATTAGGTGATTTGCCATATGATCG 419
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 391 CCAGTTCCAATGTGTTACATGGAAGCTGGAGAAAGCATTAGGTGATTTGACATATGATAG 450
Query 420 ATATGACATCTCTGACGAAGTCCGCGAACAGGTGGAACTAGCAAGATTGCAGTTAAGAAG 479
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 451 ATATGATATCTCTGACGAAGTCCGTGAACAGGTGGAACTAGCAAGATTACAGTTAAGAAG 510
Query 480 AGCAATGCAGAGATATGGATCTTTAAATTCGAAGAAGTTCTCGAGTGAATTATCTGAGCC 539
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 511 AGCAATGCAGAGATATGGATCGTTAAATTCGAAGAAGTTCTCGAGTGGTTTATCTGAGCC 570
Query 540 AATGGAGAAAGATGCCTCAAGCAATACAAAGAGCAAAGTTATTGAGAAGTTGGAGAGTAT 599
||||||||||||||||||||| || | ||| ||||||||||| ||||||||||||||
Sbjct 571 AATGGAGAAAGATGCCTCAAG---TA-ATAGA--AAAGTTATTGAAAAGTTGGAGAGTAT 624
Query 600 TCCAGAGACGGTGCATTCCAACGTTCCTTTATCAGATGAGAAGAAATTTGAATCACCGCC 659
||||||||| ||| | | || ||||||||||||||||||||||||||||||| ||
Sbjct 625 TCCAGAGACAGTG-----C-A--TT-CTTTATCAGATGAGAAGAAATTTGAATCACCCCC 675
Query 660 TCCTCGGAAGAGCTCTTCGGTTTCCTTGGCCTTCTTTTTATCAAAGGATGCTGACGATGA 719
|||| ||||||||||||| || || ||||||||||||||||||||||||| ||| |||||
Sbjct 676 TCCTTGGAAGAGCTCTTCAGTATCATTGGCCTTCTTTTTATCAAAGGATGGTGATGATGA 735
Query 720 GAGATTAGAGAAAGTAGTTACCAAGAACAGTGATGACTCACAGAAATCGGATAAACTCAC 779
|||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 736 GAGATTAGAGAAAGCAGTTACCGAGAACAGCGATGACTCACAGAAATCGGATAATCTCAC 795
Query 780 GATCCCTGAGGATTTTCTTTGTCCAATCTCTCTGGAACTGATGAAGGATCCTGCTATTGT 839
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GATTCCAGAGGACTTTCTTTGTCCAATCTCTCTGGAACTGATGAAGGATCCTGCTATTGT 855
Query 840 TTCCACAGGACAGACATACGAGAGGTCGTACATACAGAGGTGGATAGACTGTGGAAATCT 899
||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 856 TTCCACAGGACAGACATACGAGAGGTCGTTCATTCAGAGATGGATAGACTGTGGAAATCT 915
Query 900 AAGATGCCCAAAGACCCAGCAGAAACTCAAAAACTTTACTCTTACTCCAAACTATGTCCT 959
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 916 GAGCTGCCCAAAGACACAGCAGAAACTTGAAAACTTTACTCTTACTCCAAACTATGTCCT 975
Query 960 CAGAAGCCTGATATCACAGTGGTGCACTAAGCACAACATTGAGCAACCAGGTGGTTACAT 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CAGAAGCCTGATATCTCAGTGGTGCACTAAGCACAACATTGAGCAACCAGGTGGTTACAT 1035
Query 1020 GAACGGTAGGACCCAAAACCCTGATGGGTCTTTCCGTGATCTAAGTGGAGACATGTCAGC 1079
||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1036 GAACGGTAGGACCAAAAACAGTGATGGGTCTTTCCGTGATCTAAGTGGAGATATGTCAGC 1095
Query 1080 GATCCGGGCATTGGTGCGTAAACTCTCTAGCCGATCAATCGAAGAGCGCAGGACTGCGGT 1139
|||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1096 GATCCGAGCATTGGTTTGTAAACTCTCTAGCCAATCAATCGAAGACCGCAGGACTGCGGT 1155
Query 1140 TTCTGAAATCCGTTCTCTGTCAAAAACAAGCACGGATAACCGCATTCTGCTTGCAGAAGC 1199
|||||||||||| ||||||||||||| |||||| || ||||| |||||| ||||||| ||
Sbjct 1156 TTCTGAAATCCGCTCTCTGTCAAAAAGAAGCACAGACAACCGAATTCTGATTGCAGAGGC 1215
Query 1200 AGGAGCCATCCCTGTTTTGGTCAAGCTTTTGATCTCAGA--G-GACACTGAAACGCAGGA 1256
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1216 AGGAGCCATCCCTGTTTTGGTCAAGCTTTTGACCTCAGATGGTGACACTGAAACGCAGGA 1275
Query 1257 AAATGCTGTCACTTGCATTCTTAACCTCTCCATATACGAACACAACAAAGAACTGATCAT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 AAATGCTGTCACTTGCATTCTTAACCTCTCCATATACGAACACAACAAAGAACTGATCAT 1335
Query 1317 GCTTGCAGGAGCAGTCACGTCTATAGTGCTAGTCCTCCGAGCTGGAACCATGGAAGCTAG 1376
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1336 GCTTGCAGGAGCAGTCACATCTATAGTGCTAGTCCTCCGAGCTGGAAGCATGGAAGCTAG 1395
Query 1377 AGAAAACGCTGCAGCTACTCTCTTTAGCCTTTCGTTAGCTGATGAAAACAAGATCATAAT 1436
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1396 AGAAAACGCTGCAGCTACTCTCTTTAGTCTTTCGTTAGCTGATGAGAACAAGATCATTAT 1455
Query 1437 AGGCGCATCGGGTGCGATACTGGCCTTAGTGGATCTGCTTCAGTATGGAAGCACCAGAGG 1496
||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 1456 AGGCGCATCAGGTGCGATAATGGCCTTAGTGGATCTGCTTCAATATGGAAGCGTCAGAGG 1515
Query 1497 GAAGAAAGACGCAGCTACGGCTCTGTTTAACTTGTGTATTTATCAGGGAAACAAAGGCAG 1556
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1516 GAAGAAAGACGCAGCTACGGCTCTGTTCAACTTGTGTATTTACCAGGGAAACAAAGGCAG 1575
Query 1557 AGCGGTTAGAGCCGGTATAGTAAACCCATTGGTGAAAATGCTGACTGACTCCTCGAGCGA 1616
||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1576 AGCAGTTAGAGCCGGTATAGTAAAGCCATTGGTGAAAATGCTGACAGACTCCTCGAGCGA 1635
Query 1617 CAGGATGGCCGATGAAGCCTTGACCATACTCTCGGTTCTAGCTAGTAACCAAGTCGCGAA 1676
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 GAGGATGGCTGATGAAGCCTTGACCATACTCTCGGTTCTAGCTAGTAACCAAGTCGCGAA 1695
Query 1677 AACTGCGATTTTGAGAGCCAACGCGATACCACCTTTGATAGATTGTCTCCAGAAGGATCA 1736
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1696 AACTGCGATTTTGAGAGCCAACGCAATACCACCTTTGATAGATTGTCTCCAGAAGGATCA 1755
Query 1737 ACCGCGAAACCGAGAGAATGCAGCTGCGATACTACTATCTCTTTGCAAGAGAGATACTGA 1796
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1756 ACCGCGAAACCGAGAGAACGCAGCTGCGATACTACTGTGTCTTTGCAAGAGAGATACTGA 1815
Query 1797 AAAACTAATCTCCATTGGTAGACTTGGAGCTGTTGTTCCATTGATGGAACTATCAAGAGA 1856
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 AAAACTGATCTCCATTGGTAGACTTGGAGCTGTTGTTCCATTGATGGAACTATCAAGAGA 1875
Query 1857 TGGGACAGAGAGAGCTAAACGAAAAGCTAATTCTTTGCTAGAGCTTCTCCGTAAATCATC 1916
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1876 CGGTACAGAGAGAGCTAAACGAAAAGCTAATTCTTTACTAGAGCTTCTCCGTAAATCATC 1935
Query 1917 CCGAAAATTAGGTTCACTCTAAATAGCCCTTAACAAGAATTAATTTAGTTTTGCTGGCTA 1976
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1936 CCGAAAATTAGGTTCACTCTAAATAGCCCTTAACATGAATTAATTTAGTTTTGCTGGCTA 1995
Query 1977 TTGATCTGTTTATTATGTCCTGTTTTATTTTTGAGTTTTTGGATGACTAATT-AATTTCC 2035
||||||||||||||||||||||| | || ||||||||||||| |||||||| |||||||
Sbjct 1996 TTGATCTGTTTATTATGTCCTGTATC-TTATTGAGTTTTTGGAAGACTAATTTAATTTCC 2054
Query 2036 ATTGGAG-A-AAGTGGTGGAGTCAAAAGAGTTAACGAGAATCGAACTCTTTTTTGACTCA 2093
||| ||| | ||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2055 ATTTGAGGAGAAG-G-TGGAGTCAAAAGAGTTAACGAGAATCGAACTCTTT---GACTCA 2109
Query 2094 CCTTTGTATTGATTTGTTA 2112
||||||||||||||||||
Sbjct 2110 TCTTTGTATTGATTTGTTA 2128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105672147225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5