BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476235
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71030.1 | Symbols: ATMYBL2, MYBL2 | MYB-like 2 | chr1:26795... 1149 0.0
> AT1G71030.1 | Symbols: ATMYBL2, MYBL2 | MYB-like 2 | chr1:26795123-26796364
REVERSE LENGTH=986
Length=986
Score = 1149 bits (622), Expect = 0.0
Identities = 827/920 (90%), Gaps = 37/920 (4%)
Strand=Plus/Plus
Query 1 TCAACCCACCAGTCCAAGTCAAACCTATATCCTCTATCCATCCCCTAATCCTATATATCA 60
||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1 TCAACCCACCAGTCCAAGTCAAACC----TCCTCAAGCCATCCCCTAATCCTATATATCA 56
Query 61 GTTTGCTTCTCGCAAACCACCTCATAATCAATCAACAGtttttttttaaaaaaaaaaaaC 120
|||| ||||||||||||||||||| |||| |||||||| |||| ||||||| ||
Sbjct 57 GTTT-CTTCTCGCAAACCACCTCACAATCTATCAACAG-----TTTT---AAAAAAAGAC 107
Query 121 ATAACTCAACCAATCTCACTTTGAAAAAGACATGAACAAGAGCCGCCTCCGTGCTCTCTC 180
||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 108 ATAACTCAACCAATCTCACTTTGAAAAAGACATGAACAAAACCCGCCTTCGTGCTCTCTC 167
Query 181 TCCGCCTTCCGGAATGCAACACCGTGGTAGAAGATGTCGATTGAGAGGAAGAAACTACAT 240
|| |||||||| |||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 168 CCCACCTTCCGGTATGCAACACCGT--AAG-AGATGTCGATTGAGAGGTCGAAACTACGT 224
Query 241 AAGGCCAGAAGTTAAACAAAACAACTTCTCAAAAGATGAAGACGATCTCATCCTCAAGCT 300
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 225 AAGGCCAGAAGTTAAACAACGCAACTTCTCAAAAGATGAAGACGATCTCATCCTCAAGCT 284
Query 301 TCATGCACTTCTTGGCAATAGATGGTCATTGATAGCGGGCAGATTGCCTGGACGAACGGA 360
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 285 TCATGCACTTCTTGGCAATAGATGGTCATTGATAGCGGGAAGATTGCCAGGACGAACCGA 344
Query 361 CAACGAAGTTAGGATCCATTGGGAAACTTACTTAAAGAGGAAGCTCATGAAAATGGGAAT 420
||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||||||
Sbjct 345 CAACGAAGTTAGGATCCATTGGGAAACTTACCTAAAAAGGAAGCTCGTAAAAATGGGAAT 404
Query 421 CGACCCAACTAATCATCGTCTCCACCACCACACCAACTACATTTCGAGACGAT-ACCTCA 479
||||||||| ||||||||||||||||| ||||||||||||||||| ||||| | |||||
Sbjct 405 CGACCCAACCAATCATCGTCTCCACCATCACACCAACTACATTTCTAGACG-TCACCTCC 463
Query 480 ATTCCTCACGTAAGGAACATGAAAC-AGAGATTATTAGTGATCAATCTTCTTCAGTATCC 538
|||| |||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 464 ATTCTTCACATAAGGAACATGAAACCA-AGATTATTAGTGATCAATCTTCTTCGGTATCC 522
Query 539 GAATCATCTGGTATAAGTACAATCTTACCCATTCCAAGTACCAATTGCTCGGAGGATAGT 598
||||||| |||| ||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 523 GAATCATGTGGTGTAA---CAATTTTGCCCATTCCAAGTACCAATTGCTCGGAGGATAGT 579
Query 599 ACTAGTACCGGACGAAGTCATTTGCCTGACCTCAACATCGCTCTCACCCCGACCGTGACT 658
|||||||||||||||||||||||||||||||| ||||| | ||||| |||| ||||||||
Sbjct 580 ACTAGTACCGGACGAAGTCATTTGCCTGACCTAAACATTGGTCTCATCCCGGCCGTGACT 639
Query 659 TCTTTGCCAGCTGGTTGCCTTCAGGACTTTAGTGAATCCTCTAACAAAGGTTCAACAGGT 718
|||||||||||| |||||||||||||| ||| |||||||||| ||| ||||||||||||
Sbjct 640 TCTTTGCCAGCTCTTTGCCTTCAGGACTCTAGCGAATCCTCTACCAATGGTTCAACAGGT 699
Query 719 CAAGAAACGCTTCTTCTATTCCAATGA-AAATTGTTGTATTTCTTTGTACACAT--GTTA 775
|||||||||||||||||||||| |||| |||| || |||||| ||||||||||| ||||
Sbjct 700 CAAGAAACGCTTCTTCTATTCCGATGAGAAATGGT-GTATTTGTTTGTACACATTTGTTA 758
Query 776 CATTACAAAGGCCCCTATATTATAATATTCACTAGAGAGATG-TATAACGATGTTTGAAA 834
|||||||| || | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 759 TATTACAAATGCAC--ATATTATAATATTCACTAGAGAGATGGTATAACGATGTTTGAAA 816
Query 835 TATGTTAATCCTGAATTGGACCGT-TG---A---AACAACTATTCTCTTAAATGTCTGGT 887
||||||||||||||||||||||| || | |||||||||||||||||||||| |||
Sbjct 817 TATGTTAATCCTGAATTGGACCGGCTGGTCATTGAACAACTATTCTCTTAAATGTCCGGT 876
Query 888 TTTGTTTTCGGTGATTAGTA 907
| ||||||| ||||||||||
Sbjct 877 TCTGTTTTCAGTGATTAGTA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5