BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476236
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71040.1 | Symbols: LPR2 | Cupredoxin superfamily protein | ... 2680 0.0
AT1G23010.1 | Symbols: LPR1 | Cupredoxin superfamily protein | ... 1085 0.0
> AT1G71040.1 | Symbols: LPR2 | Cupredoxin superfamily protein
| chr1:26796966-26800322 REVERSE LENGTH=2079
Length=2079
Score = 2680 bits (1451), Expect = 0.0
Identities = 1755/1897 (93%), Gaps = 40/1897 (2%)
Strand=Plus/Plus
Query 1 AACTTCTCTCCTCAACTTTTAAGTATTCcacacatacaaacacaca-a-acac---a--- 52
|||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 1 AACTTCTCTCCTCAACTTTTAAGTATTCCACACATACAAACACACACACACACTTGACTT 60
Query 53 ----c-----aTTTCGACAGCTCGTGAAGGACAAAGACATGGAGCCTAAGCCTGCTCGGA 103
| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 61 TTCTCATATAATTTCGACAGCTCGTGAAGGACAAAGACATGGAGCCT-----T-CTCGGA 114
Query 104 GGATAATGACCAGAGACATGTTCCTCCTAATCGTAGCGATGACATGGCTCGTAACCGGAG 163
||| |||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||
Sbjct 115 GGAGAATGACCAGAGACATGTTGCTTCTAATCGTAACGATGGCATGGCTCGTAACCGGAG 174
Query 164 ACGCAGGAGGCATAAAGGC-AGAGGAGCGACTGTTCAATCTTGAGAAGCTAGAGATGTTC 222
||| |||||||||||| || ||||||||||||||| ||||||| |||||| |||||||||
Sbjct 175 ACGAAGGAGGCATAAA-GCAAGAGGAGCGACTGTTTAATCTTGGGAAGCTTGAGATGTTC 233
Query 223 GTTGACAAGCTTCCTCATATACCTACTCTTCATGGCTACCACTTCGTCAATGGCTTCCTT 282
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 234 GTTGACAAGCTTCCTCATATACCAACACTTCATGGCTACCACTTCGTCAATGGCTTCCTC 293
Query 283 AAACCCAAATCTCTTAACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTG 342
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AAACCCAAATCTCTTCACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTG 353
Query 343 CCTGCCACGCCAGTGTTCGCGTATGGTACATCGAGA-CGTGT-AGCCACAGTTCCTGGAC 400
|||||||||||||||||||| ||||||||||| | | ||| | ||| |||||||||||||
Sbjct 354 CCTGCCACGCCAGTGTTCGCATATGGTACATC-AAAGCGT-TCAGCAACAGTTCCTGGAC 411
Query 401 CGACAATAGAAGCTGTTTATGGAGTCGACACATACGTGACGTGGCGAAATCACCTTCCTT 460
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 412 CAACAATAGAAGCTGTTTATGGCGTCGACACCTACGTGACGTGGCGAAATCACCTCCCTT 471
Query 461 TACATCATATCCTCCCTTGGGACCCAACAATCTCCCCTGCAATCCCTAAACACGGCGGCA 520
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 472 TACATCATATCCTCCCTTGGGACCCAACAATCTCTCCGGCAATCCCTAAACACGGCGGCA 531
Query 521 TTCCCACCGTGGTTCACTTGCACGGCGGCATCCACGAACCAACTAGCGATGGAAATGCAG 580
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 532 TTCCCACGGTGGTTCACTTGCACGGAGGTATCCACGAACCAACTAGCGATGGAAATGCAG 591
Query 581 ATTCATGGTTCACCGCTGGTTTCAAAGAGACAGGTTCCAAATGGACCAAAAAGACTACGC 640
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 592 ATTCATGGTTCACCGCTGGTTTCAAAGAAACTGGTTCCAAATGGACCAAAAAGACTACAC 651
Query 641 ATTACGTTAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGC-GTTGGGTTTG 699
||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 652 ATTACGTCAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGCGGCAGGG-TTG 710
Query 700 ACCAGAGTCAACCTTCTCGCCGGTTTGTTAGG-TGCTTACATTCTCCGCCACAGCTCCGT 758
||||||||||||||||| |||||||||||||| | ||||||||||||| || ||||| ||
Sbjct 711 ACCAGAGTCAACCTTCTTGCCGGTTTGTTAGGCT-CTTACATTCTCCGTCATAGCTCAGT 769
Query 759 CGAATCGCCTCTCCGACTACCTACCGGCCGTGAATTTGATCGTCCTTTGGTCATCTTTGA 818
|||||||||||| || |||||||||| || ||||| |||||||||||||||||||||||
Sbjct 770 CGAATCGCCTCTTCGGTTACCTACCGGACGCGAATTCGATCGTCCTTTGGTCATCTTTGA 829
Query 819 CCGAAGTTTTCGTAAAGATGGTTCCATTTACATGAACGCCACAGGGAACAACCCGTCGAT 878
|||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 830 CCGATCTTTTCGTAAAGATGGTTCCATTTACATGAACGCTACAGGGAACAATCCAACGAT 889
Query 879 TCACCCGCAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCTTG 938
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 890 TCATCCACAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCATG 949
Query 939 GCCGCGACTAACCGTCCGTCGCCGGAAATATAGATTTCGGATCACAAACGCTAGTAACGC 998
|||| || |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 950 GCCGAGATTAACCGTCCGCCGCCGGAAATATAGATTTCGAATCACAAACGCTAGTAACGC 1009
Query 999 AAGGTTTTTCCGGttttttttCTCCAACGGTCTCGAATTCATTGTCGTGGGTTCTGATTC 1058
|||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1010 AAGGTTCTTCCGGTTCTTCTTCTCCAACGGTCTCGACTTCATTGTCGTTGGTTCCGATTC 1069
Query 1059 AGCTTACCTAGCGAAACCAGTATCGACCAAATCAGTTCTACTTGCTCCGTCGGAGATTAT 1118
||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||| |
Sbjct 1070 CGCTTATCTAGCGAAACCAGTATCGACCAAATCTGTTCTCCTAGCTCCGTCGGAGATTGT 1129
Query 1119 CGACGT-CGTCGTTGACTTTTCAAAGTCAACATCGAAAACGGCAATTCTTGCCAACAATG 1177
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CGACGTAC-TCGTTGACTTTTCAAAGTCAACATCGAAAACGGCAATTCTTGCCAACAATG 1188
Query 1178 CACCTTATCCTTACCCGTCGGGAGATCCCGTCACGGAAGAGAACAGCAAAGTCATGAAGT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 CACCTTATCCTTACCCGTCGGGAGATCCCGTCACGGAAGAGAACAGCAAAGTCATGAAGT 1248
Query 1238 TTAAAATCAAGAACAAATCAGAAGTTGACACGTCGACTATTCCGAAGAAGCTAATTGAAT 1297
||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1249 TTATAATCAACTACAAATCAGAAGTTGACACGTCGATTATTCCGAAGAAGCTAATTGAAT 1308
Query 1298 ACCCGCCTGCTAATGTATCAACCTCCTCACGTACACGTTACATTGCTATGTTCGAGTATG 1357
|||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1309 ACCCTCCTGCTCATGTATCAACCTCCACACGTACACGTTACATTGCTATGTTCGAGTATG 1368
Query 1358 TGTCTAGCACTGACGAGCCAACACATCTATACATCAACGG-CTTGCCGTACAACGCTCCC 1416
|||| |||| |||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1369 TGTCAAGCATTGACGAGCCAACACATCTATACATCAACGGTCT-GCCTTACAACGCTCCC 1427
Query 1417 GTGACAGAAACTCCAAAAATCGGCACAAGCGAGGTGTGGGAAGTGATTAATTTGACGGAG 1476
|| || ||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 1428 GTAACCGAAACTCCAAAAATCGGCACAAGCGAGGTGTGGGAAGTGATAAACTTAACCGAG 1487
Query 1477 GATAACCATCCATTGCACATTCACTTGGGATTGTTCAAAGTATTGGAGCAAACGGCATTG 1536
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1488 GATAACCATCCGTTGCACATTCACTTGGGATTGTTTAAAGTATTGGAGCAAACGGCATTG 1547
Query 1537 GTGAATAGTGAGGAGTTCATAGACTGTATGACTAAA-GAAAACGATGCCGTCAAGTGTCA 1595
||||| ||||||||||||||||| || ||||||||| |||| |||||||||||||||| |
Sbjct 1548 GTGAAGAGTGAGGAGTTCATAGAGTGCATGACTAAAAGAAA-CGATGCCGTCAAGTGTGA 1606
Query 1596 GATTAGCAAATACGCACTAGGGAACAAGACCGCGGTGACGGTACACGAGCGGGGATGGAA 1655
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1607 GATTAGCAAATACGCACGAGGGAACAAGACCGCGGTTACGGTACACGAGCGGGGATGGAA 1666
Query 1656 AAACGTATTCAAGATGATGCCGGGGCATGTCACGAAGATCCTCGTCAGATTTTCTTACAT 1715
|||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 1667 AAACGTATTCAAGATGATGCCGGGACATGTAACGAAGATACTCGTTAGATTTTCTTACAT 1726
Query 1716 TCACTCGAACGAATCTTACTCCTTTGATGCAACTCAAGAGCCAGGCTATGTCTACCATTG 1775
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1727 TCACTCAAACGAATCTTACTCCTTTGACGCAACTCAAGAGCCAGGCTATGTTTACCACTG 1786
Query 1776 TCACATATTGGACCATGAAGACAATATGATGATGAGGCCCTTTGCAATGGTGCTATGATT 1835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1787 TCACATATTGGACCATGAAGACAATATGATGATGAGGCCCTTTGCAATGGTGCTATAATT 1846
Query 1836 CTAAAACTAAA-CAACTTATAATTACGAGTGCAGAAT 1871
||||||| ||| ||| ||| |||||||||||||||||
Sbjct 1847 CTAAAACGAAAACAATTTACAATTACGAGTGCAGAAT 1883
> AT1G23010.1 | Symbols: LPR1 | Cupredoxin superfamily protein
| chr1:8147264-8149813 FORWARD LENGTH=2068
Length=2068
Score = 1085 bits (587), Expect = 0.0
Identities = 1255/1569 (80%), Gaps = 79/1569 (5%)
Strand=Plus/Plus
Query 292 TCTCTT-AACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTGCCTGCCAC 350
|||||| || || |||||||||| || |||||||||||||||||||| |||||||| ||
Sbjct 288 TCTCTTCAA-ATCGGCATGTTCTCCACTAAATGGAAATTCCACAGAGATTTGCCTGCGAC 346
Query 351 GCCAGTGTTCGCGTATGGTACAT--C-GAGACGTGTAGCCACAGTTCCTGGACCGACAAT 407
||||||||| || || ||||||| | ||| | | || ||||||||||| ||||| ||
Sbjct 347 GCCAGTGTTTGCATACGGTACATCACGGAG-CAAG--GCAACAGTTCCTGGTCCGACGAT 403
Query 408 AGAAGCTGTTTATGGAGTCGACACATACGTGACGTGGCGAAATCACCTTCCTTTA-CATC 466
||| | || |||||||| ||||||||||| ||||||||||||||||||||| | | ||
Sbjct 404 TGAAACCGTATATGGAGTAGACACATACGTTACGTGGCGAAATCACCTTCCTAAATC-TC 462
Query 467 ATATCCTCCCTTGGGACCCAACAATCTCCCCTGCAATC-CCTAAACACGGCGGCATTCCC 525
| ||||| ||||||||||| ||||||||||| |||| | || |||||||| || |||||
Sbjct 463 ACATCCTTCCTTGGGACCCCACAATCTCCCCAGCAA-CTCCGAAACACGGTGGAATTCCT 521
Query 526 ACCGTGGTTCACTTGCACGGCGGCATCCACGAACCAACTAGCGATGGAAATGCAGATTCA 585
|| || |||||||| || || || |||||||||||||| ||||| ||||| || || |
Sbjct 522 ACGGTTGTTCACTTACATGGAGGAATCCACGAACCAACAAGCGACGGAAACGCCGACGCG 581
Query 586 TGGTTCACCGCTGGTTTCAAAGAGACAGGTTCC-AAATGGACCAAAAAGAC--TACGCAT 642
|||||||| || ||||||| ||| ||||| || ||||||||||||| ||| || |||
Sbjct 582 TGGTTCACTGCCGGTTTCAGAGAAACAGG-ACCAAAATGGACCAAAACGACGTTA--CAT 638
Query 643 TACGTTAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGCGTTGGGTTTGAC- 701
|||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 639 TACGAGAACAAGCAACAACCTGGTAACATGTGGTACCATGACCATGCCATGGGTTTGACT 698
Query 702 CAGAGTCAACCTTCTCGCCGGTTTGTTAGGTGCTTACATTCTCCGCCA-CAGCTCCGTCG 760
| |||||||||| || ||||||||| |||| || || ||||| ||||| || | |||| |
Sbjct 699 C-GAGTCAACCTCCTTGCCGGTTTGGTAGGCGCCTATATTCTTCGCCACCA-CGCCGTTG 756
Query 761 AATC-GCCTCTCCGACTACCTACCGGCCG-TGAATTTGATCGTCCTTTGGTCATCTTTGA 818
|||| ||| || | |||||||| || || ||| || || || || ||| |||| |||||
Sbjct 757 AATCTCCCTTTCAG-CTACCTACTGG-CGATGAGTTCGACCGACCGTTGATCATTTTTGA 814
Query 819 CCGAAGTTTTCGTAAAGATGGTTCCATTTACATGAACGCCACAGGGAACAACCCGTCGAT 878
|| || ||||||||||| || || ||||||||||||||||| ||||||||||| |||||
Sbjct 815 TCGTAGCTTTCGTAAAGACGGGTCAATTTACATGAACGCCACTGGGAACAACCCATCGAT 874
Query 879 TCACCCGCAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCTTG 938
||||||||| ||||| || || ||||| ||||| | || || || || || ||||| ||
Sbjct 875 TCACCCGCAGTGGCAACCGGAATATTTTGGCGATGTGATAATCGTTAATGGAAAAGCATG 934
Query 939 GCCGCGACTAACCGTCCGTCGCCGGAAATATAGATTTCGGATCACAAACGCTAGTAACGC 998
||| || ||| |||||| || ||||||| ||||| || |||| |||||| || |||||
Sbjct 935 GCCAAGATTAAACGTCCGACGTAGGAAATACAGATTCCGTATCATAAACGCAAGCAACGC 994
Query 999 AAGGTTTTTCCGGttttttttCTCCAACGGTCTCGAATTCATTGTCGTGGGTTCTGATTC 1058
||||||||| |||||| |||||||||||||| || ||||| || ||||| ||||||||
Sbjct 995 TAGGTTTTTCAAGTTTTTCTTCTCCAACGGTCTAGATTTCATCGTTGTGGGGTCTGATTC 1054
Query 1059 AGCTTACCTAG-CGAAA-CCAGT-ATCGACCAAATCAG-TTCTACTT-GCTCCGTCGGAG 1113
||| || | | | ||| || || || ||||||||| | |||| ||| |||| || ||
Sbjct 1055 AGCGTA-TTTGTC-AAAGCCGGTGAT-GACCAAATC-GATTCT-CTTATCTCCATCAGAA 1109
Query 1114 ATTATCGACGTCGTCGTTGACTTT-T-CAAAGTCAACATCGAAAACGGCAATTCTTGCCA 1171
||| | ||||| || ||||| ||| | |||| ||| | |||| ||||| | ||||| |
Sbjct 1110 ATTGTAGACGTTGTTGTTGA-TTTCTACAAA-TCACCGTCGAGAACGGTGGTGCTTGCTA 1167
Query 1172 ACAATGCACCTTATCCTTACCCGTCG-GGAGATCCCGTC-ACGGAAGAGAACAGCAAAGT 1229
| | ||||| ||||||||||| | | || ||||| ||| || ||||| || |||| ||
Sbjct 1168 ATGACGCACCATATCCTTACCC-TAGTGGTGATCCTGTCAAC-GAAGAAAATGGCAAGGT 1225
Query 1230 CATGAAGTTTAAAATCAAGAACAAATCAGAAGTTGACACGTCG-ACTATTCCGAAGAAGC 1288
||||| |||| ||||| || ||||||| | |||||| | | || ||||| |||||||
Sbjct 1226 AATGAAATTTATCATCAACAATGAATCAGAGGATGACACAT-GTACAATTCCCAAGAAGC 1284
Query 1289 TAATTGAA-TACCCGCCTGCTAATGTATCAACCTCC--TCACGTACACGTTACAT-TGCT 1344
| | | || || ||| |||| | || |||| | || || | || |||||||| | ||
Sbjct 1285 TCA-TCAATTATCCGAATGCTGACGTGTCAAACGCCGTTCTC--ACGCGTTACATCT-CT 1340
Query 1345 ATGTTCGAGTATGTGTCTAGCACTGACGAGCCAACACATCT-ATACATCAACGGCTTGCC 1403
|||| |||||||||| || | |||| |||||||| ||| | || |||| || |||||
Sbjct 1341 ATGTACGAGTATGTGAGTAACTCTGATGAGCCAACTCATTTGTTA-GTCAATGGTTTGCC 1399
Query 1404 GTA-CAACGCTCCCGTGACAGAAACTCCAAAAATC-GGCACAAGC-GAGGTGTGGGAAGT 1460
|| || |||||||| ||||||||||| |||||| || || | | ||||| ||||||||
Sbjct 1400 CTATGAA-GCTCCCGTTACAGAAACTCC-AAAATCAGGGACTA-CAGAGGTATGGGAAGT 1456
Query 1461 GATTAATTTGACGGAGGATAACCATCCATTGCACATTCACT-TGGGATTGTTCAAAGTAT 1519
||| ||||||||||| ||||||||||| || |||||||| | | ||||||||||||||
Sbjct 1457 GATAAATTTGACGGAAGATAACCATCCGTTACACATTCA-TCTAGGATTGTTCAAAGTGG 1515
Query 1520 TGGAGCAAACGGCA-T--TGG-TG-A--ATAGTGAGGAGTTCATA-GACTGTATGACTAA 1571
| |||||||||||| | ||| | | || | |||||||||| | || |||||||| ||
Sbjct 1516 TAGAGCAAACGGCATTACTGGCGGCAGGATTG-GAGGAGTTCA-AGGAGTGTATGACGAA 1573
Query 1572 AGAAAACGATGCCGTCAAGTGTCAGATTAGCAAATACGCAC-TAGGGAACAAGACCGCGG 1630
| ||||||| || ||||||||||| |||||||||||||| | | ||||| ||||| ||||
Sbjct 1574 ACAAAACGACGCGGTCAAGTGTCAAATTAGCAAATACGCTCGT-GGGAAAAAGACAGCGG 1632
Query 1631 TGACGGTACACGAGCGGGGATGGAAAAACGTATTCAAGATGATGCCGGGGCATGTCACGA 1690
|||||| ||||||| |||| ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1633 TGACGGCACACGAGAGGGGTTGGAAGAACGTATTCAAGATGATGCCGGGACATGTTACGA 1692
Query 1691 AGATCCTCGTCAGATTTTCTTACATTCACTCGAACGAATCTTACTCC-TTTGATGCAACT 1749
||| || ||| | |||||||| || ||| | || | ||||||| || || ||| | |||
Sbjct 1693 GGATACTTGTCCGCTTTTCTTATATCCACACTAATGCATCTTAC-CCATTCGATCCGACT 1751
Query 1750 CAAGAGCCAGGCTATGTCTACCATTGTCACATATTGGACCATGAAGACAATATGATGATG 1809
|| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1752 CAGGAACCGGGCTATGTCTACCATTGTCACATATTGGACCATGAGGACAATATGATGATG 1811
Query 1810 AGGCC-CTT 1817
||||| |||
Sbjct 1812 AGGCCGCTT 1820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97489458390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5