BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476238
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2294 0.0
> AT1G71060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26805651-26807183 REVERSE LENGTH=1533
Length=1533
Score = 2294 bits (1242), Expect = 0.0
Identities = 1449/1547 (94%), Gaps = 22/1547 (1%)
Strand=Plus/Plus
Query 1 ATGGTCTTCTCTCGATTCTTCAG-CTCCGCCGGAGTGAATCTCTCTCGCCGTGTCTACT- 58
||||||||||||||||||||||| | | ||||||||||||||||||| ||||| ||||
Sbjct 1 ATGGTCTTCTCTCGATTCTTCAGAGT-CACCGGAGTGAATCTCTCTCGACGTGTGTACTC 59
Query 59 TAAGAATCTCTTCTTCTTCGTCCTCAAGCTTGAGTCTCGAATCGATTCCATGGATTCATA 118
| |||||||||| |||||| || | | |||||||||||||||||||||||||||||
Sbjct 60 T-CGAATCTCTTCGTCTTCG---TC-A-C-CGAGTCTCGAATCGATTCCATGGATTCATA 112
Query 119 AAGCTTCAAATTTTACAGTTTATGGATCATTTCACGCTTCTTCTGTTGAAACCCAAGTTT 178
|||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 113 AAGCTTCAAACTTTACACTTTACGGATCATTTCACGCTTCTTCTGTTGAAACCCAAGTTT 172
Query 179 CTGCTAATGATGTTTCACAAGACGCTGATAAAATCTGCAATATTCTGTCCAAATTTACAG 238
|||||||||||| |||||||||||| || | ||||||||| ||||| ||||||| || |
Sbjct 173 CTGCTAATGATGCTTCACAAGACGCAGAGAGAATCTGCAAGATTCTCACCAAATTCACGG 232
Query 239 ATTCAAAGGTTGAAACTTTGCTGAACGAAGCTTCTGTTAAACTCTCGCCGGTAC-TAATC 297
||||||||||||||||||||||||||||||||||||||||||| || || | | |||||
Sbjct 233 ATTCAAAGGTTGAAACTTTGCTGAACGAAGCTTCTGTTAAACTTTCACCAG-CCTTAATC 291
Query 298 GAAGAAGTACTGAAGAAGCTAAGCAACGCTGGGGTTTTAGCTTTATCTGTATTCAAATGG 357
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 292 GAAGAAGTACTGAAGAAGCTAAGCAACGCTGGTGTTTTAGCTTTGTCTGTATTCAAATGG 351
Query 358 GCAGAGAATCAAAAGGGTTTCAAGCACACTACTTCAAACTACAACGCATTGATCGAATCA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GCAGAGAATCAAAAGGGTTTCAAGCACACTACTTCAAACTACAACGCATTGATCGAATCA 411
Query 418 TTAGGTAAGATCAAGCAATTCAAACTCATTTGGAATCTT-GTAGACGACATGAAA-CAAA 475
|||||||||||||| ||||||||||||||||||| | || ||||||||||||||| ||||
Sbjct 412 TTAGGTAAGATCAAACAATTCAAACTCATTTGGAGT-TTAGTAGACGACATGAAAGCAAA 470
Query 476 AGAAGCTTTTGAGCAAAGACACGTTTGCTCTCATTTCTAGACGTTACGCTAGAGCTAGGA 535
| ||||||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 471 A-AAGCTTTTGAGCAAAGAGACATTTGCTCTTATCTCTAGACGTTACGCTAGAGCTAGGA 529
Query 536 AGGTTAAAGAAGCTATAGCTGCGTTTCATAAGATGGAAGA-TTATGGGTTTAAGATGGAA 594
| |||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 530 AAGTTAAAGAAGCTATAGGTGCGTTTCATAAGATGGAAGAGTT-TGGGTTTAAGATGGAA 588
Query 595 TCAAGTGATTTCAATCGTATGCTTGATACTTTGAGCAAATCTAGAAATGTTGGAGATGCA 654
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 589 TCAAGTGATTTTAATCGTATGCTTGATACTTTGAGCAAATCTAGAAATGTTGGGGATGCA 648
Query 655 CAGAAGGTGTTCGATAAAATGAAAAAGAAAAGGTTTGAGCCTGATATTAAGTCTTATACT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CAGAAGGTGTTCGATAAAATGAAAAAGAAAAGGTTTGAGCCTGATATTAAGTCTTATACT 708
Query 715 ATTTTACTTGAAGGTTGGGGTCAGGAGTTGAATCTTTTGAGAGTTAATGAGGTTTATAGA 774
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 709 ATTCTACTTGAAGGTTGGGGTCAGGAGTTGAATCTTTTGAGAGTTGATGAGGTTAACAGA 768
Query 775 GAGATGAAAGACGAAGGTTTTGAACCGGATGTGGTTGCGTACGGTATCATTATCAATGCG 834
|||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 769 GAGATGAAAGACGAAGGTTTTGAACCGGATGTTGTCGCTTACGGTATTATTATCAATGCG 828
Query 835 CATTGCAAGGCGAAAAAGTATGATGAAGCTGTTAGATTCTTCAATGAGATGGAACAGAGG 894
|||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 829 CATTGCAAGGCGAAGAAGTATGAAGAAGCTATTAGATTCTTCAATGAGATGGAACAGAGG 888
Query 895 AATTGTAAGCCGAGTCCTCACATTTTCTGTAGTCTGATTAATGGACTGGGCTCTGAGAAG 954
||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 889 AATTGTAAGCCAAGTCCTCACATTTTCTGTAGTTTGATTAATGGACTTGGCTCTGAGAAG 948
Query 955 AAGCTGAATGATGCTCTTGAATTCTTCGAGAGATCAAAGAGTTCCGGGTTTCCTCTTGAA 1014
||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 949 AAGTTGAATGATGCTCTTGAGTTCTTTGAGAGATCAAAGAGTTCCGGGTTTCCTCTTGAA 1008
Query 1015 GCTCCTACTTACAATGCACTAGTAGGAGCTTATTGCTGGTCACAGCGAATAGAAGACGCA 1074
|| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1009 GCACCTACTTACAATGCGCTAGTAGGTGCTTATTGCTGGTCACAGCGAATGGAAGACGCA 1068
Query 1075 TTTAAAACCGTGGATGAGATGAGATCGAAAGGGATTGGCCCAAATGCTAGAACTTATGAT 1134
| |||||||| ||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 1069 TACAAAACCGTTGATGAGATGAGATTAAAAGGGGTTGGGCCAAATGCTAGAACTTATGAT 1128
Query 1135 ATAATTCTTCATCATTTGATTAGAATGCAGCGCACAAAAGAAGCCTATGAAGTTTATCAG 1194
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1129 ATAATTCTTCATCATTTGATTAGAATGCAGCGCTCGAAAGAAGCGTATGAAGTTTATCAG 1188
Query 1195 AAGATGAGTTGTGAACCGACGGTGAGTACTTACGAGATCATGGTGAGGATGTTTTGCAAC 1254
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1189 ACGATGAGTTGTGAACCGACGGTGAGTACTTACGAGATCATGGTGAGGATGTTTTGTAAC 1248
Query 1255 AAAGAGAGATTGGATATGGCGATCAAGATTTGGGACGAGATGAAAGGAGAA-GGTGTTCT 1313
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1249 AAAGAGAGATTGGATATGGCGATCAAGATTTGGGACGAGATGAAAGG-GAAAGGTGTTCT 1307
Query 1314 TCCGGGAATGCACATGTTCTCAAGTTTGATCACAGCTCTGTGCCATGAGAACAAATTAGA 1373
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TCCAGGAATGCACATGTTCTCAAGTTTGATCACAGCTCTGTGCCATGAGAACAAATTAGA 1367
Query 1374 CGAAGCTTGTGAGTATTTCAATGAAATGTTGGATGTGGGTATTAGGCCACCGGGACAAAT 1433
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1368 CGAGGCTTGTGAGTATTTCAATGAGATGTTGGATGTGGGTATTAGGCCACCGGGACATAT 1427
Query 1434 GTTTAGCCGTCTTAAACAAACGCTTCTCGATGAAGGCCGGAAAGATAAAGT-AGCGGATT 1492
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 1428 GTTTAGCCGTCTTAAACAAACACTTCTCGATGAAGGCCGGAAAGATAAAGTCA-CGGATT 1486
Query 1493 TAGCTGTGAAGATGGATAGGCTGAGGAAAACCCAACTTGTTGGCTGA 1539
| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1487 TGGTTGTAAAGATGGATAGGCTGAGGAAAACCCAACTTGTTGGCTGA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5