BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476239
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71070.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2534 0.0
> AT1G71070.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:26807188-26809504
REVERSE LENGTH=1792
Length=1792
Score = 2534 bits (1372), Expect = 0.0
Identities = 1608/1719 (94%), Gaps = 28/1719 (2%)
Strand=Plus/Plus
Query 1 CGGAGATCGAAGTTTTGTACCTGAGAACCTCGTTGTCTTCTTC-T-T-CAAAGCCTCCAA 57
||||||||||||||||| |||| |||| ||||||||||||||| | | || |||||||||
Sbjct 15 CGGAGATCGAAGTTTTGAACCTAAGAATCTCGTTGTCTTCTTCTTCTGCAGAGCCTCCAA 74
Query 58 AGTCCAAATCTTTTTGGTTACGTCTCTCAAACCCTAATCTTTATTtctcactctctctct 117
|||| ||||| ||||||||||||||||||||||| || ||||| | |||||||||| |||
Sbjct 75 AGTCTAAATC-TTTTGGTTACGTCTCTCAAACCCCAACCTTTA-TACTCACTCTCTTTCT 132
Query 118 cccactctcCATT--TTTCATTGGCTTCTTCTTGAGATCTCCTCGGGCTCTGATCCCAAT 175
|||| | || | ||||||||||||||||||||||| || |||||||||||||||
Sbjct 133 TTTTCTCT-C-TTACCTCCATTGGCTTCTTCTTGAGATCTCGTCAGGCTCTGATCCCAAT 190
Query 176 CTATGCTCGATCTCACTCACACCGAGATCTCATCTTCCTCCA-TATTTCAAAGATCCATA 234
||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 191 CTATGTTCGATCTCACTCTCACCGAGATCTCATCTTCCTCCATTTTTTCAAAGATCCATA 250
Query 235 TATGAGCTCTAAAACCACAGATTTGAATCTGTGAATCCACATATATGCTCAATCGGAGCC 294
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 251 TATGAGCTCTAAAACCACAGATTTCAATCTGTGAATCCGTATATATGCTCAATCGGAGCC 310
Query 295 AGATTCTAACAAATCAAAGGTGAAA-GAAGAAAGAAGTGAAGAACAATGGGAGCTGAAAA 353
|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 311 AGATTCTAACAAATCAAA---GAAAGGAAG-AAGAAGTGAAGAACAATGGGAGCTGAAAA 366
Query 354 GAAATGGCTTTTCACTCTCTTCTCTGTAGTATTTCTCTCAGTGTTCCTTCTCTTACTTTA 413
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 367 GAAATGGCTTTTCACACTCTTCTCTGTAGTATTCCTCTCAGTGTTCCTTCTCTTACTTTA 426
Query 414 CTCAATCTCTGCTTTTACCTCTAAACCATTCCCTTCTTCAATCCGTCACGGTGCTCATTA 473
|| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 427 TTCTATCTCTGCTTTCACCTCTAAACCATTCCCTTCTTCAATTCGTCACGGTGCTCATTA 486
Query 474 CCCACCAGCTTTCGCTTATTACATAACCGGTGGTCGTGGAGATAATGACCGGATCTTTCG 533
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 487 CCCACCTGCTTTTGCTTATTACATAACCGGTGGTCGTGGAGATAATGACCGGATCTCTCG 546
Query 534 TTTATTGCTCGCGGTTTATCATCCTAGGAATCGGTATCTTCTCCATCTGGGTGCTGAATC 593
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 547 GTTATTGCTTGCGGTTTATCATCCTAGGAATCGGTATCTTATCCATCTGGGTGCTGAAGC 606
Query 594 TACTGATGCTGAGAGGCTTGCTCTTCTCTCGGATTTGAAATCTGTTCCTGCTGTGAATGC 653
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 607 TACTGATGCAGAGAGGCTAGCTCTTCTCTCTGATTTGAAATCTGTTCCTGCTGTGAATGC 666
Query 654 TTTTGGGAATGTTGATGTTTTAGGGAAAGTTGATCGTTTGTCTGAGAATGGTGCTTCTAA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTTTGGGAATGTTGATGTTTTAGGGAAAGTTGATCGTTTGTCTGAGAATGGTGCTTCTAA 726
Query 714 GATTGCTTCTACTCTTCACGCTGTTTCTATTCTTCTTAAGCTTGATCGTACTTGGAATTG 773
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 727 GATTGCTTCTACTCTTCACGCTGTTTCTATTCTTCTTAAGCTTGATCCTACTTGGAATTG 786
Query 774 GTTTATTGAGCTTAGTGCTTTGGATTATCCTCTCATTACTCAAGATGACCTATCTCATGT 833
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 787 GTTTATTGAGCTTAGTGCTTTGGATTATCCTCTCATAACTCAAGATGACCTATCTCATGT 846
Query 834 GTTTGCCTCAGTGAACAGAAGCCTCAATTTTATTGATCACACTAGTGACCTTGCTTGGAA 893
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 847 GTTTGCCTCGGTGAACAGAAGTCTCAATTTTATTGATCACACTAGTGACCTTGCTTGGAA 906
Query 894 AGAGTCTCAGAGAATCAAGCCTATTGTTGTTGATCCAGCACTTTACTTAGCTAGAAGAAC 953
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AGAATCTCAGAGAATCAAGCCTATTGTTGTTGATCCAGCACTTTACTTAGCTAGAAGAAC 966
Query 954 TCAGCTATTCACTGCTACCGAGAAA-CGACCAACACCAGATGCATTCAAAGTCTTTACAG 1012
|||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 967 TCAGCTCTTCACTGCTACCGA-AAAGCGACCAACACCAGATGCATTCAAAGTCTTTACAG 1025
Query 1013 GCTCGCCTTGGATTGTACTGAGTAGATCTTTCCTAGAATACTGCATCCTCGGTTGGGACA 1072
||||||||||||||||||| || ||| |||||||||||||||||||| |||||||||| |
Sbjct 1026 GCTCGCCTTGGATTGTACTAAGCAGACCTTTCCTAGAATACTGCATCTTCGGTTGGGATA 1085
Query 1073 ATTTACCGAGAGTCCTTCTGATGTATTTTAACAATGTCATTCTCTCTGAAGAATGCTATT 1132
||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1086 ATTTACCAAGAATCCTTCTCATGTATTTTAACAATGTCATTCTCTCTGAAGAATGCTACT 1145
Query 1133 TCCACACAGTGATATGCAACGCACCCGAGTTCAGTAACACGCCAGTCAACGGGGACTTAC 1192
||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1146 TCCACACGGTGATATGCAACGCACCGGAGTTCAGTAACACGACAGTCAACGGGGACTTAC 1205
Query 1193 GATACATGATATGGGACAGTCCACCAAAGATGGAACCACACTTCCTTACTGTATCAGATT 1252
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||
Sbjct 1206 GATACATGATATGGGACAGTCCACCAAAAATGGAACCACATTTCCTTACTATATCGGATT 1265
Query 1253 TCGAACCAA-TGGCTCAAAGCGGAGCAGCTTTCGCCAGACAGTTCAAGAAAGACGATCCA 1311
|||| |||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1266 TCGA-CCAAATGGCTCAAAGCGGAGCAGCTTTCGCTAGACAATTCAAGAAAGATGATCCA 1324
Query 1312 GTACTCGACATGGTCGATAGAGAGATCCTGAAACGTGGGCGTTACCGTGTCACTCCTGGA 1371
|||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 1325 GTACTCGACATGGTCGATAGAGAGATCCTGAAACGTGGACGTTACAGAGTCACTCCTGGC 1384
Query 1372 GCTTGGTGCTCGAGCCACAATAGCTGGTGGACAGATCCTTGCTCAGAATGGGATGAAGTC 1431
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 1385 GCTTGGTGCTCGAGCCACAGTAGCTGGTGGACAGATCCTTGCTCGGAGTGGGATGAAGTA 1444
Query 1432 AACATTGTCAAAGCTGGACCTCAAGCTAAGAAGCTAGACGAAACAATAACGAATTTTCTT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 AACATTGTCAAAGCTGGACCTCAAGCTAAGAAGCTAGACGAAACAATAACGAATTTTCTT 1504
Query 1492 GATGATTTGAATTCACAATCGAATCAATGCAAGTGATTATACGACACACGACACGAGAAT 1551
||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1505 GATGATTTGAATTCACAATCGAATCAATGCAAGTGATTATACGACACACGAGAC-----T 1559
Query 1552 ACACTGTTTTCAGTCTCTGTAAGGTTAA-TTCTTTGGGCAACAACACAGTGGCTGATGTA 1610
||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1560 ACATTGTTTTCAGTCTCTGTAAGGTTAAATTCTTTGGGCAACAACACAGTGGCTGCTGTA 1619
Query 1611 TTTATACAAGGGGAAGGAGCA-GAGAATAGAAAGGAGAGAttttttttATCTTTCCTAGA 1669
||||||| ||| ||||||| | ||||| |||||||||| |||||| || ||||||| |||
Sbjct 1620 TTTATACGAGGAGAAGGAGAAAGAGAAGAGAAAGGAGATATTTTTATTCTCTTTCCCAGA 1679
Query 1670 TTTTGTAATTCCTTTGTTAAAGCCACTT-GAGAACTTTT 1707
||||||||||||||||||||||||| || ||||||||||
Sbjct 1680 TTTTGTAATTCCTTTGTTAAAGCCA-TTAGAGAACTTTT 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5