BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476241
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71090.1 | Symbols: | Auxin efflux carrier family protein |... 2680 0.0
> AT1G71090.1 | Symbols: | Auxin efflux carrier family protein
| chr1:26812212-26814130 FORWARD LENGTH=1919
Length=1919
Score = 2680 bits (1451), Expect = 0.0
Identities = 1775/1926 (92%), Gaps = 43/1926 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAAACTTCAAGAAACCAAATTATTGCAATCAGTAAATTTTGGCGTGGATGATACA 60
||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| ||
Sbjct 1 AAGAAGAAACTTCAAGATACAAAATTATTGCAATCAGTAGA-TTTGGCGTGGATGATGCA 59
Query 61 TCTGTCCTTGCAATCTTGTCGTCTTCTTCATTGACAAGTTCCATGTATATTGTGTCGCTC 120
|||||| | ||||||||||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct 60 TCTGTCATCGCAATCTTGTCTTCTTCTTCATTGACAAGTTCCATGTGTATTGTGTAGCTC 119
Query 121 CAGGTGTTCTTCTCTCATCGGCTTTATCTCTACCCAGCAATCTTCTTGATTGTGGTCTAA 180
|||||||| |||||| |||||||||||||||| ||| | |||||| || ||||||||||
Sbjct 120 CAGGTGTTGTTCTCTAATCGGCTTTATCTCTATCCAACCATCTTCACGACTGTGGTCTAA 179
Query 181 TCAATTT-TTGGTGTTCTTCTACTTGCTGATCCAGATTTTTCACTGCTGTGTATAGTT-T 238
| |||| || ||||||||||| || ||| | |||||| ||||||||||||||||||| |
Sbjct 180 TTGATTTGTTAGTGTTCTTCTATTTCCTGGTTCAGATTCTTCACTGCTGTGTATAGTTCT 239
Query 239 GTGTCATTCAATTGCTTGGGTTGTGGTTTAAATCACCAATTTGGTCA--TTGTT-TGTGT 295
| |||||||||| ||||||||||||||||||||||||||||||||| || || ||| |
Sbjct 240 -TCTCATTCAATTACTTGGGTTGTGGTTTAAATCACCAATTTGGTCATCTTCTTGTGTTT 298
Query 296 TTTTCTATCGTTGACTTCGAGGTTTACACAGTGAGATTAATATGTCAGGTTTCTCCGGTG 355
||||||||||||||||||||| |||||| |||||||| | ||||||||||||||| |||
Sbjct 299 TTTTCTATCGTTGACTTCGAGCTTTACATAGTGAGATCGAGATGTCAGGTTTCTCCAGTG 358
Query 356 GAAATGTTAATTCTAGGGTTGTGGATATTCTCAGTGATGTTGTGCCTTTGTTGAAGCTTA 415
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 359 GAAATGTTAATTCTAGGGTTGTGGATATACTCAGTGGTGTTGTGCCTTTGTTGAAGCTTA 418
Query 416 TCTGTTTAACCGTGATTGGTCTGCTTCTTGCTCATCCCAAGACTCAATTAGTCCCAAGAG 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTGTTTAACCGTGATTGGTCTACTTCTTGCTCATCCCAAGACTCAATTAGTCCCAAGAG 478
Query 476 CCACGTTTAGGCTCTTAAGCAAGCTTGTGTTTGCTTTGTTCTTGCCTTGTTTGATTTTCA 535
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 CCACGTTTAGGCTCTTAAGCAAGCTTGTGTTTGCTTTGTTCTTACCTTGTTTGATTTTCA 538
Query 536 CTGAGCTTGGAGAAAGCATTACTCTTGAGAACATTGTTCAATGGTGGTTTATACCGGTCA 595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 CTGAGCTTGGAGAAAGCATTACTCTTGATAACATTGTTCAATGGTGGTTTATACCGGTCA 598
Query 596 ACGTGTTACTCAGTGTGGTCGTTGGGTCTTTGATAGGATACTTGGTTGTTCTCATATGCA 655
||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 599 ACGTGTTACTCAGTGCGGTCGTTGGGTCCTTGATAGGATACTTGGTAGTCCTCATATGCA 658
Query 656 GGCCTCCTCCAGAGTTTAATAGATTCACCATTGTTATGACTGCTTTTGGAAATACTGGGA 715
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GACCACCTCCTGAGTTTAATAGATTCACCATTGTTATGACTGCTTTTGGAAATACTGGGA 718
Query 716 ATCTTTTGTTAGCTATTGTTAGCTCGGTGTGTCACACGAAGACGAACCCTTTTGGGCCGA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 ATCTTTTGTTAGCTATTGTTAGCTCGGTGTGTCACACGAAGACGAACCCTTTTGGACCGA 778
Query 776 GTTGTAATTCGAGAGGAGTTTCGTATGTATCGTTTGCGCAATGGGTTGCTGTGATTCTTG 835
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTGTAACTCGAGAGGGGTTTCGTATGTATCGTTTGCGCAATGGGTTGCTGTGATTCTTG 838
Query 836 TTTATACTGTTGTGTATCATATGATGGAGCCGCCTTTGGAGTACTATGAGGTTGTTGAGG 895
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 TTTATACTGTTGTGTATCATATGATGGAGCCGCCTTTGGAGTACTATGAGGTCGTTGAGG 898
Query 896 AAGAAGGGATTGAGATAGAGGAAG-TCAATGTGGATAATCATGATGTTAGTAGGCCACTT 954
|||||||| |||||||||||| || |||||||||| |||||||||| ||||||||| |||
Sbjct 899 AAGAAGGGGTTGAGATAGAGG-AGATCAATGTGGAGAATCATGATGCTAGTAGGCCTCTT 957
Query 955 CTAGTGGTAGCTGAATGGCCAGGGATTGAGGACAAAGAGACCGAACATTGTAAGACCCCG 1014
||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 958 CTAGTGGAAGCTGAGTGGCCAGGGATTGAGGACAAAGAGACAGAACATTGCAAGACACCT 1017
Query 1015 TTCATTGCCAGGGTCTTCAACAGCATATCAAGTGTCTCCCAGGCTTCTTTGCCTGAAGTT 1074
|| ||||| || ||||||||||||||||| ||| |||| ||| ||||||| |||||||||
Sbjct 1018 TTTATTGCTAGAGTCTTCAACAGCATATCTAGTTTCTCTCAGACTTCTTTTCCTGAAGTT 1077
Query 1075 GATTTCGGGGGAGAAAATGGAGGAGAGAGTTCCAGTCCTAGATCTATTCAGTGCTTGGCT 1134
||| ||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 1078 GATCTCGGGGGAGAATATGGAGGAGAGAGTTCCAGCCCTAGGTCTATTCAATGCTTGGCT 1137
Query 1135 GAGCCGAGAGTAATGAGGAGAATGAGAGTTGTGGCTGAACAGACTCCAGTCAAACACATA 1194
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 GAGCCTAGAGTAATGAGGAGAATAAGAGTTGTGGCTGAACAGACTCCAGTCAAACACATA 1197
Query 1195 CTCCAACCTCCAACAATCGCATCTCTATTAGCGATGATTATCGGATCAGTGCCTCAGCTG 1254
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1198 CTTCAACCTCCAACAATCGCATCTCTATTAGCGATCATTATCGGATCAGTGCCTCAGCTG 1257
Query 1255 AAAAGTGTTGTCTTTGGGTATGATGCACCACTTTCTTTCATCACAGATAGTTTGAATATA 1314
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1258 AAAAGTGTTGTCTTTGGGTATGATGCTCCGCTTTCTTTCATCACAGATAGTTTGAATATA 1317
Query 1315 ATGGGAAGCGCAATGGTTCCCTCTGTGATGCTTGTCCTAGGTGGTATGCTCTCTGAAGGA 1374
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1318 ATGGGAAGTGCAATGGTTCCCTCTGTGATGCTTGTACTTGGTGGTATGCTCTCTGAAGGA 1377
Query 1375 CCAAATGAATCAACTCTTGGCTTACGTACAACGATCGGGATAAGTGTTGCAAGACTCCTG 1434
|||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| ||
Sbjct 1378 CCAAATGAATCAACTCTTGGGTTACGTACTACGATTGGAATAAGTGTTGCAAGACTCTTG 1437
Query 1435 GTTCTTCCTTTAGTGGGAATAGGGATTGTGATGTCAGCTGATAAACTTGGTCTCATTTCC 1494
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GTGCTTCCGTTAGTGGGAATAGGGATTGTGATGTCAGCTGATAAACTTGGTCTCATTTCC 1497
Query 1495 TCAGCAGATCCAATGTTCAAGTTTGTGCTTCTTCTGCAGTATTCAACTCCGAGTGCCATT 1554
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1498 TCAGCAGATCCAATGTTCAAGTTTGTGCTTCTTTTGCAGTATTCGACTCCGAGTGCCATT 1557
Query 1555 TTACTTGGAGCCATCGCGAGTCTAAGAGGTTACGCCGTTAGAGAAGCCTCAGCACTTCTA 1614
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1558 TTACTTGGAGCCATCGCGAGTCTAAGAGGTTACGCTGTTAGAGAAGCCTCGGCACTTCTA 1617
Query 1615 TTCTGGCAACACATCTTTGCACTGTTGTCTCTTACGTTCTACATTGTCATCTTCTTCAAA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TTCTGGCAACACATCTTTGCACTGTTGTCTCTTACGTTCTACATTGTCATCTTCTTCAAA 1677
Query 1675 CTCACCGTTGAGAATACTGTCCAAGGTATGCCATAAATCT-GAGTATAAAAAAG-AAAC- 1731
||||||||||||| ||||||||||||||||| |||||||| ||| | ||| | |||
Sbjct 1678 CTCACCGTTGAGACTACTGTCCAAGGTATGCAATAAATCTAAAGT-T--AAATGTCAACT 1734
Query 1732 TTGTTTGTAAAGAATGTGATGTTATC-AATACATTGAATTTCAA-----T-TG-T-GT-- 1780
|||||||||||||||||||||||||| ||||||||||| ||||| | || | ||
Sbjct 1735 TTGTTTGTAAAGAATGTGATGTTATCAAATACATTGAACTTCAATGGTGTGTGTTGGTGA 1794
Query 1781 GTGTTGGT-GAG---T----GTT----G-GT--GGAGTTTTGTACCAACAA-TGGCATGA 1824
|||||||| ||| | || | | | ||||||||||||| || ||||||||
Sbjct 1795 GTGTTGGTGGAGTATTACCAATTCAAAGTTTAAGAAGTTTTGTACCAA-AAGTGGCATGA 1853
Query 1825 ACCGTGCACTTGCATGATCTTATTTCCTGGCGTAAATAATCTTTTAAATAGAGCATCATC 1884
||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 1854 ACCGTGCACTTGCTTGATCTTATTTCGTGGCCTAAATCATCTTTTAAATAGAGCATCATC 1913
Query 1885 GTATTC 1890
||||||
Sbjct 1914 GTATTC 1919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93573815880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5