BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476243
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2900 0.0
> AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G12400.1); Has
173 Blast hits to 169 proteins in 21 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:26818083-26821004
FORWARD LENGTH=1987
Length=1987
Score = 2900 bits (1570), Expect = 0.0
Identities = 1852/1985 (93%), Gaps = 31/1985 (2%)
Strand=Plus/Plus
Query 1 CTCTCTTCCTCACCCGCGTTTTC---GAG---C-T-TT-AACAATGGCTTCTTCTCCGAT 51
|||||||||||||| |||||||| ||| | | || |||||||||| ||||||||||
Sbjct 10 CTCTCTTCCTCACCTGCGTTTTCGTGGAGCATCTTCTTCAACAATGGCTGCTTCTCCGAT 69
Query 52 CTGACCATTTCCTGATTTGATTTTTActctctctctctcATGCCTCGAACTCG---T-T- 106
|||| ||| ||||||||||| ||| | || |||||||||||||||||||| | |
Sbjct 70 CTGATCATATCCTGATTTGA-ATTT--T-GCTATCTCTCATGCCTCGAACTCGTTTTGTC 125
Query 107 ----T--CATCC-AGTGACTGAGGAAGAAGAAGAAGATGAACTTCTTTATCCTCTCCGTC 159
| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 126 GACGTAGCATCCTAGTGACTGAGGAAGAAGAAGAAGATGAGCTTCTTTATCCTCTCCGTC 185
Query 160 GTCGTTTTCGTTGCTTTCGCTTTCTTTTCTCTTCCGCATTCCGTTGATTCATCTGTTGCC 219
|||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 186 GTCGTTTTCGTTTCTCTCGCTTTCTTCTCTCTTCCGCATTCCGTTGATTCATCTGTTTCC 245
Query 220 GCTTCACAAGATCCTCTCAAACTCATATTAGGCTCACCGAATTTTGGATCATGGAAAGGT 279
|||||||| |||||||||| |||||||||||| ||||||||||||||| |||||||||||
Sbjct 246 GCTTCACAGGATCCTCTCAGACTCATATTAGGTTCACCGAATTTTGGAACATGGAAAGGT 305
Query 280 GGAATCTCATTAGCACCAGGACCTTCATCTGATGATGTCGTCTCTGATTACCTCCTCTTA 339
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 306 GGAATCTCATTAGCACCAGGACCTGAATCTGATGATGTTGTCTCTGATTACCTCCTCTTA 365
Query 340 GCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCATGGCGGT 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 366 GCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCATGGTGGC 425
Query 400 TGGAACATCACCAATAATCACTATTGGGCTTCTGTTGGATTTACAGGTGCTCCTGGTTTC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGGAACATCACCAATAATCACTATTGGGCTTCTGTTGGATTTACAGGTGCTCCTGGTTTC 485
Query 460 ATTCTAGCTGTTATCTGGCTCTTGTCTTTTGGCTCTCTTCTTGTTGTGTATCATTGCTTC 519
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 486 ATACTAGCTGTTATCTGGCTCTTGTCTTTTGGCTCTCTTCTTGTTGTTTATCATTGCTTC 545
Query 520 AAATGGAGACTATGTGTTAAAGCTAAAGGATCATCATTCGATTCACGAAGATTCTGTTTC 579
||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 546 AAATGGAGAATATGTGATAAAGCTAAAGGATCATCATTCGATACACGAAGAATCTGTTTC 605
Query 580 ATTTTGTTGATAGTGTTTACGTGTGTTGCAGCGGTGGGATGCATTCTTTTATCTGTTGGA 639
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 606 ATTTTGTTGATTGTGTTTACATGTGTTGCAGCGGTGGGATGCATTCTTTTATCTGTTGGA 665
Query 640 CAGGATAAGTTTCATACTGAAGCTATGCGTACTCTTAAGTATGTGGTTAACCAGTCTGAC 699
|| |||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||
Sbjct 666 CAAGATAAGTTTCATACCGAAGCTATGCATACTCTTAAGTATGTTGTAAACCAGTCAGAC 725
Query 700 TACACTGTGGAGATCCTCCAGAATGTGACTCAATATCTGTCCCTCGCAAAAACGATTAAT 759
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 726 TACACTGTGGAGATCCTCCAGAATGTGACTCAATATCTGTCCCTTGCGAAAACGATTAAC 785
Query 760 GTGACAGAGATT-TCCATTCCGCCAAATGTAATGGATGAAATTGACAAGTTAAATGTCAA 818
|||||| ||||| || |||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 786 GTGACACAGATTGTC-ATTCCGTCTGATGTAATGGGTGAAATTGACAAGTTAAATGTCAA 844
Query 819 TCTGAACACTGCAGCAGTAACATTGGGAGAGAAAACACCAGATAATGCTGCTAAGATTAA 878
||| ||||||||||| |||||| ||||||||| |||| ||||||| |||||||| |||||
Sbjct 845 TCTTAACACTGCAGCTGTAACACTGGGAGAGACAACAACAGATAACGCTGCTAAAATTAA 904
Query 879 GAGAGTTGTCTATGCTGTGCGATCAGCTTTGATCACGGTCGCTACTGTGATGCTCATCCT 938
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GAGAGTTTTCTATGCTGTGCGATCAGCTTTGATCACGGTCGCTACTGTGATGCTCATCCT 964
Query 939 TTCTTTTGTTGGTCTATTGCTTTCTGTCCTCCGCCACCAACATGTTGTTCATATATTCGT 998
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TTCTTTTGTAGGTCTATTGCTTTCTGTCCTCCGCCACCAACATGTTGTTCATATATTCGT 1024
Query 999 CGTGAGTGGGTGGATACTGGTGGCTGTGACATTTGTTCTCTGTGGAGTCTTTCTGATCCT 1058
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1025 CGTGAGTGGGTGGATACTTGTGGCTGTGACATTTGTTCTTTGTGGAGTCTTTCTGATCCT 1084
Query 1059 AAACAATGCAATTTCAGATACGTGTGTAGCCATGAAGGAATGGGTTGATCATCCTCACGC 1118
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1085 AAACAATGCAATTTCTGATACGTGTGTAGCAATGAAGGAATGGGTTGATAATCCTCACGC 1144
Query 1119 AGAAACAGCTCTCAGCAGCATCCTCCCATGCGTTGATCAGCAAACAACCAACCAGACTCT 1178
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1145 AGAAACAGCTCTCAGCAGCATTCTCCCATGCGTTGATCAGCAAACAACAAACCAGACTCT 1204
Query 1179 TGCACAGAGTAAAGTTGTCATCAACAGTATCGTGACCGTTGTAAACACCTTTGTTTATGC 1238
| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1205 TTCACAGAGTAAAGTTGTTATCAACAGCATCGTGACCGTTGTAAACACCTTTGTCTATGC 1264
Query 1239 TGTTGCCAATACAAACCCATCTCCAGGTCAAGACCGCTATTACAACCAGTCTGGACCTCC 1298
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TGTTGCCAATACAAACCCAGCTCCAGGTCAAGACCGCTATTACAACCAGTCTGGACCTCC 1324
Query 1299 GATGCCTCCTTTGTGCATCCCATTTGATGCAAACATGGAAGATCGCCAGTGCTCGCCTTG 1358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GATGCCTCCTTTATGCATCCCATTTGATGCAAACATGGAAGATCGCCAGTGCTCGCCTTG 1384
Query 1359 GGAATTGTCAATAGAAAATGCATCATCGGTCTGGGAGAATTACAAATGCGAGGTTACACA 1418
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GGAACTATCAATAGAAAATGCATCATCGGTCTGGGAGAATTACAAATGCGAGGTTACACC 1444
Query 1419 ATCCGGAGTCTGCACCACTGTGGGGAGAGTAACGCCAGACACCTTTGGACAGTTGGTAGC 1478
||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1445 ATCTGGAATCTGCACCACCGTGGGGAGAGTAACGCCAGATACCTTTGGACAGTTGGTAGC 1504
Query 1479 AGCTGTGAATGAGAGCTACGCTCTTGAGCATTACACGCCTCCGTTGCTTAGCTTCCGAGA 1538
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1505 AGCTGTGAATGAGAGCTACGCTCTAGAGCATTACACGCCTCCATTGCTTAGCTTCCGAGA 1564
Query 1539 TTGCAATTTTGTTAGGGAAACATTTAAGAGTATCACCTCAGATTACTGTCCACCACTGG- 1597
|||||| ||||||||||||||||||| |||||| |||||||||||||||||||| | |
Sbjct 1565 TTGCAACTTTGTTAGGGAAACATTTATGAGTATTACCTCAGATTACTGTCCACCGTTAGT 1624
Query 1598 AGCGTAATCTGAGGATTGTGACCGCAGGACTTGGCCTGATCTCTGTGGGAGTGTTACTAT 1657
| ||||||||||||||||||| ||||||||| || |||||||| || ||||| |||||||
Sbjct 1625 A-CGTAATCTGAGGATTGTGAACGCAGGACTCGGACTGATCTCCGTAGGAGTCTTACTAT 1683
Query 1658 GTCTGGTGCTGTGGATATTCTATGCGAACCGCCCCCAAAGGGAGGAAGTGTTTGCGGATC 1717
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 GTCTGGTGCTATGGATATTCTATGCGAACCGCCCCCAAAGGGAGGAAGTGTTTGCGGATC 1743
Query 1718 CACACCCTCAA-GTAAAAGACGTTAGCTTTGGTAACGGCTTGGATAATCATCACTCAGAT 1776
||||||||||| | |||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 1744 CACACCCTCAAAG-AAAAGATGATAGCTTTGGTAACGGCTTGGATACTCATCACTCAGAT 1802
Query 1777 GACGAAACTAAGCTTTCTGTAGAATGCGTATAGTATACAGGTATAGATAAATAGAATCAG 1836
|||||| |||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1803 GACGAACCTAAGCTTTCTGTAGAATGCGTATAGTATAGAGGTATAGTTAGATAGAATCAG 1862
Query 1837 ATGTTGTATTTCATAAAGATATGAAAGAGAACAATAAACACATTTTGTAGCGTTCATGTT 1896
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1863 ATATTGTATTTCATAATGATATGAAAGAGAACAATAAAAACATTTTGTAGCGTTCATGTT 1922
Query 1897 ACATTAGAAGAAGAGGAAGAGACTAGAAGTGGAGCAAAGTTTCACTTTCTGGCTTTTGTT 1956
||| ||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1923 ACAGTAGAAGAGGAAGAAGAGACCAGAAGTGGAGCGAAGTTTCACTTTCTGGCTTTTGTT 1982
Query 1957 TTCAC 1961
|||||
Sbjct 1983 TTCAC 1987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97138054575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5