BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476244
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71120.1 | Symbols: GLIP6 | GDSL-motif lipase/hydrolase 6 | ... 1679 0.0
> AT1G71120.1 | Symbols: GLIP6 | GDSL-motif lipase/hydrolase 6
| chr1:26821072-26822420 REVERSE LENGTH=1089
Length=1089
Score = 1679 bits (909), Expect = 0.0
Identities = 1025/1083 (95%), Gaps = 0/1083 (0%)
Strand=Plus/Plus
Query 4 TCTTCTTCTTCAATGGACTTACTCATGTTTCTGCTTCTTCTAGTCTCTCCGGTTGCTCTG 63
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 7 TCTTCTTCTTCAATGGACTTACTCATGTGTCTGCTTCTTCTAATCTCTCCGGTTGTTCTG 66
Query 64 GCAAAGTCTTCTTCCACCGTCCCTGCTATCTTCACCTTTGGTGACTCAATTTTCGACGCC 123
|| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 67 GCCAAGTCTTCTTCCACCGTCCCTGCTATCTTTACCTTCGGTGACTCTATTTTTGACGCC 126
Query 124 GGAAACAACCATTACAACAAAAACTGTACAGCTCAGGCTGATTTTCCTCCTTATGGTTCT 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 127 GGAAACAACCATTACAACAAAAACTGTACCGCTCAGGCTGATTTTCCTCCTTATGGTTCT 186
Query 184 TCCTTTTTCCACCGTCCTACGGGGAGGTTCACCAACGGAAGAACTGTCGCTGACTTCATC 243
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 187 TCCTTTTTCCACCGTCCTACTGGGAGGTTCACCAACGGAAGAACCGTCGCTGACTTCATC 246
Query 244 TCGCAATTTGTAGGCCTTCCACTACAGAAACCATTCTTGGAATTGCAGATTCAAATCTTG 303
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 247 TCGGAATTTGTAGGCCTTCCATTACAGAAACCATTCTTGGAATTGCAGATTCAAATCTTG 306
Query 304 AATGGAACTTCAAACTTTTCAAATGGCATTAACTTTGCTAGTGCTGGTAGTGGTCTCTTG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 AATGGAACTTCAAACTTTTCAAATGGCATTAACTTTGCTAGTGCTGGTAGTGGTCTCTTG 366
Query 364 TTTGATACCAACAAATTTATGGGCGTGACACCGATCCAAACCCAGCTACAGCAATTCCAG 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CTTGATACCAACAAATTTATGGGCGTGACACCGATCCAAACCCAGCTACAGCAATTCCAG 426
Query 424 ACACTTGCAGAGCAGAACCTGATCGAAAAATCTATAATCCAAGAGTCTCTCTTCTTATTG 483
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 427 ACACTTGTAGAGCAAAACCTTATCGAAAAATCTATAATCCAAGAGTCTCTCTTCTTATTA 486
Query 484 GAAACTGGTTCCAACGACATCTTCAACTACTTCATCCCATTCCAAACTCCTACACTTTCT 543
||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 487 GAAACTGGTTCTAACGACATCTTCAACTACTTCCTCCCATTCCGAGCTCCTACACTTTCT 546
Query 544 CCAGACGCCTATGTGAACACAATGTTAGACCAAGTGAGCAAAACGATTGATCAGATCTAC 603
|||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 547 CCAGACGCTTATGTGAACGCAATGTTAGACCAAGTGAACAAAACGATTGATCAGATCTAC 606
Query 604 AAACTAGGTGCACGCCGCATCGCTTTCTTCTCCTTAGGTCCTGTGGGATGTGTCCCTGCA 663
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 607 AAACTAGGCGCACGCCGCATCGCTTTCTTCTCCTTAGGTCCTGTAGGTTGTGTCCCTGCA 666
Query 664 AGAGAAATGCTTCCTAATGTCCCAACAAATAAATGCTTCGGTAAGATGAATGTTATGGCA 723
|||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 667 AGAGCCATGCTTCCTAATGCCCCAACCAATAAATGCTTTGGTAAGATGAATGTTATGGCC 726
Query 724 AAGATTTTTAATACAAGACTTGAAGAGATTGTGAACATAATACCCACTAAGTACCCCGGT 783
||||| | ||||| |||||||||||| || ||||||||||| |||||||||||||| ||
Sbjct 727 AAGATGTATAATAAAAGACTTGAAGATATAGTGAACATAATCCCCACTAAGTACCCTGGA 786
Query 784 GCCATTGCGGTGTTTGGAGCTGTGTATGGTATAACTCACAGATTCCAAACCAACCCTGCC 843
||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||
Sbjct 787 GCCATTGCGGTGTTTGGAGCTGTATATGGTATCACTCACAGATTTCAAACCTACCCTGCC 846
Query 844 CGTTACGGGTTTACCGATGTGTCGAACGCGTGTTGTGGGAACGGGACACTGGGAGGATTG 903
|||||||||||| | ||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 847 CGTTACGGGTTTTCGGATGTTTCAAACGCGTGTTGTGGGAACGGTACACTGGGAGGATTG 906
Query 904 ATGCAGTGTGGAAGAGAAGGATACAAGATTTGCAATAACCCAAATGAGTTTTTGTTTTGG 963
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 907 ATGCAGTGTGGAAGAGAAGGATACAAGATTTGCAATAACCCAAATGAGTTTCTGTTTTGG 966
Query 964 GATTTTTATCATCCCACAGAACGCACTTACCATCTCATGTCAAAAGCTTTATGGAACGGA 1023
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 967 GATTTTTATCATCCCACAGAACACACTTACCGTCTCATGTCAAAAGCTTTATGGAATGGA 1026
Query 1024 AACAAAAACCATATCAGACCGTTTAATCTCATGGCTCTTGCCACCACCAACATCACATTT 1083
|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct 1027 AACAAAAACCATATCAGACCATTTAATCTCATGGCTCTTGCCACCAACAAGATCACATTT 1086
Query 1084 TAA 1086
|||
Sbjct 1087 TAA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5