BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476245
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71130.1 | Symbols: | Integrase-type DNA-binding superfamil... 739 0.0
> AT1G71130.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:26822788-26823530 FORWARD LENGTH=743
Length=743
Score = 739 bits (400), Expect = 0.0
Identities = 542/606 (89%), Gaps = 27/606 (4%)
Strand=Plus/Plus
Query 1 ATTCTGAAAGAATAAAAACATATTC-TTCTCCCAAATGCCTTCCTTTTTAGA-GGAGACG 58
||||||||||||||||||||||||| ||||| ||||||| |||| ||||| | |||||||
Sbjct 1 ATTCTGAAAGAATAAAAACATATTCTTTCTCTCAAATGCTTTCC-TTTTA-ATGGAGACG 58
Query 59 GAGACGAAACCCTAATTTCCTCAAATTCACTATGAAGCGTATTATCAGAATCTCATTCAC 118
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 59 AAGACGGAACCCTAATTTCCGCAAATTCACTATGAAGCGTATTATCAGAATCTCATTCAC 118
Query 119 CGACGCAGAAGCCACCGATTCTTCTAGCGACGAAGACACGGAGGAACGTGAAGGAGCTTC 178
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 119 CGACGCAGAAGCCACCGATTCTTCTAGCGACGAAGACACGGAGGAGCGTGGAGGAGCATC 178
Query 179 CCAGACTCGCCGCCGTGGGAAACGCCTCGTTAAAGAGATCGTAATTGA----TCC--TT- 231
||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 179 CCAGACTCGGCGCCGTGGGAAACGCCTCGTTAAAGAGATCGTAATCGATCCTTCCGATTC 238
Query 232 --CCGATAAACTCGATGTCTGCAAGACACGGTTCAAAATCAGGATTCCGGCGGAATTTCT 289
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 239 CGCCGATAAACTCGATGTCTGCAAAACACGGTTCAAAATCAGGATCCCGGCGGAATTTCT 298
Query 290 CAAGACGGCG---TCGAAGAAGAAAT-TCCGTGGAGTGAGGCAGAGGCCGTGGGGGAAGT 345
|||||||||| || ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 299 CAAGACGGCGAAAACGGAGAAGAAATAT-CGTGGAGTGAGGCAGAGGCCGTGGGGGAAGT 357
Query 346 GGGTGGCGGAGATTAGATGTGGCGGAGGAGCTTGTAAGGGACGACGTGGTCGTCTTTGGC 405
||||||||||||| |||||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct 358 GGGTGGCGGAGATCAGATGTGGAAGAGGAGCTTGTAAAGGACGACGTGATCGTCTCTGGC 417
Query 406 TGGGAACTTTTAACACTGCCGAGGAAGCTGCTCTTGCTTATGATAACGCCGCGATTCAGC 465
|||| |||||||||||||| |||||||||||||| |||||||||||||| | ||| |||
Sbjct 418 TGGGTACTTTTAACACTGCTGAGGAAGCTGCTCTAGCTTATGATAACGCTTCAATTAAGC 477
Query 466 TGATTGGACCTCACGCGCCGACCAATTTCGGTTTTCCGGCGGAGAATCATGAGGATAAGA 525
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 478 TGATTGGACCTCACGCGCCGACCAATTTTGGTTTGCCGGCGGAGAATCAAGAGGATAAGA 537
Query 526 CGGTGGT-GGA--T---G---TTGCTCGAGGCGCGTGAAGTGGAGTTGGTGGTTCAGTTC 576
||||| | ||| | | ||||| |||||||||||||||| |||||| || ||||
Sbjct 538 CGGTGATTGGAGCTTCTGAGGTTGCTAGAGGCGCGTGAAGTGGGGTTGGTAATTTAGTTG 597
Query 577 TTAGCA 582
||||||
Sbjct 598 TTAGCA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5