BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476247
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1493 0.0
AT1G22970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 628 3e-179
> AT1G71150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G22970.1);
Has 105 Blast hits to 103 proteins in 41 species: Archae -
0; Bacteria - 2; Metazoa - 42; Fungi - 6; Plants - 48; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:26827146-26828674
FORWARD LENGTH=1258
Length=1258
Score = 1493 bits (808), Expect = 0.0
Identities = 1054/1166 (90%), Gaps = 44/1166 (4%)
Strand=Plus/Plus
Query 1 GACTTGAGGCGTCGAGAGGTGAAGGAAGACGGAGATGGCGAAACCAAAAAGAGACGAATT 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 10 GACTTGAGGCGTCGAGAGGTGAAGGAAGACGGAGATGGCGAAACCAAACATAGACGAATT 69
Query 61 GAATCAAATCCTTACTAGTTATCACAATACCATCAATGATACTCTCCAGTTGTTTGAGCA 120
|||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 70 GAATCAAATCCTTACTAGTTATCAAAACACCATCAACGATACTCTCCAGTTGTTCGAGCA 129
Query 121 AGTTCCGTCTCCGACACAAGACAAATTA-AGCTGGAACGATGTCCTTCAGATTTCTGATC 179
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 130 AGTTCCGTCTCCGACACAAGACAAATTATA-TTGGAACGATGTCCTTCAGATTTCTGATC 188
Query 180 ATCTCTCCAAACAAGCTACTATAGTGGGAATGCTATGGA-C--TGGAGAACCTCCAAAAT 236
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 189 ATCTCTCCAAACAAGCTACTATAGTGGGAATGCTATGGATCACTGGAGAACCTCCAAAAG 248
Query 237 CTGAAGCACTAAAGGAAACTATGGA-GTCATACTTCAACG-TGCTTCAAGGATTTTTGTT 294
|||||||| | ||||| |||||||| | |||||||||||| | ||||||||||||||| |
Sbjct 249 CTGAAGCAATGAAGGAGACTATGGAAG-CATACTTCAACGCT-CTTCAAGGATTTTTGCT 306
Query 295 ACATTGTCATGGAAGCATGGTTGGTGCCGGGACTACACTTTCTTC-ATCCATACACGCCT 353
|||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||| |
Sbjct 307 GCATTGTCATGGAAGCATGGTTGGTGCTGGGACTACACTCTCTTCGA-CCATACACGCTT 365
Query 354 CTGCGAAGCAAATTGTTGATTCTAGCTTCAGATTGTTGCAGGGTTCTGTGTCCCTATACG 413
||| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 366 CTGTGAAGCAAATTGTTGATTCCAGCTTCAGATTGTTGCAGGGTTCTGTTTCCTTATACG 425
Query 414 AGGGATCATATGGGAATGGAAGGAAGCCGTCGATTCCGCAGCTTGCTGGAGCAGTGTGGG 473
|||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct 426 AGGGATCATATGAGAAAGGAAGGAAGCCCACGATTCCGCAGCTTGCAGGAGCAGTGTGGG 485
Query 474 AAGCATGCTCCAATTTAAAGAAGGTGCCTGAAACAAACATCAAAGCGATTGTAAGGGCGA 533
||||||| || ||||||||||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 486 AAGCATGTTCTAATTTAAAGAACGTGCCTGAAACAAACATCAAAGCGATTGGAAGAGCGA 545
Query 534 TTGCACATGTAGCTGTTTCCATGAAGGATGTTCTTAGGGAGATGAAAGAACTGAAGCCAG 593
| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 546 TGGCACATGTAGCTGTTTCTATGAAGGATGTGCTTAGGGAGATGAAAGAACTGAAGCCTG 605
Query 594 CTTGTTCTTCACCCGAGCATGATGCTTCTGAAAACCTGGAAAGCGAGACTCAAAACTCAG 653
||| ||||||||| || ||| ||| || | | | | | | | | ||| |
Sbjct 606 CTTCTTCTTCACCTGATCATAATG-TT-T-----C--G-A---C-A-A---A---CTCGG 644
Query 654 ATGAAGATGATGATGGTTTAGGCGATGA-CTTGTCTCCTGAAGAATTTGAAGTTGCTAAA 712
|||| |||||| | | ||||||||| || ||||||||||||||||||||||||||||
Sbjct 645 ATGACGATGAT--T--T--AGGCGATGAACT-GTCTCCTGAAGAATTTGAAGTTGCTAAA 697
Query 713 ATGGTAGTAGATATTGTGTCTGAGACGCTCGTGGTTATAAAAGAGCTTATCCGTGCTTTC 772
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 698 ATGGTAGCAGATATTGTGTCTGAGACGCTCGTTGTTATAAAAGAGCTTATCCGTGCTATC 757
Query 773 ACAGGCATGATCAAGCTGGAGAATCCAAATGATAATAGTGAGTTTGTGGACTC-TCTTGA 831
||| ||||||||||||||||||||||||| |||||||||||||||||||| || | ||||
Sbjct 758 ACATGCATGATCAAGCTGGAGAATCCAAAGGATAATAGTGAGTTTGTGGATTCGT-TTGA 816
Query 832 GAAGTTACTGAAGTTGTGTCAAGGCATTGGAGTACAGATTGATGAGCTTGGAGCCTGTGT 891
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 817 GAAGTTACTGAAGTTGTGTCAAGGAATTGGTGTACAGATTGATGAGCTTGGAGCTTGTGT 876
Query 892 TTATCCACCGCAAGAGTTTGGTCTCATGAAACAAACAGTGGAGAAAAT-ATGGGAAACTA 950
||| || |||||||||||||||||||||||||||||||||||||| || | |||||| ||
Sbjct 877 TTACCCGCCGCAAGAGTTTGGTCTCATGAAACAAACAGTGGAGAACATGA-GGGAAAGTA 935
Query 951 TTGGTGAGATTGAGACTGGTGTTAAGAGTTTCGAGAATTCTTCATCAGAAGCTTTATCGG 1010
|||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||| |
Sbjct 936 TTGGTGAGATTGAGTCTGATGTTAAGAGTTCCAAGAATTCTTCATCAGAAGCTTTATCAG 995
Query 1011 GATCATGCAGAAGGCTGCAGGGTTTGATTGAACATATGGAAACCGAGCTGGGCACAAGAA 1070
|||||||||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||
Sbjct 996 GATCATGCAGAAGGCTGCAGAGTTTGATTGAACATATGGTAACCGAGTTGGACACAAGAA 1055
Query 1071 TAGAAGCTGAAGTAGTTTGCAAAATGCAGAATGTTAATCTTTAGCACTTAGAAAAGTTTG 1130
| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1056 TCGAAGCTGAAGTAGTTTACAAAATGCAGAATGTTACTCTTTAGCACTGAGAAAAGTTTG 1115
Query 1131 GATTTAAGGTTCTTACTTCTTAACTT 1156
| |||||||||||||||||||||||
Sbjct 1116 AACTTAAGGTTCTTACTTCTTAACTT 1141
> AT1G22970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G71150.1);
Has 134 Blast hits to 132 proteins in 48 species: Archae -
0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses
- 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:8130716-8132208
REVERSE LENGTH=1207
Length=1207
Score = 628 bits (340), Expect = 3e-179
Identities = 835/1065 (78%), Gaps = 69/1065 (6%)
Strand=Plus/Plus
Query 85 CAATACCATCAATGATACTCTCCAGTTGTTTGA-GCAAGTTCCGTCTCCGACACAAGACA 143
||| |||||| | || || ||||||||||| || | || | ||||| ||| || |
Sbjct 60 CAACACCATCTACGAAACCCTCCAGTTGTTCGATGGAA-CAGCTTCTCCTACAGTGGA-A 117
Query 144 A-A-TTAAGCTGGAACGATGTCCTTCAGATTTCTGATCATCTCTCCAAACAAGCTACTAT 201
| | |||| ||||||||||| |||||||| |||||||| ||||| |||||||| || ||
Sbjct 118 AGAGTTAA-TTGGAACGATGTTCTTCAGATGTCTGATCACCTCTCTAAACAAGCCACCAT 176
Query 202 AGTGGGAATGCTATGGACTGGAGAACCTCCAAAATCTGAAGCAC-TAAAGGAAACTATGG 260
||||||||||||||||||||||||| |||||||| |||| ||| |||| || |||||||
Sbjct 177 AGTGGGAATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAA-GAGACTATGG 235
Query 261 AGTCATACTTCAACGTGCTTCAAGGATTTTTGTTAC-ATTGTCATGGAAGCA-TGGTTGG 318
|||| |||||||| | |||||||| ||||| | | ||| |||||||||| | ||||
Sbjct 236 AGTCTTACTTCAATGCCCTTCAAGGGTTTTTACT-CTGTTGCCATGGAAGCACT-CTTGG 293
Query 319 TGCCGGGA-CTACACTTTCTTC-ATCCATACACGCCTCTGCGAAGCAAATTGTTGATTCT 376
|| | ||| |||| |||||||| || |||||| | |||| ||||||||||||||||||
Sbjct 294 TG-CTGGACCTACGCTTTCTTCAAT-CATACATGTTTCTGTTAAGCAAATTGTTGATTCT 351
Query 377 AGCTTCAGATTGTTGCAGGGTTCTGTGTCCCTATACGAGGGATCATATGGGAATGGA-AG 435
|||||||||||||||||||||||||| || |||||||||||||| |||| ||| ||| |
Sbjct 352 AGCTTCAGATTGTTGCAGGGTTCTGTTTCTCTATACGAGGGATCGTATGAGAA-GGATAA 410
Query 436 GAAGCCGTCGATTCCGCAGCT-TGCTGGAGCAGTGTGGGAAGCATGCTCCAATTTAAAGA 494
||||||||| ||||||||||| | | |||| || ||||||||||| |||| ||| ||||
Sbjct 411 GAAGCCGTCTATTCCGCAGCTCT-CGGGAGTGGTTTGGGAAGCATGTTCCAGTTTCAAGA 469
Query 495 AGGTGCCTGAAACAAACATCAAAGCGATT-GTAAGGGCGATTGCACATGTAGCTGTTTCC 553
|||| |||| ||||||||| | |||||| || || || ||| |||| || || ||||||
Sbjct 470 AGGTTCCTGCAACAAACATTACTGCGATTGGT-AGAGCTATTACACAGGTTGCGGTTTCC 528
Query 554 ATGAAGGATGTTCTTAGGGAGATGAAAGAACTGAAGCCAGCTTGTTCTTCACCCGAGCAT 613
|||||||||||||||||||||||||||||| |||||||||| ||| ||| | | || |
Sbjct 529 ATGAAGGATGTTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTTATCTGAATGT 588
Query 614 GATGCTTCTGAAAACCTGGAA-A-G-CGAGACTCAAAACTCAGATGAAGATGATGATGGT 670
|| || |||| | | || | | | || | | | ||||| |||||||| | |
Sbjct 589 GAGGCATCTGGTGA--T--AATATGTCTAG--TGA----T--GATGATGATGATGACGAT 636
Query 671 TTAGGCGATGACTTGTCTCCTGAAGAATTTGAAGTTGCTAAAATGGT-AGTAGATATTGT 729
||||||||||| ||||||||||||||| | |||||||||| |||||| | | || |||||
Sbjct 637 TTAGGCGATGATTTGTCTCCTGAAGAAATGGAAGTTGCTACAATGGTTACT-GAGATTGT 695
Query 730 GTCTGAGACGCTCGTGGTTATAAAAGAGCTTATCCGTGCTT-TCACAGGCATGATCAAGC 788
||||| || || |||| |||||||| || || || | || |||| || ||||| |||
Sbjct 696 CTCTGAAACTATCATGGTGATAAAAGAACTCATTCGAG-TTATCACTGGTATGATTAAGA 754
Query 789 TGGAGAATCCAAATGATAATAGTGAGTTTGTGGACTCTCTTGAGAAGTTACTGAAGTTGT 848
||||||||||||| |||||||||| ||||||||| || ||||||||| |||||||| |||
Sbjct 755 TGGAGAATCCAAAGGATAATAGTGGGTTTGTGGAGTCGCTTGAGAAGCTACTGAAGCTGT 814
Query 849 GTCAAGGCATTGGAGTACAGATTGATGAGCTTGGAGCCTGTGTTTATCCACCGCAAGAGT 908
||||||| | ||| ||||| || ||||||||||| || ||||| ||||||||||| |||
Sbjct 815 GTCAAGGAACTGGTGTACAAATCGATGAGCTTGGTGCTTGTGTCTATCCACCGCAGGAGA 874
Query 909 TTGGTCTC-ATGAAACAAACAGTGGAGAAAATAT-GGGAAA-CTATTGGTGAGATT-GAG 964
| | | ||||| ||||||||| || ||| |||||| ||| | || ||| ||
Sbjct 875 T-GAACAAGATGAAGCAAACAGTGAAGGTTATACAGGGAAATCTA--GACGA-ATTTGAA 930
Query 965 ACTGGTGTTAAGAGTTTCGA-GAATTCTTCATCAGAAG-CTTTATCGGGATCATGCAG-A 1021
|||| ||| || |||| || || ||||||| || | |||| |||||| | ||| | |
Sbjct 931 ACTGAAGTTGAGCGTTT-GAAGAGTTCTTCA---GACGGCTTT-TCGGGAGCTTGCGGGA 985
Query 1022 AGGCTGCAGGGTTTGATTGAA-CATATGGAAACCGAGCTGGGCACAAGAA-TAGAAGCTG 1079
|| |||| | | ||||| ||||||||||| || ||| | |||| | |||||||
Sbjct 986 AG-CTGC-GAAACTCCTTGAAACATATGGAAACTGAATTGGATAAAAGATGT-GAAGCTG 1042
Query 1080 A---AGTAGTTTGCAAAATGCAGAATGTTAATCTTTAGCACTTAG 1121
| ||||||| | ||| |||||||||||| |||| | || ||||
Sbjct 1043 AGCTAGTAGTT-G-AAA-TGCAGAATGTTACTCTTGA-CAGTTAG 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5