BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476248
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71160.1 | Symbols: KCS7 | 3-ketoacyl-CoA synthase 7 | chr1:... 2374 0.0
> AT1G71160.1 | Symbols: KCS7 | 3-ketoacyl-CoA synthase 7 | chr1:26828701-26830208
REVERSE LENGTH=1508
Length=1508
Score = 2374 bits (1285), Expect = 0.0
Identities = 1435/1509 (95%), Gaps = 4/1509 (0%)
Strand=Plus/Plus
Query 1 ATCTTGCTTCTCTCTTTTCTCATTTTTGGATTCTAGAATATGGAATCGAGCTTTCATTTC 60
||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATCTTGCTTCTCTCTTTTCCCA-GTTTGGTTTCTAGAATATGGAATCGAGCTTTCATTTC 59
Query 61 ATCAATCAAGCTCTCCTTATCACTCAGACTTTTATGACCTTTCCCCATTTCCTGGCAGCA 120
|||||| |||||||||||||||||||||| ||||| || |||| ||| ||||||| ||||
Sbjct 60 ATCAATGAAGCTCTCCTTATCACTCAGACCTTTATCACTTTTCACCAATTCCTGGTAGCA 119
Query 121 TCGGCCTGTGTTCTCATAGCGGTTTTTGGTTACTATTTCTTTAAACCAAGATGTATTATA 180
|| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 120 TCAGCCTGTGTTCTCATAGCTGTCTTTGGTTACTATTTCTTCAAACCAAGATGTATTATA 179
Query 181 TACCTCATTGATTTCTCATGTTATCAACCTCCTGACTTCTTGCGAGCTCCAGTCTCTAAT 240
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 TACCTCATTGACTTCTCATGTTATCAACCTCCTGACTTCTTGCGAGCTCCGGTCTCTAAT 239
Query 241 TTCATTGAGCATCTTACGATTTCCGGTGTTTTTGATCAAGAAAGTCTTGATCTCCAGCAA 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCATTGAGCATCTTACCATTTCCGGTGTTTTTGATCAAGAAAGTCTTGATCTCCAGCAG 299
Query 301 AAGATTTTAGAGCGGTCAGGGATTAGTGATGACGCGAGCGTGCCTGCGACAGTCCATGAG 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGATTTTAGAGCGATCAGGGATTAGTGATGACGCGAGCGTGCCTGCGACAGTCCATGAG 359
Query 361 ATTCCACCAAACGCTTCTCTCTCTGCAGCTAGAGAAGAAACTCATGAGATCCTCTTCGCT 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTCCACCAAACGCTTCTATCTCTGCAGCTAGAGAAGAAACTCATGAGATCCTCTTCGCT 419
Query 421 ATTGTTGAAGACCTTTTCTCAAAGCATGAGATAGATCCTAAGAGTATTGACATCCTTGTG 480
||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 ATTGTCCAAGATCTTTTCTCAAAGCATGAGATAGATCCAAAGAGTATTGACATCCTTGTG 479
Query 481 TCTAACTGCAGCCTATTCTGTCCTTCTCCATCCATAACCTCTATGATCATAAACAGGTTT 540
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 480 TCTAACTGCAGCCTATTCTGTCCTTCTCCATCCATAACTTCTATGATCATTAACAAGTTT 539
Query 541 GGCATGAGGAGCAACGTAAAGAGCTTCAGCTTGAGCGGAATGGGCTGCAGTGCCGGGATT 600
||||||||||| || ||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 540 GGCATGAGGAGTGACATAAAGAGCTTCAGTTTGAGCGGTATGGGCTGCAGCGCCGGGATT 599
Query 601 CTTTCGGTTAATCTTGTGAAAGATCTTATGAAGATTCATGGTGACTCTTTGGCCCTAGTG 660
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 CTTTCGGTTAATCTCGTAAAAGATCTTATGAAGATTCATGGTGATTCTTTGGCCCTAGTG 659
Query 661 TTGAGTATGGAAGCTGTGAGTCCAAATGGTTACAGAGGGAAGTGTAAGTCAATGCTCATT 720
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 TTGAGTATGGAAGCTGTTAGTCCAAATGGTTACAGAGGGAAGTGTAAGTCGATGCTCATT 719
Query 721 GCTAACACTATCTTCAGAATGGGTGGGGCTGCGATTCTTATTTCCAACAGGAAGCAAGAT 780
|| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 720 GCCAACACTATCTTCAGAATGGGTGGGGCTGCGATTCTTCTTTCCAATAGGAAGCAAGAT 779
Query 781 TCGCATAAGGCGAAATACAAACTCCAGCACATTATCAGAACTCATGTCGGTTCAGACACT 840
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 780 TCGCATAAGGCGAAATACAAACTCCAGCATATTATCAGAACTCATGTTGGTTCAGACACT 839
Query 841 GAATCCTACGAGAGTGTAATGCAGCAAGTTGATGAAGAAGGAAAAGTGGGAGTAGCATTG 900
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAATCGTACGAGAGTGTAATGCAGCAAGTTGATGAAGAAGGAAAAGTGGGAGTAGCATTG 899
Query 901 TCCAAGCAGCTTGTGAGGGTGGCATCAAAGGCCTTAAAGATCAACGTGGTGGAGTTAGGC 960
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 900 TCCAAGCAGCTTGTGAGGGTAGCATCAAAGGCCTTAAAGATCAACGTGGTGCAGTTAGGC 959
Query 961 CCTCGGGTCCTACCTTATTCAGAGCAGCTCAAATACATAATCTCATTCATCAAAAGAAAA 1020
||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 CCTCGAGTGCTACCTTATTCAGAGCAGCTCAAATACATAATCTCATTCATCCAAAGAAAA 1019
Query 1021 TGGGGAATGCACAAGGAGATATACACACCCAACTTTAAGAAAGCTTTTGAGCATTTCTGT 1080
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1020 TGGGGAATGCACAAGGAGATATACACACCAAACTTCAAGAAAGCTTTTGAGCATTTCTGT 1079
Query 1081 ATACATGCCGGAGGAAGGGCGATAATCGAGGGCGTGGAGAAGCATCTGAAGCTGGAAAAG 1140
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1080 ATACATGCCGGAGGAAGGGCGATAATTGAAGGCGTGGAGAAGCATCTGAAGCTGGACAAG 1139
Query 1141 GAAGACGTAGAAGCTTCAAGGTCAACTCTGTACCGTTATGGGAACACATCTTCGTCTTCA 1200
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1140 GAAGACGTAGAAGCTTCAAGGTCAACTCTATATCGTTATGGGAACACATCTTCGTCTTCG 1199
Query 1201 CTGTGGTATGAGCTGCAATACCTGGAAGCAAAAGGTAGAATGAAAAAGGGAGATAAAGTA 1260
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1200 TTGTGGTATGAGCTGCAATACCTGGAAGCAAAAGGTAGAATGAAAATGGGAGATAAAGTA 1259
Query 1261 TGGCAGATCGGGTTTGGAAGTGGCTTTAAAGCAAACAGTGCTGTCTGGAAATGCATTTCT 1320
|||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1260 TGGCAGATTGGGTTTGGAAGTGGCTTTAAGGCTAACAGTGCTGTCTGGAAATGCATCTCC 1319
Query 1321 GAGATCGATTCAAGAGACAGGAATGCATGGTCTGATCGAATCCATTTGTATCCGGTCTGT 1380
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1320 GAGATCGATTCAAGAGGCAGGAATGCATGGTCTGATCGAATCCATTTGTATCCTGTCTGT 1379
Query 1381 GGAGATGCTTCAAGTGCATTGAGGACAGAGCTCCTTTCTTGACATTGATT-CGCTGCTCC 1439
|||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 1380 GGAGATACTTCAAGTGCATTGAAGACAGAGCTTCTTTCTTGACATTGATTTCGCTGCTCT 1439
Query 1440 ATAGAATAGTTTATACA-TTCCTTCGTATTCTCTCTGGTTTGCTCTTAAGCTGATTCATG 1498
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ATAGAATAGTTTAT-CAATTCCTTCGTATTCTCTCTGGTTTGCTCTTAAGCTGATTCATG 1498
Query 1499 CATTGTAGG 1507
|||||||||
Sbjct 1499 CATTGTAGG 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74347007145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5