BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476250
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 | ... 1351 0.0
AT1G71180.1 | Symbols: | 6-phosphogluconate dehydrogenase fami... 171 2e-41
> AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18
| chr1:26833406-26835032 REVERSE LENGTH=1087
Length=1087
Score = 1351 bits (731), Expect = 0.0
Identities = 848/905 (94%), Gaps = 5/905 (1%)
Strand=Plus/Plus
Query 15 TCTCTCT-AAGAAGTAGAAG--GAAGACGATGAAGAAGCGAACGATGTACGCATGGGGCT 71
||||||| ||| || ||||| |||||||||||||||||||||||||| ||| ||||| |
Sbjct 22 TCTCTCTGAAGTAGAAGAAGAAGAAGACGATGAAGAAGCGAACGATGTCCGCGTGGGGAT 81
Query 72 CGGCGATTGTAATCTTCGTAGTTCTTATGATCGTCACTCCCACCATCCCTCAATCTCAGG 131
|||||||| |||||||| || | |||||||||||||||||||| ||||||||||||||||
Sbjct 82 CGGCGATTTTAATCTTCATAATACTTATGATCGTCACTCCCACAATCCCTCAATCTCAGG 141
Query 132 CTTACCACAATTTCGCCGATCAACGCTCCTTCTTCGGGATTCCGAATGCTTTAAACGTCA 191
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 142 CTTACCACAATTTCGCCGATCAACGCTCCTTCCTCGGGATTCCAAATTTTTTAAACGTCA 201
Query 192 TCTCCAATTTCCCTTTCCTCATCATCGGCTTTATCGGTCTCATCCTCTGCTTTTACCCAG 251
||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 202 TCTCCAACTTCCCTTTCCTCATCATCGGCCTTATTGGTCTTATCCTCTGCTTTTACCCAG 261
Query 252 AAGATTACTTCAGCTTTAGTTTGCGAGGTGAGAAAATAGGATGGACTTGCTTTTACGTTG 311
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 262 AAGATTACTTTAGCTTTAGTTTGCGAGGTGAGAAAATAGGATGGACTTGCTTTTACATCG 321
Query 312 GTGTGGCTTCTGTTGCTTTTGGATCTTCTTACTATCATCTTCACCCAAATGATGCTACTC 371
|||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 322 GTGTAGCTGCTGTTGCTTTTGGATCTTCTTACTATCATCTTCACCCAAACGATGCTACTC 381
Query 372 TCCTCTGGGATCGTCTTCCCATGACTATTGCATTCACATCAATCATGGCTATATTTGTAA 431
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 382 TCCTCTGGGATCGTCTTCCCATGACTATTGCTTTCACATCAATCATGGCTATATTTGTAA 441
Query 432 TCGAAAGGGTTGATGAGCATAAGGGTACTTACTCCATTGTTCCTTTGCTTCTAGCTGGTC 491
|||| ||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 442 TCGAGAGGATTGATGAGCATAAGGGTACTTACTCCATTGCTCCTTTACTTCTTGCTGGTC 501
Query 492 TTGTTAGCATTTTGTATTGGAGGTTTTTCGATGACCTTAGGCCATATGCTTTAGTCCAGT 551
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 502 TTGTTAGCATTTTGTATTGGAGGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGT 561
Query 552 TTGTTCCTTGCATTGTGATTCCGTTGATGGCTATCTTATTGCCTCCAATGTATACTCATT 611
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 562 TTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATT 621
Query 612 CTACGTATTGGCTTTGGGCTGCAGGATTTTATCTCTTAGCCAAGGTGGAAGAAGCTGCGG 671
| || |||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 622 CCACTTATTGGCTATGGGCTGCAGGGTTCTATCTCTTAGCCAAGGTGGAAGAAGCTGCGG 681
Query 672 ATAAGCCTATATATAGCTGGACACATCATATTATTAGTGGGCACTCTCTGAAGCATTTGT 731
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 682 ATAAGCCTATATATAGCTGGACTCATCATATTATTAGTGGGCATTCTCTGAAGCATCTGT 741
Query 732 GTGCCGCTATGGTCCCCGTCTTCCTTTCCCTCATGCTTGCGAAAAGAACCGTTCAAACTG 791
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 742 GTGCCGCTATGGTCCCTGTCTTCCTTACCCTCATGCTTGCGAAAAGAACCGTTCAAACTG 801
Query 792 AGAGGATTAGCTTGTATAAGACATGGAAGATAGGATCCGAGAAAGATA-GGTTTGAGTAT 850
|||||||||||||||||||||||||||||| |||||||||| |||| | |||| ||| ||
Sbjct 802 AGAGGATTAGCTTGTATAAGACATGGAAGAAAGGATCCGAGGAAGA-ACGGTTCGAGCAT 860
Query 851 AGCTACTCCAACGTTGCAGTTGAAGAGACTCGGTAGGTTATTTTGGTGACTCGTATAATG 910
|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||
Sbjct 861 AGCTACTCCAACGTTGCAGTCGAAGAGACTCGGTAGATTATTTTGTTGACTCGTAAAATG 920
Query 911 TAAGA 915
|||||
Sbjct 921 TAAGA 925
> AT1G71180.1 | Symbols: | 6-phosphogluconate dehydrogenase family
protein | chr1:26832335-26833709 FORWARD LENGTH=1375
Length=1375
Score = 171 bits (92), Expect = 2e-41
Identities = 113/123 (92%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 794 AGGATTAGCTTGTATAAGACATGGAAGATAGGATCCGAGAAAGATA-GGTTTGAGTATAG 852
|||||||||||||||||||||||||||| |||||||||| |||| | |||| ||| ||||
Sbjct 1355 AGGATTAGCTTGTATAAGACATGGAAGAAAGGATCCGAGGAAGA-ACGGTTCGAGCATAG 1297
Query 853 CTACTCCAACGTTGCAGTTGAAGAGACTCGGTAGGTTATTTTGGTGACTCGTATAATGTA 912
|||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 1296 CTACTCCAACGTTGCAGTCGAAGAGACTCGGTAGATTATTTTGTTGACTCGTAAAATGTA 1237
Query 913 AGA 915
|||
Sbjct 1236 AGA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5