BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476255
Length=2672
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71240.1 | Symbols: | Plant protein of unknown function (DU... 4193 0.0
> AT1G71240.1 | Symbols: | Plant protein of unknown function (DUF639)
| chr1:26855430-26859741 FORWARD LENGTH=2676
Length=2676
Score = 4193 bits (2270), Expect = 0.0
Identities = 2554/2687 (95%), Gaps = 36/2687 (1%)
Strand=Plus/Plus
Query 1 GGTGTTTTGCTATTGTACGCCTC--TCTCTCCAACGC-----TTTTTTCAGCTACAGACA 53
||||||||||||||||||||||| ||||||||| || |||||||||||||||| |
Sbjct 1 GGTGTTTTGCTATTGTACGCCTCTTTCTCTCCAAAGCTTTTTTTTTTTCAGCTACAGAAA 60
Query 54 TGGCGCAGAGAGTCGGAGGATTGAAAAGATTGAAACTTTCTTCTGCAACTCCAGAATTTC 113
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TGGCGCAGAGAGTCGGAGCATTGAAAAGATTGAAACTTTCTTCTGCAACTCCAGATTTTC 120
Query 114 CTATTGTTTTCCGTTGTGATGGAGCTCGTGTTCATCGACGTTGCTCTTTCTCGAGAAATT 173
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 121 CTATTGGTTTCCGTTGTGATGGAGTTCGTGTTCATCGACGCTGCTCTTTCTCCAGAAATT 180
Query 174 GTTCTTCTAATCGAAAGCCAAGACTCCGAATTGTTGCTCAGAAGAAATGGAAATTGAACG 233
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGCTTCTAATCGAAAGCCAAGACTCCGAATTGTTGCTCAGAAGAAATGGAAATTGAACG 240
Query 234 ATATCGACCCAAATGCAGTACAAGAACGATTTAGT-AGGTGGGTGTCTAAATCACAGAAA 292
|||||||| |||||| |||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 241 ATATCGACACAAATGTTGTACAAGAACGATTTAGTCA-GTGGGTGTCGAAATCACAGAAA 299
Query 293 ATTCTGAGTGATGTAACATCTCCGTTGAAGAAAAAGAGTCAGAGTCTCAAAAAGGTTGAT 352
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 300 ATTCTGAGTGATGTAACATCTCCATTGAAGAAAAAGAGTCAGAGTCTCAAAAAGATTGAT 359
Query 353 CTTGAGGATCAACAAGATTTTGAAGACTTGGAGGAACTTCTTACAGTTGAACAAACAGTT 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 CTTGAGGATCAACAAGATTTTGAAGACTTGGAGGAACTTCTTACAGTTGAACAAACTGTT 419
Query 413 CGAAGTGATACACCAAAAGGATCTCTTTCTTTTGATGCTATTATCTCCATCGAGCAGTTT 472
|||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct 420 CGAAGTGATACACCAAAAGGGTTTCTTTCTTTTGATGCTATTATCTCCATTGAACAGTTT 479
Query 473 AGCAGCAGGATGAATGGAATAACTGGGAAGAAAATGCAGGATATATTTGAAACACTTGTT 532
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 480 AGTAGCAGGATGAATGGAATCACTGGGAAGAAAATGCAGGATATATTTGAAACAATTGTT 539
Query 533 TCCCCAGTTTTATCTACCGATGCTCGATATC-TGGTGGAGTATTGCTGTTTCAGGTTTTT 591
|| |||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||
Sbjct 540 TCTCCAGCTTTATCTACTGATGCCCGGTA-CTTGGTGGAGTATTGCTGTTTCAGGTTTTT 598
Query 592 ATCGAGGGATAGCTCGGAGTTTCATCCGTGTCTTAAGGAACCTGCATTCCAGAGGC-TAG 650
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 599 ATCGAGGGATAGCTCGGAGTTTCATCCGTGTCTCAAGGAACCTGCATTCCAGAGGCTTA- 657
Query 651 TATTCATCACAATGCTCGCGTGGGCGAATCCATATTGTAAAGAAAGAAATGCACGCAATG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TATTCATCACAATGCTCGCGTGGGCGAATCCATATTGTAAAGAAAGAAATGCACGCAATG 717
Query 711 ATGCCTCAGGAAAACCTTCTTTTCAGGGACGGTTTGTAGGTGAAAAAGCATTTGTTCGTA 770
||||||||||||||||||||||||||||||| ||| | || ||| | |||||| ||||||
Sbjct 718 ATGCCTCAGGAAAACCTTCTTTTCAGGGACGATTTATTGGGGAAGAGGCATTTATTCGTA 777
Query 771 TTGCTCCAGCAATTTCAGGCTTGGCTGATAGGGCTACTGTACATAACCTTTTCAAGGCTC 830
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGCTCCAGCTATTTCAGGCTTGGCTGATAGGGCTACTGTACATAACCTTTTCAAGGCTC 837
Query 831 TAGCTGCTGCCACTGATCAAAAAGGCATTTCTTTGGAGATTTGGCTTGCTTACATCCAGG 890
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TAGCTACTGCCACTGATCAAAAAGGCATTTCTTTGGAGATTTGGCTTGCTTACATCCAGG 897
Query 891 AACTTGTCAAAATACACGAAGGACGGAAGTCACACCAGACTACAGACTTTCCAAAGTTGT 950
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 898 AACTTGTCAAAATACACGAGGGACGGAAGTCACACCAGACTACAGACTTTCCGCAGTTGT 957
Query 951 TATCGGAGAGACTTTTATGCATGGCCTCTAACAGGAAAGGACCTGTTTTAAAGTGGGAGA 1010
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 958 CATCGGAGAGACTTTTATGCATGGCCGCCAACAGGAAAGGACCTGTTTTAAAGTGGGAGA 1017
Query 1011 ATAACGTTGCATGGCCTGGAAAACTTACTCTAACTGATAAAGCTCTCTATTTTGAGCCAG 1070
||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 1018 ATAACGTTGCATGGCCTGGAAAACTTACTTTAACTGATAAAGCCCTCTATTTCGAGCCAG 1077
Query 1071 TTGACTTAAAGGGAAGTAAAGGGGTCTTGAGACTTGATCTCGCAGGGGACAAGTCAACTG 1130
||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1078 TTGACATAAAAGGAAGTAAAGGGGTCTTGAGACTTGATCTCGCTGGAGACAAGTCAACAG 1137
Query 1131 TGGAGAAAGCGAAAGTGGGGCCTCTAGGG-TTTTCTCTCTTTGATTCTGCAGTTTCTGTT 1189
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1138 TGGAGAAAGCGAAAGTGGGGCCTCT-GGGCTTTTCTCTCTTTGATTCTGCAGTTTCTGTT 1196
Query 1190 TCGTCCGGCCCTGGGTTGGCCACTTGGGTTCTGGAGTTCGTTGACCTAGGAGGTGAACTT 1249
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1197 TCATCCGGCCCCGGGTTGGCCACTTGGGTTCTGGAGTTCGTTGACCTTGGAGGAGAACTT 1256
Query 1250 AGACGAGATGTTTGGCATGCAATTATTAGTGAAGTTATAGCGTTGCACAAATTTTTACGA 1309
||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 1257 AGACGAGATGTTTGGCATGCAATTATTAGTGAAGTTATAGCATTGCACACATTTCTACGA 1316
Query 1310 GAATTTGGGCCAGAAGAGGATGATAAGTCGCTGTATCAAGTGTTTGGTGCAAAGAAGGGT 1369
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAATTTGGGCCAGGAGAGGGTGATAAGTCGCTGTATCAAGTGTTTGGTGCAAAGAAGGGT 1376
Query 1370 AAGGAAAAGGCAGTTGCAAGTGCATCTAACTGTATTGCAAGACTTCAAGCTCTTCAATAT 1429
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AAGGAAAAAGCAATTGCAAGTGCATCTAACTGTATTGCAAGACTTCAAGCTCTTCAATAT 1436
Query 1430 ATGCGGAATTTGCCTGATGATCCTATCAAAGTAGTTCAGTTCTCTTTTCTTCAACAAGTA 1489
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 ATGCGGAATTTGCCTGATGATCCTATCAAACTAGTTCAGTTCTCTTTTCTTCAACAAGTA 1496
Query 1490 GCCTATGGTGACATCGTGTGTCAAACTTTAGCTGTAAATTTTTGGGGTGGACCACTATTG 1549
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1497 GCCTATGGTGACATCGTGTGTCAAACTTTAGCCGTAAATTTTTGGGGTGGACCACTATTG 1556
Query 1550 ACCAAAATTGCAGACACGGTCTACAAACGAGGTGATATTGCCAGGGCTTCCAGAGAGTCC 1609
|||||| || |||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1557 ACCAAAGTTTCAGACA------A-A--CGAGGTGATATTGCCAGGGCTTCCAGAGAGTCC 1607
Query 1610 TATGAAACTTTTGATAACGTGTCTGATCTAGATGGAAGTGTCTACTTGAAAAGGTGGATG 1669
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1608 TATGAAACTTTTGATAACGTGTCTGATCTAGATGGAAGTGTTTACTTGAAAAGGTGGATG 1667
Query 1670 AGATCTCCCTCCTGGGGTTCAACTGCATCCATTAACTTCTGGAAAAACTCTTCTCTAAGA 1729
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1668 AGATCTCCTTCCTGGGGTTCAACTGCATCCATGAACTTCTGGAAAAACTCTTCTCTAAGA 1727
Query 1730 CAAGGCTTAGTTCTGAGCAAACACCTTGCAGTTGCTGATCTCACACTTGTAGAGAGAGCA 1789
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 1728 CAAGGCTTAGTTCTGAGCAAACACCTTGCGGTTGCTGATCTTACACTTGTAGAGAGGGCA 1787
Query 1790 GCAGAAACATGTAGACAAAAATATAAGGTGGTAGAAAAAACTCAAGCCACAATTGATGCT 1849
|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1788 ACAGAAACATGTAGACAAAAATACAAGGTGGTCGAAAAAACTCAAGCCACTATTGATGCT 1847
Query 1850 GCAACCATCAAAGGGATACCTAGTAACATTGATCTCTTTAAGGAACTCATTCTGCCACTG 1909
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1848 GCAACTATCAAAGGGATACCTAGTAACATTGACCTCTTTAAGGAACTCATTCTACCACTG 1907
Query 1910 AGTATAACTGCCACAAAGTTTGAGAAACTCAGGTGCTGGGAGGAGCCTTACATGACGGTC 1969
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 AGTATAACTGCCACAGAGTTTGAGAAACTCAGGTGCTGGGAGGAGCCTTACATGACGGTC 1967
Query 1970 TCTTTTCTAGCAGTTGCATCAACGATAATTTTCAGGAACCTTTTGCAGTACGTTTTTCCT 2029
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1968 TCTTTTCTAGCATTTGCATCAACGATAATTTTCAGGAACCTTTTGCAGTACGTTCTTCCC 2027
Query 2030 GTGTCTTTGATATTTTTGGCTACTGGGATGCTTACGTTGAAGGGACTCAGACGACAAGGC 2089
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2028 GTGTCTTTGATATTTTTGGCAACTGGGATGCTTACGTTGAAGGGACTCAGACGACAAGGC 2087
Query 2090 CGTCTAGGAAGATTGTTTGGAATAGTTACCATTCGAGATCAGCCATCTTCAAATACTATT 2149
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 2088 CGTCTAGGAAGATTGTTTGGAATAATTAGCATTCGAGATCAGCCATCTTCAAATACTATT 2147
Query 2150 CAAAAAATTATTGCTGTAAAAGAAGCCATGCAAGATCTGGAGAGCTATCTCCAAAAGGTG 2209
|||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2148 CAAAAAATAATTGCTGTCAAAGACGCCATGCAAAATCTGGAGAGCTATCTCCAAAAGGTG 2207
Query 2210 AATGTAGTGCTTCTAAAACTACGGACAATTGTATTATCTGGTCATCCTCAGATAACTACT 2269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 AATGTAGTGCTTCTAAAACTACGGACAATTGTATTATCTGGTCATCCTCAGATAACTACT 2267
Query 2270 GAAGTAGCACTGGTTTTGCTATCTATTGCAACGGTTCTAGTCATTGTCCCTTTCAAGTAT 2329
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 GAAGTAGCACTGGCTATGCTATCTATTGCAACGGTTCTAGTCATTGTCCCTTTCAAGTAT 2327
Query 2330 GTTCTGGCTTTTGTTCTCTACGATCAATTTACTCGGGAGCTCGAGTTCCGGAAAGAAATG 2389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 GTTCTGGCTTTTGTTCTCTACGATCAATTTACTCGGGAGCTCGAGTTCCGGAAAGAAATG 2387
Query 2390 GTCAAGAAATTTAATGCTTTCTTACGGGAACGTTGGGAGATGGTACCGGCAGCTCCTGTC 2449
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2388 GTCAAGAAATTTAATGCTTTCTTACGGGAACGTTGGGAGATGGTACCAGCAGCTCCTGTC 2447
Query 2450 ATTGTTTTACCGTTTGT-AAGTGAAGAGTCTACACCAGCAACTCAGGAAAACAAGCAGCT 2508
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2448 ATTGTTTTACCGTTTGTTAA-TGAAGAGTCTACACCAGCAACTCAGGAAAACAAGCAGCT 2506
Query 2509 CAGAAAACAAACACAGAGA--TGATTGATAAAGAGTGCCAAAATTTGTATAATCTAGTGG 2566
|||||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 2507 CAGAAAACCAACACCGAGAGGTGATTGATAAAAAGTGCCAAA-TTTGTATAATCTAGTGG 2565
Query 2567 CAG-GTGCATGTTTTAGATACACTAGAAGCTCAAGAAGGAACAAATATCAAATTGTAGTT 2625
| | |||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 2566 C-GTGTGCATGTTTTA-A--C--TAGAAGCTCAAGAAGGAACAAATATCAAATTGTAGTT 2619
Query 2626 GACAATGATTCATTAAATGTATATGAAAAGTAGTATAGATGTTAGTT 2672
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2620 GACAATGATTCATTAAATGTATATGAAAAGTAGTATAGATGTTAGTT 2666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132691564235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5