BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476263
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24670.2 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1917 0.0
> AT5G24670.2 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr5:8447954-8451078 FORWARD LENGTH=1800
Length=1800
Score = 1917 bits (1038), Expect = 0.0
Identities = 1226/1312 (93%), Gaps = 32/1312 (2%)
Strand=Plus/Plus
Query 104 GTCTCTGTGTCTT-TTGCTT-GAGCAAAGCT-T-TAGCG-T-GAGTTAATAAG-TAATAG 156
||||||||||||| |||||| |||| ||||| | |||| | || ||| || ||| |
Sbjct 492 GTCTCTGTGTCTTGTTGCTTGGAGC-AAGCTCTCCAGCGCTCAAG--AAT-AGATAA-A- 545
Query 157 AGAAAGATTATGGATTCAGATGCATGGGAAATCATCCATATACCTGAAAAGCCTGCATTG 216
| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 546 ATAAA-ATTATGGATTCAGATGCATGGGAAATTATCCATATACCTGAAAAGCCTTCATTG 604
Query 217 TCACCTGACCATCAGCCCACTGTAAAGGTATATGCGAGTCTAATCAAACCCAAATTTGCC 276
||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||
Sbjct 605 TCACCTGACCATCAGCCCACTGTGAAGGTATATGCTAGCCTAATCAAACCCAGATTTGCC 664
Query 277 AATACGATAGTCAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGCCATGTTAAA 336
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 665 AATACGATAGTGAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGTCATGTTAAA 724
Query 337 AGGGTGAAGAAGAAGATTCTTCCAGA-T---C------G-C-GGTGAAACTCAGTTGACT 384
|||||||||||||||||||| ||||| | | | | ||||||||||||||||||
Sbjct 725 AGGGTGAAGAAGAAGATTCTGCCAGATTGCGCTTATTGGACAGGTGAAACTCAGTTGACT 784
Query 385 GTCATCTTATGTCTAGCACCTGAGCACCACGATC-GTTTGAACAATATGCCACCTGATGT 443
||||||||||||||||||||||||||| |||||| | |||| | ||||||||||||||
Sbjct 785 GTCATCTTATGTCTAGCACCTGAGCACAACGATCAG-TTGAGTGACATGCCACCTGATGT 843
Query 444 GCAGAAACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGC 503
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GCAGAGACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGC 903
Query 504 TGCGGTATCAAAAGAAGAGTGGGAAGAACAGAGTAAGATATGGCCAACTTCTTTTCATCC 563
||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 904 TGCGGTATCCAAAGAAGAGTGGGAAGAACAAAGTAAGATATGGCCTACTTCATTTCATCC 963
Query 564 CCCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGATACACAATCGATCTG 623
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 964 ACCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTG 1023
Query 624 CAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATAAACCACTTGTAAATGC 683
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1024 CAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGC 1083
Query 684 TGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATA 1143
Query 744 TGCATCATCTGCTCCTCGCGACAAT-ACTAGCGCAGGGACCAGGCCCTTCAAGGAAACAG 802
|||||||||||||||||| ||| || |||||||||| ||||||||||||| |||||||||
Sbjct 1144 TGCATCATCTGCTCCTCGTGAC-ATGACTAGCGCAGAGACCAGGCCCTTCGAGGAAACAG 1202
Query 803 GGGAAATATGCTTAAATGGCATACTTGAAAAACAGAATGGTTCATTGTCTGCTGTTGCTT 862
|||||||||| ||||||| || ||||||||||||||||||||||||||||||| || |||
Sbjct 1203 GGGAAATATGTTTAAATGACACACTTGAAAAACAGAATGGTTCATTGTCTGCTCTTTCTT 1262
Query 863 GTCTAAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAATGGC 922
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1263 GTCTGAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAGTGGC 1322
Query 923 ATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCTTCTTCGGCCAGAGATAGACATC 982
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 1323 ATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCCTCTTCTGCCAGAGATAGAAATC 1382
Query 983 TGTTTCCCAATTCATCCGAGAGTTTTCG-TCTGGATCATGTTCAGCCCTCAAATACAGAT 1041
||||||||||| ||||| ||| |||| | || ||||||||||| ||||||||||||||||
Sbjct 1383 TGTTTCCCAATCCATCCAAGA-TTTTTGATCAGGATCATGTTCCGCCCTCAAATACAGAT 1441
Query 1042 TCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAATTGACAGTGGA 1101
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1442 TCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAATGACAGCAGA 1501
Query 1102 GAAGAGACTCTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGATATT 1161
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1502 GAAGAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATT 1561
Query 1162 TTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAA 1621
Query 1222 CGAATTTTCTATGCTTTTCCAAACCCCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTT 1281
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1622 CGGATTTTCTATGCTTTTCCAAACACCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTT 1681
Query 1282 CAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGAC 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 CAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGAC 1741
Query 1342 GCACTTAGACAAATGACCATGGTCTAATGCATTGTTGTAGTCGATCGATAAT 1393
||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1742 GCACTTAGACAAATGACCACGGTCTAATGCATTGTTGTAGTCGATTGATAAT 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74397207690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5