BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476263 Length=1508 Score E Sequences producing significant alignments: (Bits) Value AT5G24670.2 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1917 0.0 > AT5G24670.2 | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr5:8447954-8451078 FORWARD LENGTH=1800 Length=1800 Score = 1917 bits (1038), Expect = 0.0 Identities = 1226/1312 (93%), Gaps = 32/1312 (2%) Strand=Plus/Plus Query 104 GTCTCTGTGTCTT-TTGCTT-GAGCAAAGCT-T-TAGCG-T-GAGTTAATAAG-TAATAG 156 ||||||||||||| |||||| |||| ||||| | |||| | || ||| || ||| | Sbjct 492 GTCTCTGTGTCTTGTTGCTTGGAGC-AAGCTCTCCAGCGCTCAAG--AAT-AGATAA-A- 545 Query 157 AGAAAGATTATGGATTCAGATGCATGGGAAATCATCCATATACCTGAAAAGCCTGCATTG 216 | ||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 546 ATAAA-ATTATGGATTCAGATGCATGGGAAATTATCCATATACCTGAAAAGCCTTCATTG 604 Query 217 TCACCTGACCATCAGCCCACTGTAAAGGTATATGCGAGTCTAATCAAACCCAAATTTGCC 276 ||||||||||||||||||||||| ||||||||||| || ||||||||||||| ||||||| Sbjct 605 TCACCTGACCATCAGCCCACTGTGAAGGTATATGCTAGCCTAATCAAACCCAGATTTGCC 664 Query 277 AATACGATAGTCAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGCCATGTTAAA 336 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 665 AATACGATAGTGAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGTCATGTTAAA 724 Query 337 AGGGTGAAGAAGAAGATTCTTCCAGA-T---C------G-C-GGTGAAACTCAGTTGACT 384 |||||||||||||||||||| ||||| | | | | |||||||||||||||||| Sbjct 725 AGGGTGAAGAAGAAGATTCTGCCAGATTGCGCTTATTGGACAGGTGAAACTCAGTTGACT 784 Query 385 GTCATCTTATGTCTAGCACCTGAGCACCACGATC-GTTTGAACAATATGCCACCTGATGT 443 ||||||||||||||||||||||||||| |||||| | |||| | |||||||||||||| Sbjct 785 GTCATCTTATGTCTAGCACCTGAGCACAACGATCAG-TTGAGTGACATGCCACCTGATGT 843 Query 444 GCAGAAACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGC 503 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 844 GCAGAGACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGC 903 Query 504 TGCGGTATCAAAAGAAGAGTGGGAAGAACAGAGTAAGATATGGCCAACTTCTTTTCATCC 563 ||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 904 TGCGGTATCCAAAGAAGAGTGGGAAGAACAAAGTAAGATATGGCCTACTTCATTTCATCC 963 Query 564 CCCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGATACACAATCGATCTG 623 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 964 ACCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTG 1023 Query 624 CAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATAAACCACTTGTAAATGC 683 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 1024 CAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGC 1083 Query 684 TGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATA 743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1084 TGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATA 1143 Query 744 TGCATCATCTGCTCCTCGCGACAAT-ACTAGCGCAGGGACCAGGCCCTTCAAGGAAACAG 802 |||||||||||||||||| ||| || |||||||||| ||||||||||||| ||||||||| Sbjct 1144 TGCATCATCTGCTCCTCGTGAC-ATGACTAGCGCAGAGACCAGGCCCTTCGAGGAAACAG 1202 Query 803 GGGAAATATGCTTAAATGGCATACTTGAAAAACAGAATGGTTCATTGTCTGCTGTTGCTT 862 |||||||||| ||||||| || ||||||||||||||||||||||||||||||| || ||| Sbjct 1203 GGGAAATATGTTTAAATGACACACTTGAAAAACAGAATGGTTCATTGTCTGCTCTTTCTT 1262 Query 863 GTCTAAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAATGGC 922 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1263 GTCTGAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAGTGGC 1322 Query 923 ATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCTTCTTCGGCCAGAGATAGACATC 982 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| Sbjct 1323 ATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCCTCTTCTGCCAGAGATAGAAATC 1382 Query 983 TGTTTCCCAATTCATCCGAGAGTTTTCG-TCTGGATCATGTTCAGCCCTCAAATACAGAT 1041 ||||||||||| ||||| ||| |||| | || ||||||||||| |||||||||||||||| Sbjct 1383 TGTTTCCCAATCCATCCAAGA-TTTTTGATCAGGATCATGTTCCGCCCTCAAATACAGAT 1441 Query 1042 TCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAATTGACAGTGGA 1101 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1442 TCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAATGACAGCAGA 1501 Query 1102 GAAGAGACTCTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGATATT 1161 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1502 GAAGAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATT 1561 Query 1162 TTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAA 1221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1562 TTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAA 1621 Query 1222 CGAATTTTCTATGCTTTTCCAAACCCCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTT 1281 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1622 CGGATTTTCTATGCTTTTCCAAACACCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTT 1681 Query 1282 CAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGAC 1341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1682 CAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGAC 1741 Query 1342 GCACTTAGACAAATGACCATGGTCTAATGCATTGTTGTAGTCGATCGATAAT 1393 ||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1742 GCACTTAGACAAATGACCACGGTCTAATGCATTGTTGTAGTCGATTGATAAT 1793 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74397207690 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5