BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476265
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13630.1 | Symbols: | unknown protein; Has 21 Blast hits to... 928 0.0
> AT3G13630.1 | Symbols: | unknown protein; Has 21 Blast hits
to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:4456954-4458134 FORWARD LENGTH=811
Length=811
Score = 928 bits (502), Expect = 0.0
Identities = 593/636 (93%), Gaps = 10/636 (2%)
Strand=Plus/Plus
Query 1 AAAATCTTGTTTGTCTCTTTGTTGTACTAGAAAGAAAATGGAAGGTGGCGCTGAGGATCT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 AAAATCTTGTTTGTGTCTTTGTTGTACTAGAAAGAAAATGGAAGGTGGCGCTGAGGATCT 107
Query 61 GAGTGTTGAGATTGTTGGTCTATTGGAAACGGCTTATGAGAGGCGTGAGC-CGAT-GACC 118
||||| |||||||||||||||||| ||||| |||||||||||| |||| | |||| || |
Sbjct 108 GAGTGCTGAGATTGTTGGTCTATTAGAAACTGCTTATGAGAGGAGTGA-CTCGATGGA-C 165
Query 119 AAAATCCGTAAACAGCTTGAAAGAATGTCAGAGACTTTGGCCGAAGCTGTGCCTCACTCA 178
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 166 AAAATCCGTAATCAGCTTGAAAGAATGTCGGAGACTTTGGCCGAATCTGTGCCTCACTCA 225
Query 179 AAATATGCGGAGGCCATTGTGAAAGGAATGCTTCTTGCTGTTCAAAGACGTGCAAACCTA 238
||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 226 AAATACGCGGAGGCCATTGTGAAGGGAATGCTTCTTGCTGTTCGAAGACGTGTAAACCTA 285
Query 239 AACGTGCTCCTTAGCATCCAAGAAACCATCGATCAGGTTTTTGATACATATGGTCCTATC 298
|||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 286 AACGAGCGCCTTAGCATCCAAGAAACCATCGATTTGGTTTTTGATGCATATGGTCCTATC 345
Query 299 CTTATTCAATATGCCACCAGCAAAACTACCCAAATCCAAATCATAGAGTCTGTGGAGAAG 358
||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 346 CTTATTCCATATGCCACCAGCAACACTACACAAATCCAAATCATAGAGTCTGTGGAGAAG 405
Query 359 ATATGTCTTGAACCTCAGTCACCATTTTTCCCT-GTTTTTGGTCAT-ATAATCCAGACCT 416
||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||
Sbjct 406 ATATGTCTTGAACCTCAGTCACC-TTTTTCCCCCGTTTTTGGT-ATTATAATCCAGACCT 463
Query 417 TGTCACGCCATTGTGTAAACGTGGAAGCCATTGTTGATTGGGAAGAGCGTAGGAAAGAAG 476
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||
Sbjct 464 TGTCACGCCATTGTGTAAATGTGGAAGCCATTGTTGATTGGGAAAAGCGTAGGAAAGCAG 523
Query 477 CAAGAGAGAGA-GGAATTCTGTCTCCACAAGAGATGAATCTTCTGAGGAATATGGAAAAT 535
|||||||| || |||| |||||||| ||||||||||| ||||||| ||||||||||| ||
Sbjct 524 CAAGAGAG-GAAGGAACTCTGTCTCAACAAGAGATGACTCTTCTGTGGAATATGGAACAT 582
Query 536 ACCCAAAGTGGTCCTACCGGTGGCATCCTTGAAGGATTTGAGATTGGAAAAGGAAGCCAG 595
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 583 ACCCAAATTGGTCCCACCGGTGGCATCCTTGAAGGATATGAGATTGGAAAAGGAAGCCAG 642
Query 596 GACGCTCGAGACATGGGCCTCTAAGTCCATTCACGT 631
|| |||||||||||||||||||||||||||||||||
Sbjct 643 GATGCTCGAGACATGGGCCTCTAAGTCCATTCACGT 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5