BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476269
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71380.1 | Symbols: ATGH9B3, ATCEL3, CEL3 | cellulase 3 | ch... 2538 0.0
> AT1G71380.1 | Symbols: ATGH9B3, ATCEL3, CEL3 | cellulase 3 |
chr1:26899784-26901789 REVERSE LENGTH=1700
Length=1700
Score = 2538 bits (1374), Expect = 0.0
Identities = 1585/1686 (94%), Gaps = 17/1686 (1%)
Strand=Plus/Plus
Query 1 TCAAACCTCAAAAGCAATTAAGTTCTGTGT-TTGGACA-ATGACTTCTCCTTTCTTCTTT 58
||||||||||||||||||| || ||| ||| || | | |||||||||| ||||||||||
Sbjct 4 TCAAACCTCAAAAGCAATTTAGCTCTCTGTCTT-CA-AGATGACTTCTCTTTTCTTCTTT 61
Query 59 GTTTTCCTTTTCTCGTCTCTTCTCATAAGCAATGTTGATGCCAACCCAAATTACAAAGAA 118
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 62 GTTCTCCTTTTCTCGTCTCTTCTCATAAGCAATGGCGATGCCAACCCAAATTACAAAGAA 121
Query 119 GCTCTCTCCAAGTCATTGCTTTTCTTCCAAGGTCAGCGATCCGGTCCTCTTCCTAGAGGC 178
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 122 GCTCTCTCCAAGTCATTGCTCTTCTTCCAAGGTCAGCGATCTGGTCCTCTTCCTAGAGGC 181
Query 179 CAACAACTCTCCTGGAGGGCTAGCTCCGGCCTTTCCGATGGCTCTGCTGCTCATGTGGAC 238
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 182 CAACAAATTTCCTGGAGGGCTAGCTCTGGCCTTTCCGATGGCTCTGCTGCTCATGTGGAC 241
Query 239 TTAACCGGTGGGTACTATGACGCAGGAGACAACGTCAAGTTCAATTTCCCAATGGCGTTT 298
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 242 TTAACCGGCGGGTACTATGACGCAGGAGACAACGTCAAGTTCAATTTACCAATGGCGTTT 301
Query 299 ACAACCACAATGCTCTCATGGAGCGCACTGGAATACGGTAAGCGGATGGGTCCTGAGCTG 358
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 302 ACCACCACAATGCTCTCATGGAGCGCACTGGAATACGGTAAACGGATGGGTCCTGAGCTG 361
Query 359 GAAAATGCACGAGTGAACATCCGTTGGGCCACAGATTATCTGCTGAAATGTGCTAGAGCC 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 362 GAAAATGCACGTGTGAACATCCGTTGGGCCACAGATTATCTGCTGAAATGTGCCAGAGCC 421
Query 419 ACTCCCGGAAAGCTTTATGTTGGGGTAGGAGATCCTAATGTTGATCACAAATGCTGGGAA 478
|| || || ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 422 ACGCCGGGGAAGCTTTATGTCGGTGTAGGAGATCCTAATGTTGATCACAAATGCTGGGAA 481
Query 479 CGGCCTGAGGACATGGACACACCTCGTACAGTTTACTCTGTATCCCCTTCTAACCCTGGT 538
|||||||| |||||||||||||| ||||||||||||||||||||| |||| || ||||||
Sbjct 482 CGGCCTGAAGACATGGACACACCACGTACAGTTTACTCTGTATCCGCTTCCAATCCTGGT 541
Query 539 TCTGATGTCGCAGCTGAAACAGCAGCAGCTCTGGCTGCAGCGTCTATGGTTTTCAGGAAA 598
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 542 TCTGATGTCGCAGCTGAAACAGCAGCAGCTCTAGCTGCAGCTTCTATGGTTTTCAGAAAA 601
Query 599 GTTGATTCTAAGTATTCACGTTTGCTGCTCGCAACAGCTAAGAATGTGATGCAGTTTGCC 658
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 602 GTTGATTCCAAGTATTCACGTTTGCTGCTCGCAACAGCTAAGGATGTGATGCAGTTTGCC 661
Query 659 ATTCAGTA-CAGGGGAGCTTACAGTGATTCCCTTTCTTCATCCGTCTGTCCTTTCTACTG 717
|||||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 662 ATTCAGTACCA-GGGAGCTTACAGTGATTCCCTTTCCTCATCTGTCTGTCCTTTCTACTG 720
Query 718 CTCCTACTCTGGTTACAAGGACGAGCTGATGTGGGGTGCGTCCTGGCTGCTAAGAGCAAC 777
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 721 CTCCTACTCTGGTTACAAGGACGAGCTAATGTGGGGTGCGTCATGGCTGCTAAGAGCAAC 780
Query 778 GAATGACCCTTATTACGCAAACTTCATAAAATCGTTAGGAGGTGGAGATCAGCCTGACAT 837
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 GAATAACCCGTATTACGCAAACTTCATAAAATCTTTAGGAGGTGGAGATCAGCCTGACAT 840
Query 838 CTTCAGCTGGGACAATAAATATGCTGGTGCCTATGTTCTTCTGTCACGGAGAGCATTACT 897
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 CTTCAGCTGGGACAATAAATATGCTGGTGCCTATGTTCTTCTCTCACGGAGAGCATTACT 900
Query 898 TAACAAAGACAGCAACTTTGAACAATACAAGCAAGCAGCTGAGAATTTCATCTGCAAAAT 957
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 901 TAACAAAGACAGCAACTTTGAACAATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAAT 960
Query 958 CCTTCCAGATTCTCCTTCTTCCTCTACCCAATACACTCAAGGAGGATTAATGTACAAGTT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 CCTTCCAGATTCTCCTTCTTCCTCTACCCAATACACTCAAGGAGGATTAATGTACAAGCT 1020
Query 1018 ACCTCAAAGCAATCTTCAATACGTAACCTCCATAACATTCTTGCTCACAACTTATGCCAA 1077
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1021 ACCTCAAAGCAATCTTCAGTACGTAACCTCCATAACATTCTTGCTCACAACTTACGCCAA 1080
Query 1078 ATACATGAAATCCACAAAACACACATTCAACTGCGGAAACTCCGTCATCGTCCCCAACGC 1137
|||||||||| ||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 1081 ATACATGAAAGCCACAAAACACACATTCAATTGCGGAAGCTCCGTTATCGTCCCCAACGC 1140
Query 1138 CTTGATAAGCCTATCGAAGCGACAAGTCGATTACATACTCGGAGAGAACCCAATCAAAAT 1197
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1141 CTTGATAAGCCTATCGAAGCGACAAGTTGATTACATACTCGGAGATAACCCAATCAAAAT 1200
Query 1198 GTCGTACATGGTTGGTTTCGGATCCAATTTCCCTAAGAGAATCCACCACAGAGCATCTTC 1257
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTCATACATGGTTGGATTCTCTTCCAATTTCCCTAAGAGAATCCACCACAGAGCATCTTC 1260
Query 1258 GCTTCCTTCACACGCACTTCATTCCCATTCCTTAGGCTGCAATGGCGGATTCCAATCATT 1317
||||||||||||||||||| ||| || || |||||||||||||| ||||||||||| ||
Sbjct 1261 TCTTCCTTCACACGCACTTCGTTCTCAATCGTTAGGCTGCAATGGTGGATTCCAATCGTT 1320
Query 1318 CTACACTCAAAACCCTAACCCTAACATTCTCACAGGAGCAATCGTAGGAGGTCCAAATCA 1377
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1321 CTACACTCAAAACCCTAACCCTAACATTCTCACCGGAGCAATCGTAGGAGGTCCGAATCA 1380
Query 1378 AAACGATGGGTATCCAGATCAGAGAGACGATTACAGCCACGCAGAACCGGCGACTTACAT 1437
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct 1381 AAACGATGGGTATCCAGATCAGAGAGACGATTATAGTCACGCGGAACCGGCGACTTATAT 1440
Query 1438 CAACGCCGCATTCGTCGGACCTTTGGCGTACTTCGCCGCCGGTCGTTCGGCTTGAAATTG 1497
|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1441 AAACGCCGCCTTCGTCGGACCTTTGGCGTACTTCGCCGCCGGCCGTTCGACTTGAAATTG 1500
Query 1498 A-TTCCGCCACCGCCACCGCCAATCTCCGATGTGTAGTTCCATTGTTAGTTAAAGATCCG 1556
| ||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 1501 AATTC-GCCACCGCCAC----ATTCTCCGATTTGTAGTTCCATTGTTAGTTAAAGATCCG 1555
Query 1557 TTGG-CTTAAGCCTAACGTGAAAATCAGAAAAGGAAAAAGTTATTTTAATGTAAAACTCT 1615
|||| | |||||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 1556 TTGGTCC-AAGCCTAACGTGAAAATCAGAAG-GGACAAAGTTATTTAAATGTAAAACTCT 1613
Query 1616 TAATGGGCTAAGACCCAATATTAATGGACCC-AGCAGAAATATTTCTCGTGGTCTTATTT 1674
|||||||||||||||||||| ||| |||||| | | ||||||||||||||||||||||||
Sbjct 1614 TAATGGGCTAAGACCCAATACTAAAGGACCCGA-CGGAAATATTTCTCGTGGTCTTATTT 1672
Query 1675 AATTCT 1680
|| |||
Sbjct 1673 AACTCT 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5