BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476276
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71450.1 | Symbols: | Integrase-type DNA-binding superfamil... 1413 0.0
> AT1G71450.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:26927038-26928056 FORWARD LENGTH=1019
Length=1019
Score = 1413 bits (765), Expect = 0.0
Identities = 941/1023 (92%), Gaps = 24/1023 (2%)
Strand=Plus/Plus
Query 1 ACAACAAACACTCTTGAGCAAAACCTTACTTTTGTGTGTC-TCTGTGTGTTTGTTAATGG 59
||||||||||||||||||||||| || |||||||| | | ||||||| |||| ||||
Sbjct 1 ACAACAAACACTCTTGAGCAAAA----AC-TTTGTGTG-CGTGTGTGTGTGTGTTCATGG 54
Query 60 CAGGTCTTAGGAATTCCAGTAACAGCGACAAAGCGCAAAACGATGGGAAAGGTGTACCAT 119
| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 55 CTGGTCTTAGGAATTCCGGTAACAGCGACAAAGCGCAAAACGATGGCAAAGGTGTACCAT 114
Query 120 CTGCCTACAGAGGAGTCCGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATCCGTGAAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CTGCCTACAGAGGAGTCCGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATCCGTGAAC 174
Query 180 CGGGGACAAAGAACCGTATCTGGCTAGGCAGTTTCGAGACTCCTGAAATGGCTGCAACCG 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CGGGGACCAAGAACCGTATCTGGCTAGGCAGTTTCGAGACTCCTGAAATGGCTGCAACCG 234
Query 240 CCTATGACGTGGCAGCATTCCATTTCAGGGGGCGAGAAGCTCGTCTCAACTTCCCCGAGC 299
| || |||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||
Sbjct 235 CATACGACGTGGCAGCATTTCATTTCAGAGGGAGAGAAGCTCGTCTCAACTTCCCTGAGC 294
Query 300 TCGCCAGCAGCCTTCCACGTCCTGCAGACTCTAGCTCAGACAGCATTCGCATGGCAGCTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 295 TCGCCAGCAGCCTTCCACGTCCTGCAGACTCTAGCTCAGACAGCATTCGCATGGCAGTTC 354
Query 360 AGGAGGCAACACTCTGCCGCACAACCGAAGGATCAGAGTCAGCCATGCAAGTGAACAGCT 419
| |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 355 ATGAGGCAACACTCTGCCGCACCACCGAAGGAACAGAGTCAGCCATGCAAGTGGACAGCT 414
Query 420 CAAGCTCCTCCACTGTAGTTCCAACAATGGTCAGACTCTCGCCCACGGAAATTCAAGCGA 479
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 CAAGCTCCTCCAATGTAGCTCCAACAATGGTCAGACTCTCGCCCAGGGAAATTCAAGCGA 474
Query 480 TCAACGAGTCAACTTTGGGATCTCCAACTACATTGATGCATTCAACATACGACTCTATGG 539
||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct 475 TCAACGAGTCAACTTTGGGATCTCCTACTACAATGATGCATTCAACATACGACCCTATGG 534
Query 540 TGTTTGCTAATGATATGGAGATGAATGCTTGGGAAACATACCAGAGTGACTTTCTTTGGG 599
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AGTTTGCTAATGATGTGGAGATGAATGCTTGGGAAACATACCAGAGTGACTTTCTTTGGG 594
Query 600 ACCCTTAGCCCCAAAACCGAACTCATGGAGAGTTTCTACAGCTCAATCTTAGAATACCAG 659
||||||| |||||||||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 595 ACCCTTAACCCCAAAACCTAACTCATGGAGAGCTTCTACAGCTCAATCTTACAATACCAG 654
Query 660 CATAAGTTACTGGCCTAGAATGCTTAATTTTATTGAAGTTTAGTTTTCAGAGTCTAGCAC 719
|||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 655 CATAAGTTACTGGCTTAGAATACTTAAATTTATTGAAGTTTAGTTTTCAGAGTCTACCAC 714
Query 720 AAGGGTTGTTGATTCTGACGTTATAGCAAAGAATAAAGTTCATCGGAGTTTTGGAGGGAA 779
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 715 AAGGGTTGTTGATTCTGACGTTATAGCAAAGAATAAAGCTCATCAGA-TTTTGGAGGGAA 773
Query 780 GGACACTATGAGCTTGATGGGTCCCTGAAAAGGACCTCTTCACAAATATTTT-AA-tttt 837
||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 774 AGACTCTATGAGCTTGATGGGTCCCTGAAA-GGACCTCTTCACAAATATTTTTAAATTTT 832
Query 838 ttt-ttAATAAGCT-GTGTTAGAGATTGTGTGAGGTGTGACTTATAATTATTATTTT-CA 894
||| ||| || | | | | ||||| || ||||||||||||| |||||| |||| ||
Sbjct 833 TTTGTTACTA-G-TAGAAACATAGATTATG--AGGTGTGACTTATTATTATT-TTTTACA 887
Query 895 ATTGTTTGTTACCCCCATGCTTATGTATTTGGTTTGATATTATATTGTATGGATTCCTCA 954
||||||||||||| | || | ||||||||| |||||||| |||||| |||| ||||| |
Sbjct 888 ATTGTTTGTTACCTC-AT--TGATGTATTTGATTTGATATAATATTGAATGGTTTCCTGA 944
Query 955 AATCTATAAGATATTTTTATTCTAAACAAGACTTCTGTTCTCTCTTGACTCTCTTCCCTT 1014
|| |||||||||||||| ||||| | | |||||| ||||||||||||||| |||||||||
Sbjct 945 AAGCTATAAGATATTTT-ATTCTTA-CTAGACTTGTGTTCTCTCTTGACTTTCTTCCCTT 1002
Query 1015 AAC 1017
|||
Sbjct 1003 AAC 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5