BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476277
Length=2309
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71460.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 3489 0.0
> AT1G71460.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:26927984-26930316 REVERSE LENGTH=2333
Length=2333
Score = 3489 bits (1889), Expect = 0.0
Identities = 2180/2320 (94%), Gaps = 22/2320 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGTAGTTTCGTCTCTCGGATTCCGAGACCT-CC--CGTCCCTTTCCGTGACGACG 57
||||||||||| |||||||||||| |||||||||| || ||||||| ||||||||||||
Sbjct 1 ATGGAAGTAGTGTCGTCTCTCGGAATCCGAGACCTCCCGGCGTCCCTCTCCGTGACGACG 60
Query 58 AGCCTCAACCACCGTCCTTACCGTTCCTATAAAGACGGAGCTCCGGCGAAATCTCCGTTT 117
|| ||||||||||||||| | |||||| ||||||| || |||||||||||||||||| ||
Sbjct 61 AGTCTCAACCACCGTCCTCATCGTTCCGATAAAGATGGCGCTCCGGCGAAATCTCCGATT 120
Query 118 AGACCCAGCAGAACTAGACGACCTTCCACTTCTCCCGCCAAAAAGCCCAAACCTTTTCGG 177
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 121 AGACCAAGCAGAACTAGACGACCTTCCACTTCTCCCGCCAAAAAGCCGAAACCTTTTAGG 180
Query 178 GAAAGAGATGCTTTCCCTTCTTCTCTTCCTCTCCATTCCAAAAATCCAC-ACAGCATCCA 236
||||||||||||||||||||||||||||||||||| ||||| || || | ||| |||||
Sbjct 181 GAAAGAGATGCTTTCCCTTCTTCTCTTCCTCTCCACTCCAAGAA-CCCCTACATTATCCA 239
Query 237 CAGAGACATTCAAAGGTTTGCGAGGAAGAACAATCTCGAAGACGCTCTCACGATTCTTGA 296
|||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 240 CAGAGATATTCAAATTTTTGCGAGGCAGAACAATCTCGAAGTCGCTCTCACGATTCTTGA 299
Query 297 TTATCTCGAACAGAGAGGAATTCCTGTAAATGCGACAACTTTCTCCGCTCTTTTAGCCGC 356
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct 300 TTATCTCGAACAGAGAGGGATTCCTGTAAATGCGACAACTTTCTCTGCTCTTTTAGAGGC 359
Query 357 GTGTGTTCGCCGGAAGTCGTTACTTCACGGTAAGCAAGTCCATGTTCATATCCGTATTAA 416
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 360 GTGTGTTCGCCGGAAGTCGTTGCTTCACGGTAAACAAGTCCATGTTCATATACGTATTAA 419
Query 417 TGGGTTGGAGAGTAATGAGTTTATTAGGACCAAGCTTGTTCATATGTACACTGCTTGTGG 476
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 420 TGGGTTGGAGAGTAATGAGTTTCTAAGGACCAAGCTTGTTCATATGTATACTGCTTGTGG 479
Query 477 TTCGGTTAGAGATGCACAGAAGGTGTTCGACGAAAGTACTAGCTCAAATGTTTATTCTTG 536
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 480 TTCGGTTAAAGATGCACAGAAGGTGTTCGATGAAAGTACTAGCTCAAATGTTTACTCTTG 539
Query 537 GAATGCGTTGCTTAGAGGGACTGTGATATCAGGGAAGAAGCGGTATCAAGATGTTCTTTC 596
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 GAATGCGTTGCTTAGAGGGACTGTTATATCAGGGAAGAAGCGGTATCAAGATGTTCTTTC 599
Query 597 TACGTTTACAGAAATGAGAGAGCTTGGTGTTGATTTGAATGTTTATAGTTTCTCTAATGT 656
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TACGTTTACAGAAATGAGAGAGCTTGGTGTTGATTTGAATGTTTATAGTTTATCTAATGT 659
Query 657 GTTTAAGAGTTTTGCTGGTGCATCTGCTTTGAGACAGGGGTTGAAGACGCATGCCCTTGC 716
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 660 GTTTAAGAGTTTTGCTGGTGCATCTGCTTTGAGACAGGGATTGAAGACGCATGCACTTGC 719
Query 717 GATTAAGAATGGTTTGTTTAACAGTGTCTTTCTTAAGACTTCTCTTGTTGATATGTATTT 776
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATTAAGAATGGTTTGTTTAATAGTGTCTTTCTTAAGACTTCTCTTGTTGATATGTATTT 779
Query 777 CAAGTGTGGTAAAGTAGGGCTTGCACGTCGAGTTTTTGATGAGATTTTAGAGAGAGATAT 836
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 TAAGTGTGGTAAAGTAGGGCTTGCACGTCGAGTTTTTGATGAGATTGTAGAGAGAGATAT 839
Query 837 AGTCGTTTGGGGAGCTATGATTGCTGGATTGGCTCACAATAAACGGCAGTGGGAAGCATT 896
||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 840 AGTTGTTTGGGGGGCGATGATTGCTGGATTGGCTCACAATAAAAGGCAGTGGGAAGCGTT 899
Query 897 GGGGTTGTTTAGGTCGATGATTAGTGAAGAAG-GAATATATCCAAACTCAGTTATACTTA 955
||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 900 GGGACTGTTTAGGACGATGATTAGTGAAGAAAAGA-TATATCCAAACTCAGTTATACTTA 958
Query 956 CAACGATTCTTCCCGTGCTTGGGGATGTTAAGGCACTGAAACTGGGGAAGGGGGTCCATG 1015
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 959 CAACGATTCTTCCCGTACTTGGGGATGTTAAGGCACTGAAACTGGGGAAGGAGGTCCATG 1018
Query 1016 CCCATGTATTGAAAAT-GAAGAATTATTTGGAACAGCCGTTTGTTCACTCTGGTTTGATT 1074
|||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 CCCATGTATTGAAA-TCGAAGAATTACGTGGAACAGCCGTTTGTTCACTCTGGTTTGATT 1077
Query 1075 GATTTATACTGCAAGTGTGGGGATATGGTTTCTGGGAGACGGGTGTTCTATGGCTCCAAA 1134
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 1078 GATTTATACTGCAAGTGTGGGGATATGGCTTCTGGGAGACGTGTGTTCTATGGATCCAAA 1137
Query 1135 CAGAGGAATGCCATTTCTTGGACTGCACTGATGTCTGGGTACGCAGCCAACGGAAGATTT 1194
|||||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 1138 CAGAGGAATGCCATATCTTGGACTGCATTGATGTCTGGATACGCAGCCAACGGTAGATTT 1197
Query 1195 GATCAAGCTTTGAGGTCGATTGTTTGGATGCAGCAGGAAGGCTTTAAGCCAGACGTCGTT 1254
||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||
Sbjct 1198 GATCAAGCTTTGAGGTCGATTGTTTGGATGCAGCAGGAAGGTTTTAGGCCAGATGTTGTT 1257
Query 1255 ACAATTGCTACTGTTCTTCCTGTTTGTGCAGAGCTGAGGGCTATAAAGCAAGGAAAGGAG 1314
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1258 ACAATTGCTACTGTTCTTCCTGTTTGCGCAGAGCTGAGGGCTATAAAGCAAGGAAAGGAG 1317
Query 1315 ATTCACTGTTATGCTTTAAAGAATCTCTTCTTGCCAAATGTATCTTTAGTCACTTCCTTG 1374
||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 1318 ATTCATTGTTATGCTTTAAAGAATCTCTTCTTGCCGAATGTATCCCTGGTCACTTCCTTG 1377
Query 1375 ATGGTGATGTACTCAAAGTGCGGTGTTCCAGAGTATCCTGTGAGACTGTTTGACAGGTTG 1434
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1378 ATGGTGATGTACTCAAAGTGCGGTGTTCCAGAGTATCCTATCAGACTGTTTGACAGGTTG 1437
Query 1435 GAGCAAAGAAATGTGAAAGCATGGACCGCCATGATCGACTGCTATGTGGAAAATGGTGAT 1494
|| ||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 1438 GAACAAAGGAATGTGAAAGCATGGACCGCTATGATTGACTGCTATGTGGAAAATTGTGAT 1497
Query 1495 TTAAGAGCAGGGATTGAGGTATTCAGATCAATGCTGTTATCAAAGCACAGGCCAGATTCT 1554
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1498 TTAAGAGCAGGGATTGAGGTATTCAGATTGATGCTGTTATCAAAACACAGGCCAGATTCT 1557
Query 1555 GTTACAATGGGTAGGGTTTTGACTGTTTGCAGTGACCTCAAAGCATTAAAGCTGGGGAAG 1614
||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1558 GTTACGATGGGTAGGGTTTTGACTGTTTGCAGTGATCTCAAAGCATTAAAGTTGGGGAAA 1617
Query 1615 GAGCTTCATGGGCACATTCTGAAAAAGGAATTTGAGTCTATCCCATTTGTTTCTGCAAAA 1674
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1618 GAGCTTCATGGGCACATTCTGAAAAAGGAATTTGAGTCGATCCCATTTGTTTCTGCAAGA 1677
Query 1675 ATCATCAAGATGTATGGACAATGTGGAGATCTCAGAAGTGCTAATTTCTCTTTTGATGCT 1734
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1678 ATCATCAAGATGTATGGAAAATGTGGAGATCTCAGAAGTGCTAATTTCTCTTTCGATGCT 1737
Query 1735 GTTGTTGTCAAGGGCTCTCTGACATGGACCGCCATTATAGAGGCTTATGGCTACAATGGA 1794
|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1738 GTTGCTGTCAAGGGCTCTCTGACATGGACCGCCATTATAGAGGCTTATGGATGCAATGAA 1797
Query 1795 CGCTTCAGGGATGCAATAAAGTGTTTTGAGCAAATGGTATCAAGAGGGTTTACTCCCAAC 1854
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CTCTTCAGGGATGCAATAAACTGTTTTGAGCAAATGGTATCAAGAGGGTTTACTCCCAAC 1857
Query 1855 ACATTCACATTTACAGCAGTTTTATCTATTTGCAGCCAAGCCGGATTTGCTGATGAAGCT 1914
|| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1858 ACCTTCACATTTACAGCAGTTTTATCTATTTGCAGTCAAGCCGGATTTGTTGATGAAGCT 1917
Query 1915 TATCGCTTCTTCAACTTGATGCTCCGGATGTACAATTTGCATCCATCAGAAGAGCATTAT 1974
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1918 TATCGCTTCTTCAACTTGATGCTCCGGATGTACAATTTGCAGCCATCAGAAGAGCATTAT 1977
Query 1975 TCACTGGTCATTGAACTTCTCAATCGGTTTGGTCGTGTTGAAGAGGCGCAAAGACTTGAG 2034
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 1978 TCACTGGTCATTGAACTTCTCAATCGGTGTGGTCGTGTTGAAGAGGCACAAAGACTTGCG 2037
Query 2035 GTCATGAGTTCCTCGTCATCCCTACAAACCTGACTGTAGATTCAGACAACTT-T--GAAT 2091
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||| | | |
Sbjct 2038 GTCATGAGTTCCTCGTCATCCCTACAGACCTGACTGCAGATTCAGACATCTTCTTTGCTT 2097
Query 2092 TTTCTCAAAGCCACCAAGTAAGT-GTCTCGAAGATTTCTGAGAAGTATATTCTGTTCTCT 2150
||||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||
Sbjct 2098 TTTCTCAAAGCCACCAAGTAAGTTG-CTCGAAGAGTTATGAGAAGTATATTCTGTTCTCT 2156
Query 2151 TGTTTCCAAGAACTTGCATTAATAGTACTGTATATACTGAATTTGGTTCCAGAAATTAAT 2210
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2157 TGTTTCCAAGAACTTGCATTAATAGTGCTGTATATACTGAATTTGGTTCCAGAA-T---- 2211
Query 2211 TAGATTGAACTT-GTTCAACTTGTAAAAATCTTGCAGTATCAAATGTAGATTTTTCTTAC 2269
||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2212 --GATTGAATTTTGTTCAACTTGTAAAAATCTTGCAGTATCAAATGTAGAGTTTTCTTAA 2269
Query 2270 GGTTAGTTAAGGGAAGAGAGTCAAGAGAGAACAGAAGTCT 2309
| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 2270 GATTAGTTAAGGGAAGAAAGTCAAGAGAGAACACAAGTCT 2309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114607844235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5